Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Reverse (-)

6552436 .. 6555447

Gene Structure 3012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016422

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGAGCGCCGACAAGGATAACAACATCAACATGGCCGATCTCGCCACCGCTTTGAAGGAAGAGAACCAGGAAGGAATCCTCAACGCGCTTAAGGGTTTTTGGTGTCTGCAGGGTTTAGCTGGTGGTCAGCATGTGGAGGAAGTCCTCAGCAGTTTATCTCCTAATGTCCGGAAGCGTGTTGATTTTCTTAGGGAAGTCCAGTTCCATTTTTGTTCAGAATATTGTACTCATTTTTTTAATGAAAGTTTCAGGCTTGTAATGAATTTCTCTGGTCTGATTGTGACTGGTGCTGTTGAAGCTGAAGGAGTTACTATTGAAGCATCCACAAATGAAGAGGATGCTGAAGGTACAGTCTTAAAATCGATCCAGATAACAGAGCGTGATGAAGGAGCTTTAAAATATCTGAAGGACATCAAGTGGGCTAGGATAGATAACCCTAAGGGATTCAAACTTGAGTTCTACTTTGACACCAATCCATATTTCAAGAACACCGTCTTGACGAAGACATATCACATGATCGATGAAGATGAACCTATTCTTGAGAAGGCAATTGGAACTGAAATCGAGTGGTATCCGGGAAAGTGCTTAACACAGAAGCTCCTTAAGAAGAAGCCTAAGAAGGGATCAAAAAACAATAAGCCAATCACAAAAACTGAAGATTGTGAGAGCTTCTTCAACTTTTTCAGTCCACCCCAAGTCCCTGAAGAGGATGAAGATCTTGATGAAGATGCTGCTGAGGAACTCCAGAATCAGATGGAACAAGATTATGATGTTGGGTCAACCATTCGGGACAAGATCATCCCACATGCAGTCTCCTGGTTTACTGGAGAGGTATCAGGTCAGAAGGGTGTGAGAGCACAACTTGGTGATGGTCAACAGGGTGAGAGGCCTCCGGAGTGCAAACAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

304

Amino Acids

34.37

Weight (kDa)

4.77

Isoelectric Point (pI)

