Rh2AG435500

Belongs to the nucleosome assembly protein (NAP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000381
Physical Location & Seq
Reverse (-)
64648114 .. 64650901
2788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG435500.1

Sequence Viewer

Length: 690 bp
ATGAGTTCCTATGGATGTGGCTTCAATGGCAATGACCGCAATCTCGATTCCGAACGAAGAGATCCTGGTCTTACTGCTCAGAAGCAGGCCCAGCATAAGAAGTTGGAGAAGAAATTTTTCAAGGACAGAGCTGCACTGGTAGACAAATACCATCAGCTCTACAAACCTCTGTACGAAAAGAGATATGATATTGTTAATGGTATAACTGAAGTCGGAGTAAAAACTCAAGAACCGACGGAGATTGATTGGTATCCCGGGCAATGCTTGACAATCAATCCAAGAAAGGACCCAAAGAGTGCCAAGTCTTTGACTCCAGCTGATATTTGTTCCAGCTTCTTTACGTTTTTCAAACTTCCCCAACATGATGATTATACTGGTGCAGATATGGCTTCTATGTTCAAGACTAGGATAGAAAACGACCGTGAAATGGGCTTAACAATTCGAGACAAGATCATCCCTCACGCAGTGTCATGGTTCGCTGTTAATATAGACGAGCTTGATGATAGTGAAGACGACGATGACAGTGACTATCATTTTGACTTTGATAGTGATGATGAAGATGACGCGTACAAGAAGTATGCTGCTGCTTATAACAACAACAAAGAAGAGGAAGATCGCAAAAGAAAGAGAGAGAGTGACTGGACTAATGCTGAGAGAGCAATGGGTAGGTTAACGCTGCGAGAGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAP

Protein Analysis

229

Amino Acids

26.73

Weight (kDa)

5.02

Isoelectric Point (pI)

38.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 27 - 71 1.6e-08 Nucleosome assembly protein (NAP)
NAP PF00956 74 - 160 2.3e-14 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000381)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 591
AccI GTMKAC 1 cut(s) 141
AccII CGCG 1 cut(s) 566
AciI CCGC 1 cut(s) 37
AclWI GGATC 1 cut(s) 56
AcsI RAATTY 1 cut(s) 113
AcuI CTGAAG 1 cut(s) 228
AdeI CACNNNGTG 1 cut(s) 466
AfaI GTAC 2 cut(s) 173, 569
AfiI CCNNNNNNNGG 1 cut(s) 427
AflIII ACRYGT 1 cut(s) 564
AgsI TTSAA 4 cut(s) 25, 121, 349, 400
AjnI CCWGG 1 cut(s) 64
AluBI AGCT 5 cut(s) 131, 157, 317, 333, 496
AluI AGCT 5 cut(s) 131, 157, 317, 333, 496
Alw26I GTCTC 1 cut(s) 438
AlwI GGATC 1 cut(s) 56
Ama87I CYCGRG 1 cut(s) 254
AoxI GGCC 1 cut(s) 87
ApeKI GCWGC 4 cut(s) 131, 581, 584, 676
ApoI RAATTY 1 cut(s) 113
ArsI GACNNNNNNTTYG 2 cut(s) 518, 550
Asp700I GAANNNNTTC 1 cut(s) 116
AspS9I GGNCC 2 cut(s) 88, 286
AsuC2I CCSGG 2 cut(s) 255, 256
AvaI CYCGRG 1 cut(s) 254
AvaII GGWCC 1 cut(s) 286
BbsI GAAGAC 1 cut(s) 516
BbvI GCAGC 4 cut(s) 118, 568, 571, 663
BccI CCATC 1 cut(s) 159
BciT130I CCWGG 1 cut(s) 66
BciVI GTATCC 1 cut(s) 261
BcnI CCSGG 2 cut(s) 255, 256
BcoDI GTCTC 1 cut(s) 438
BfaI CTAG 1 cut(s) 405
BfuI GTATCC 1 cut(s) 261
BisI GCNGC 4 cut(s) 132, 582, 585, 677
BlsI GCNGC 4 cut(s) 133, 583, 586, 678
Bme1390I CCNGG 3 cut(s) 66, 255, 256
Bme18I GGWCC 1 cut(s) 286
BmeT110I CYCGRG 1 cut(s) 254
BmgT120I GGNCC 2 cut(s) 88, 286
BmiI GGNNCC 1 cut(s) 288
BmrFI CCNGG 3 cut(s) 66, 255, 256
BpiI GAAGAC 1 cut(s) 516
BpmI CTGGAG 1 cut(s) 297
BpuEI CTTGAG 1 cut(s) 210
BpuMI CCSGG 2 cut(s) 255, 256
BsaBI GATNNNNATC 1 cut(s) 249
BsaJI CCNNGG 1 cut(s) 254
Bsc4I CCNNNNNNNGG 1 cut(s) 427
Bse1I ACTGG 3 cut(s) 141, 379, 644
Bse3DI GCAATG 3 cut(s) 37, 266, 666
Bse8I GATNNNNATC 1 cut(s) 249
BseBI CCWGG 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 254
BseGI GGATG 2 cut(s) 20, 453
BseJI GATNNNNATC 1 cut(s) 249
BseLI CCNNNNNNNGG 1 cut(s) 427
BseMI GCAATG 3 cut(s) 37, 266, 666
BseMII CTCAG 2 cut(s) 92, 642
BseNI ACTGG 3 cut(s) 141, 379, 644
BseXI GCAGC 4 cut(s) 118, 568, 571, 663
BseYI CCCAGC 1 cut(s) 90
BsgI GTGCAG 2 cut(s) 117, 399
Bsh1236I CGCG 1 cut(s) 566
Bsh1285I CGRYCG 1 cut(s) 421
BshFI GGCC 1 cut(s) 89
BsiEI CGRYCG 1 cut(s) 421
BsiHKCI CYCGRG 1 cut(s) 254
BsiSI CCGG 1 cut(s) 255
BslI CCNNNNNNNGG 1 cut(s) 427
BsmAI GTCTC 1 cut(s) 438
BsnI GGCC 1 cut(s) 89
BsoBI CYCGRG 1 cut(s) 254
Bsp143I GATC 3 cut(s) 61, 450, 613
BspACI CCGC 1 cut(s) 37
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 2 cut(s) 91, 643