38.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	122 - 277	1.1e-59	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	86
AccIII	TCCGGA	2 cut(s)	168, 892
AciI	CCGC	1 cut(s)	48
AclWI	GGATC	2 cut(s)	358, 631
AcoI	YGGCCR	1 cut(s)	33
AcsI	RAATTY	1 cut(s)	262
AcuI	CTGAAG	5 cut(s)	321, 363, 425, 675, 723
AfaI	GTAC	2 cut(s)	226, 349
AfiI	CCNNNNNNNGG	2 cut(s)	620, 706
AflII	CTTAAG	2 cut(s)	89, 602
AgsI	TTSAA	6 cut(s)	55, 296, 317, 448, 484, 676
AjnI	CCWGG	2 cut(s)	66, 815
AjuI	GAANNNNNNNTTGG	2 cut(s)	464, 496
AloI	GAACNNNNNNTCC	2 cut(s)	185, 217
AluBI	AGCT	5 cut(s)	119, 299, 392, 598, 669
AluI	AGCT	5 cut(s)	119, 299, 392, 598, 669
Alw21I	GWGCWC	1 cut(s)	859
Alw26I	GTCTC	1 cut(s)	817
AlwI	GGATC	2 cut(s)	358, 631
Aor13HI	TCCGGA	2 cut(s)	168, 892
AoxI	GGCC	2 cut(s)	33, 887
ApeKI	GCWGC	1 cut(s)	731
ApoI	RAATTY	1 cut(s)	262
Asp700I	GAANNNNTTC	1 cut(s)	534
AspLEI	GCGC	2 cut(s)	8, 88
AsuC2I	CCSGG	1 cut(s)	576
AsuHPI	GGTGA	2 cut(s)	878, 893
AxyI	CCTNAGG	1 cut(s)	438
BbsI	GAAGAC	1 cut(s)	509
Bbv12I	GWGCWC	1 cut(s)	859
BbvCI	CCTCAGC	2 cut(s)	146, 735
BbvI	GCAGC	1 cut(s)	718
BccI	CCATC	2 cut(s)	748, 863
BciT130I	CCWGG	2 cut(s)	68, 817
BciVI	GTATCC	1 cut(s)	582
BcnI	CCSGG	1 cut(s)	576
BcoDI	GTCTC	1 cut(s)	817
BfaI	CTAG	1 cut(s)	423
BfmI	CTRYAG	1 cut(s)	107
BfoI	RGCGCY	1 cut(s)	9
BfrI	CTTAAG	2 cut(s)	89, 602
BfuI	GTATCC	1 cut(s)	582
BglII	AGATCT	1 cut(s)	715
BisI	GCNGC	1 cut(s)	732
BlsI	GCNGC	1 cut(s)	733
Bme1390I	CCNGG	3 cut(s)	68, 576, 817
BmrFI	CCNGG	3 cut(s)	68, 576, 817
BmsI	GCATC	3 cut(s)	328, 329, 718
BpiI	GAAGAC	1 cut(s)	509
BpmI	CTGGAG	2 cut(s)	728, 846
Bpu10I	CCTNAGC	2 cut(s)	146, 735
BpuEI	CTTGAG	2 cut(s)	473, 560
BpuMI	CCSGG	1 cut(s)	576
Bsa29I	ATCGAT	2 cut(s)	362, 519
BsaBI	GATNNNNATC	1 cut(s)	714
BsaWI	WCCGGW	2 cut(s)	168, 892
BsaXI	ACNNNNNCTCC	2 cut(s)	582, 612
Bsc4I	CCNNNNNNNGG	2 cut(s)	620, 706
Bse1I	ACTGG	3 cut(s)	199, 289, 829
Bse21I	CCTNAGG	1 cut(s)	438
Bse8I	GATNNNNATC	1 cut(s)	714
BseAI	TCCGGA	2 cut(s)	168, 892
BseBI	CCWGG	2 cut(s)	68, 817
BseCI	ATCGAT	2 cut(s)	362, 519
BseGI	GGATG	4 cut(s)	320, 343, 715, 798
BseJI	GATNNNNATC	1 cut(s)	714
BseLI	CCNNNNNNNGG	2 cut(s)	620, 706
BseMII	CTCAG	2 cut(s)	160, 726
BseNI	ACTGG	3 cut(s)	199, 289, 829
BseXI	GCAGC	1 cut(s)	718
Bsh1236I	CGCG	1 cut(s)	86
BshFI	GGCC	2 cut(s)	35, 889
BshVI	ATCGAT	2 cut(s)	362, 519
BsiHKAI	GWGCWC	1 cut(s)	859
BsiSI	CCGG	3 cut(s)	169, 575, 893
BslFI	GGGAC	2 cut(s)	683, 803
BslI	CCNNNNNNNGG	2 cut(s)	620, 706
BsmAI	GTCTC	1 cut(s)	817
BsmFI	GGGAC	2 cut(s)	683, 803
BsnI	GGCC	2 cut(s)	35, 889
Bsp1286I	GDGCHC	1 cut(s)	859
Bsp13I	TCCGGA	2 cut(s)	168, 892
Bsp143I	GATC	6 cut(s)	37, 363, 516, 623, 715, 795
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	2 cut(s)	35, 889
BspCNI	CTCAG	2 cut(s)	159, 727
BspDI	ATCGAT	2 cut(s)	362, 519
BspEI	TCCGGA	2 cut(s)	168, 892
BspFNI	CGCG	1 cut(s)	86
BspMAI	CTGCAG	1 cut(s)	111
BspPI	GGATC	2 cut(s)	358, 631
BspTI	CTTAAG	2 cut(s)	89, 602
BsrI	ACTGG	3 cut(s)	199, 289, 829
BssMI	GATC	6 cut(s)	37, 363, 516, 623, 715, 795
Bst2UI	CCWGG	2 cut(s)	68, 817
Bst4CI	ACNGT	2 cut(s)	352, 493
Bst6I	CTCTTC	3 cut(s)	54, 327, 699
BstAFI	CTTAAG	2 cut(s)	89, 602
BstDEI	CTNAG	5 cut(s)	146, 188, 438, 615, 735
BstF5I	GGATG	4 cut(s)	320, 343, 715, 798
BstFNI	CGCG	1 cut(s)	86
BstH2I	RGCGCY	1 cut(s)	9
BstHHI	GCGC	2 cut(s)	8, 88
BstKTI	GATC	6 cut(s)	40, 366, 519, 626, 718, 798
BstMAI	GTCTC	1 cut(s)	817
BstMBI	GATC	6 cut(s)	37, 363, 516, 623, 715, 795
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 296
BstNI	CCWGG	2 cut(s)	68, 817
BstNSI	RCATGY	2 cut(s)	134, 809
BstSCI	CCNGG	3 cut(s)	66, 574, 815
BstSFI	CTRYAG	1 cut(s)	107
BstUI	CGCG	1 cut(s)	86
BstV1I	GCAGC	1 cut(s)	718
BstV2I	GAAGAC	1 cut(s)	509
BstX2I	RGATCY	1 cut(s)	715
BstYI	RGATCY	1 cut(s)	715
Bsu15I	ATCGAT	2 cut(s)	362, 519
Bsu36I	CCTNAGG	1 cut(s)	438
BsuI	GTATCC	1 cut(s)	582
BsuRI	GGCC	2 cut(s)	35, 889
BsuTUI	ATCGAT	2 cut(s)	362, 519
BtsCI	GGATG	4 cut(s)	320, 343, 715, 798
CfoI	GCGC	2 cut(s)	8, 88
ClaI	ATCGAT	2 cut(s)	362, 519
Csp6I	GTAC	2 cut(s)	225, 348
CviAII	CATG	4 cut(s)	31, 131, 514, 806
CviQI	GTAC	2 cut(s)	225, 348
DdeI	CTNAG	5 cut(s)	146, 188, 438, 615, 735
DpnI	GATC	6 cut(s)	39, 365, 518, 625, 717, 797
DpnII	GATC	6 cut(s)	37, 363, 516, 623, 715, 795
DraI	TTTAAA	1 cut(s)	396
EaeI	YGGCCR	1 cut(s)	33
Eam1104I	CTCTTC	3 cut(s)	54, 327, 699
EarI	CTCTTC	3 cut(s)	54, 327, 699
Eco147I	AGGCCT	1 cut(s)	889
Eco57I	CTGAAG	5 cut(s)	321, 363, 425, 675, 723
Eco81I	CCTNAGG	1 cut(s)	438
EcoRII	CCWGG	2 cut(s)	66, 815
FaeI	CATG	4 cut(s)	34, 134, 517, 809
FaiI	YATR	7 cut(s)	32, 132, 478, 508, 515, 768, 807
FaqI	GGGAC	2 cut(s)	683, 803
FatI	CATG	4 cut(s)	30, 130, 513, 805
Fnu4HI	GCNGC	1 cut(s)	732
FokI	GGATG	4 cut(s)	307, 350, 722, 785
Fsp4HI	GCNGC	1 cut(s)	732
FspBI	CTAG	1 cut(s)	423
GlaI	GCGC	2 cut(s)	7, 87
GluI	GCNGC	1 cut(s)	732
GsuI	CTGGAG	2 cut(s)	728, 846
HaeII	RGCGCY	1 cut(s)	9
HaeIII	GGCC	2 cut(s)	35, 889
HapII	CCGG	3 cut(s)	169, 575, 893
HhaI	GCGC	2 cut(s)	8, 88
Hin1II	CATG	4 cut(s)	34, 134, 517, 809
Hin6I	GCGC	2 cut(s)	6, 86
HinP1I	GCGC	2 cut(s)	6, 86
HincII	GTYRAC	2 cut(s)	780, 875
HindII	GTYRAC	2 cut(s)	780, 875
HinfI	GANTC	3 cut(s)	75, 444, 748
HpaII	CCGG	3 cut(s)	169, 575, 893
HphI	GGTGA	2 cut(s)	878, 893
Hpy166II	GTNNAC	4 cut(s)	689, 780, 822, 875
Hpy188I	TCNGA	5 cut(s)	217, 276, 405, 753, 843
Hpy188III	TCNNGA	9 cut(s)	169, 367, 484, 496, 539, 719, 745, 788, 893
Hpy8I	GTNNAC	4 cut(s)	689, 780, 822, 875
HpyAV	CCTTC	9 cut(s)	49, 65, 296, 338, 380, 400, 538, 613, 838
HpyCH4III	ACNGT	2 cut(s)	352, 493