BspFNI CGCG 1 cut(s) 566
BspLI GGNNCC 1 cut(s) 288
BspPI GGATC 1 cut(s) 56
BsrDI GCAATG 3 cut(s) 37, 266, 666
BsrI ACTGG 3 cut(s) 141, 379, 644
BssECI CCNNGG 1 cut(s) 254
BssMI GATC 3 cut(s) 61, 450, 613
Bst2UI CCWGG 1 cut(s) 66
Bst4CI ACNGT 2 cut(s) 422, 524
Bst6I CTCTTC 2 cut(s) 52, 600
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 2 cut(s) 78, 651
BstF5I GGATG 2 cut(s) 20, 453
BstFNI CGCG 1 cut(s) 566
BstKTI GATC 3 cut(s) 64, 453, 616
BstMAI GTCTC 1 cut(s) 438
BstMBI GATC 3 cut(s) 61, 450, 613
BstMCI CGRYCG 1 cut(s) 421
BstMWI GCNNNNNNNGC 6 cut(s) 27, 36, 91, 386, 656, 682
BstNI CCWGG 1 cut(s) 66
BstSCI CCNGG 3 cut(s) 64, 253, 254
BstUI CGCG 1 cut(s) 566
BstV1I GCAGC 4 cut(s) 118, 568, 571, 663
BstV2I GAAGAC 1 cut(s) 516
BstX2I RGATCY 1 cut(s) 61
BstYI RGATCY 1 cut(s) 61
BsuI GTATCC 1 cut(s) 261
BsuRI GGCC 1 cut(s) 89
BtsCI GGATG 2 cut(s) 20, 453
BtsI GCAGTG 1 cut(s) 471
BtsIMutI CAGTG 3 cut(s) 134, 471, 529
Cac8I GCNNGC 1 cut(s) 87
Cfr13I GGNCC 2 cut(s) 88, 286
Cfr9I CCCGGG 1 cut(s) 254
CseI GACGC 1 cut(s) 572
Csp6I GTAC 2 cut(s) 172, 568
CviAII CATG 2 cut(s) 362, 471
CviJI RGCY 9 cut(s) 21, 89, 131, 157, 317, 333, 389, 432, 496
CviKI_1 RGCY 9 cut(s) 21, 89, 131, 157, 317, 333, 389, 432, 496
CviQI GTAC 2 cut(s) 172, 568
DdeI CTNAG 2 cut(s) 78, 651
DpnI GATC 3 cut(s) 63, 452, 615
DpnII GATC 3 cut(s) 61, 450, 613
DraIII CACNNNGTG 1 cut(s) 466
Eam1104I CTCTTC 2 cut(s) 52, 600
EarI CTCTTC 2 cut(s) 52, 600
Eco47I GGWCC 1 cut(s) 286
Eco57I CTGAAG 1 cut(s) 228
Eco88I CYCGRG 1 cut(s) 254
EcoO109I RGGNCCY 1 cut(s) 286
EcoRII CCWGG 1 cut(s) 64
FaeI CATG 2 cut(s) 365, 474
FatI CATG 2 cut(s) 361, 470
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 4 cut(s) 132, 582, 585, 677
FokI GGATG 2 cut(s) 27, 440
Fsp4HI GCNGC 4 cut(s) 132, 582, 585, 677
FspBI CTAG 1 cut(s) 405
GluI GCNGC 4 cut(s) 132, 582, 585, 677
GsaI CCCAGC 1 cut(s) 94
GsuI CTGGAG 1 cut(s) 297
HaeIII GGCC 1 cut(s) 89
HapII CCGG 1 cut(s) 255
HgaI GACGC 1 cut(s) 572
Hin1II CATG 2 cut(s) 365, 474
HincII GTYRAC 1 cut(s) 672
HindII GTYRAC 1 cut(s) 672
HinfI GANTC 2 cut(s) 47, 310
HpaI GTTAAC 1 cut(s) 672
HpaII CCGG 1 cut(s) 255
Hpy166II GTNNAC 2 cut(s) 142, 672
Hpy188I TCNGA 3 cut(s) 52, 81, 215
Hpy188III TCNNGA 4 cut(s) 44, 227, 400, 443
Hpy8I GTNNAC 2 cut(s) 142, 672
Hpy99I CGWCG 2 cut(s) 238, 518
HpyCH4III ACNGT 2 cut(s) 422, 524
HpyCH4IV ACGT 1 cut(s) 341
HpyCH4V TGCA 2 cut(s) 134, 380
HpyF10VI GCNNNNNNNGC 6 cut(s) 27, 36, 91, 386, 656, 682
HpyF3I CTNAG 2 cut(s) 78, 651