HpyCH4V	TGCA	3 cut(s)	109, 809, 900
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 296
HpyF3I	CTNAG	5 cut(s)	146, 188, 438, 615, 735
Hsp92II	CATG	4 cut(s)	34, 134, 517, 809
HspAI	GCGC	2 cut(s)	6, 86
Kpn2I	TCCGGA	2 cut(s)	168, 892
Kzo9I	GATC	6 cut(s)	37, 363, 516, 623, 715, 795
LmnI	GCTCC	2 cut(s)	389, 603
Lsp1109I	GCAGC	1 cut(s)	718
LweI	GCATC	3 cut(s)	328, 329, 718
MaeI	CTAG	1 cut(s)	423
MaeIII	GTNAC	2 cut(s)	280, 307
MalI	GATC	6 cut(s)	39, 365, 518, 625, 717, 797
MboI	GATC	6 cut(s)	37, 363, 516, 623, 715, 795
MfeI	CAATTG	1 cut(s)	549
MflI	RGATCY	1 cut(s)	715
MhlI	GDGCHC	1 cut(s)	859
MluCI	AATT	2 cut(s)	262, 549
MnlI	CCTC	9 cut(s)	89, 130, 155, 328, 700, 730, 823, 879, 900
MroI	TCCGGA	2 cut(s)	168, 892
MroXI	GAANNNNTTC	1 cut(s)	534
MseI	TTAA	6 cut(s)	90, 237, 356, 395, 587, 603
MslI	CAYNNNNRTG	1 cut(s)	29
MspCI	CTTAAG	2 cut(s)	89, 602
MspI	CCGG	3 cut(s)	169, 575, 893
MspR9I	CCNGG	3 cut(s)	68, 576, 817
MunI	CAATTG	1 cut(s)	549
MvaI	CCWGG	2 cut(s)	68, 817
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	2 cut(s)	41, 296
NciI	CCSGG	1 cut(s)	576
NdeII	GATC	6 cut(s)	37, 363, 516, 623, 715, 795
NlaIII	CATG	4 cut(s)	34, 134, 517, 809
NmuCI	GTSAC	1 cut(s)	280
NspI	RCATGY	2 cut(s)	134, 809
PceI	AGGCCT	1 cut(s)	889
PdmI	GAANNNNTTC	1 cut(s)	534
PfeI	GAWTC	3 cut(s)	75, 444, 748
PfoI	TCCNGGA	1 cut(s)	574
PkrI	GCNGC	1 cut(s)	733
Psp6I	CCWGG	2 cut(s)	66, 815
PspGI	CCWGG	2 cut(s)	66, 815
PstI	CTGCAG	1 cut(s)	111
PsuI	RGATCY	1 cut(s)	715
RsaI	GTAC	2 cut(s)	226, 349
RsaNI	GTAC	2 cut(s)	225, 348
RseI	CAYNNNNRTG	1 cut(s)	29
SaqAI	TTAA	6 cut(s)	90, 237, 356, 395, 587, 603
SatI	GCNGC	1 cut(s)	732
Sau3AI	GATC	6 cut(s)	37, 363, 516, 623, 715, 795
ScrFI	CCNGG	3 cut(s)	68, 576, 817
SduI	GDGCHC	1 cut(s)	859
SetI	ASST	9 cut(s)	121, 301, 349, 394, 535, 600, 671, 834, 841
SfaNI	GCATC	3 cut(s)	328, 329, 718
SfcI	CTRYAG	1 cut(s)	107
SmiMI	CAYNNNNRTG	1 cut(s)	29
SmlI	CTYRAG	4 cut(s)	89, 452, 539, 602
SmoI	CTYRAG	4 cut(s)	89, 452, 539, 602
Sse9I	AATT	2 cut(s)	262, 549
SseBI	AGGCCT	1 cut(s)	889
SsiI	CCGC	1 cut(s)	48
SspI	AATATT	1 cut(s)	221
SspMI	CTAG	1 cut(s)	423
StuI	AGGCCT	1 cut(s)	889
StyD4I	CCNGG	3 cut(s)	66, 574, 815
TaaI	ACNGT	2 cut(s)	352, 493
TaqI	TCGA	3 cut(s)	362, 519, 564
TasI	AATT	2 cut(s)	262, 549
TatI	WGTACW	1 cut(s)	224
TfiI	GAWTC	3 cut(s)	75, 444, 748
Tru1I	TTAA	6 cut(s)	90, 237, 356, 395, 587, 603
Tru9I	TTAA	6 cut(s)	90, 237, 356, 395, 587, 603
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	1 cut(s)	731
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	8 cut(s)	255, 275, 345, 399, 537, 543, 726, 738
Vha464I	CTTAAG	2 cut(s)	89, 602
XapI	RAATTY	1 cut(s)	262
XceI	RCATGY	2 cut(s)	134, 809
XmnI	GAANNNNTTC	1 cut(s)	534
XspI	CTAG	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.