HpySE526I ACGT 1 cut(s) 341
Hsp92II CATG 2 cut(s) 365, 474
KspAI GTTAAC 1 cut(s) 672
Kzo9I GATC 3 cut(s) 61, 450, 613
Lsp1109I GCAGC 4 cut(s) 118, 568, 571, 663
MaeI CTAG 1 cut(s) 405
MaeII ACGT 1 cut(s) 341
MaeIII GTNAC 2 cut(s) 524, 635
MalI GATC 3 cut(s) 63, 452, 615
MboI GATC 3 cut(s) 61, 450, 613
MboII GAAGA 6 cut(s) 69, 121, 521, 569, 617, 623
MflI RGATCY 1 cut(s) 61
MluCI AATT 2 cut(s) 113, 438
MluI ACGCGT 1 cut(s) 564
MlyI GAGTC 1 cut(s) 304
MmeI TCCRAC 2 cut(s) 84, 193
MnlI CCTC 3 cut(s) 177, 468, 601
MroXI GAANNNNTTC 1 cut(s) 116
MseI TTAA 4 cut(s) 195, 434, 483, 671
MspA1I CMGCKG 1 cut(s) 317
MspI CCGG 1 cut(s) 255
MspR9I CCNGG 3 cut(s) 66, 255, 256
MvaI CCWGG 1 cut(s) 66
MvnI CGCG 1 cut(s) 566
MwoI GCNNNNNNNGC 6 cut(s) 27, 36, 91, 386, 656, 682
NciI CCSGG 2 cut(s) 255, 256
NdeII GATC 3 cut(s) 61, 450, 613
NlaIII CATG 2 cut(s) 365, 474
NlaIV GGNNCC 1 cut(s) 288
NmuCI GTSAC 2 cut(s) 524, 635
PdmI GAANNNNTTC 1 cut(s) 116
PfeI GAWTC 1 cut(s) 47
PkrI GCNGC 4 cut(s) 133, 583, 586, 678
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
PpuMI RGGWCCY 1 cut(s) 286
PsiI TTATAA 1 cut(s) 591
Psp5II RGGWCCY 1 cut(s) 286
Psp6I CCWGG 1 cut(s) 64
PspFI CCCAGC 1 cut(s) 90
PspGI CCWGG 1 cut(s) 64
PspN4I GGNNCC 1 cut(s) 288
PspPI GGNCC 2 cut(s) 88, 286
PspPPI RGGWCCY 1 cut(s) 286
PsuI RGATCY 1 cut(s) 61
PvuII CAGCTG 1 cut(s) 317
RsaI GTAC 2 cut(s) 173, 569
RsaNI GTAC 2 cut(s) 172, 568
SaqAI TTAA 4 cut(s) 195, 434, 483, 671
SatI GCNGC 4 cut(s) 132, 582, 585, 677
Sau3AI GATC 3 cut(s) 61, 450, 613
Sau96I GGNCC 2 cut(s) 88, 286
SchI GAGTC 1 cut(s) 304
ScrFI CCNGG 3 cut(s) 66, 255, 256
SetI ASST 8 cut(s) 133, 159, 169, 319, 335, 344, 498, 671
SinI GGWCC 1 cut(s) 286
SmaI CCCGGG 1 cut(s) 256
SmlI CTYRAG 1 cut(s) 225
SmoI CTYRAG 1 cut(s) 225
Sse9I AATT 2 cut(s) 113, 438
SsiI CCGC 1 cut(s) 37
SspMI CTAG 1 cut(s) 405
StyD4I CCNGG 3 cut(s) 64, 253, 254
TaaI ACNGT 2 cut(s) 422, 524
TaiI ACGT 1 cut(s) 344
TaqI TCGA 2 cut(s) 45, 442
TasI AATT 2 cut(s) 113, 438
TfiI GAWTC 1 cut(s) 47
Tru1I TTAA 4 cut(s) 195, 434, 483, 671
Tru9I TTAA 4 cut(s) 195, 434, 483, 671
TscAI CASTG 3 cut(s) 141, 471, 529
TseFI GTSAC 2 cut(s) 524, 635
TseI GCWGC 4 cut(s) 131, 581, 584, 676
Tsp45I GTSAC 2 cut(s) 524, 635
TspDTI ATGAA 1 cut(s) 570
TspGWI ACGGA 1 cut(s) 251
TspMI CCCGGG 1 cut(s) 254
TspRI CASTG 3 cut(s) 141, 471, 529
VpaK11BI GGWCC 1 cut(s) 286
XapI RAATTY 1 cut(s) 113
XmaI CCCGGG 1 cut(s) 254
XmiI GTMKAC 1 cut(s) 141
XmnI GAANNNNTTC 1 cut(s) 116
XspI CTAG 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.