Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Reverse (-)

62789525 .. 62790890

Gene Structure 1366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG443200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGATTGAAGAACATGAGCCCATATGGAGCAAAGAAATCGGGACGGAGATTGATTGGTATCCCGGGCAAAGCTTGACAATCAGTCCAAGAAAGGACCCAAAGAATGCCAAGTCCATGACTGCAGCTGATATTTGTTACAGCTTCTTTACGTTCTTCAAACCTCCCCAACATGATGATTATACCGGGGCAGATATGGTTTCTATGTTCAAGACTAGGATAGAAAACGACCGTGAAATGGGCTTAACAATTCGAGACAAGATCATCCCTTACGCGGTGTCATGGTTCACTGGGGAAGCTGTTAAAGGATACGAGTTTGAAGATGACGATGATAGTGAAGACGATGATGACAGTGACTATTATTTTTACTCTGATAGAGATGATGAGGACGAGGAGGGTGCTGCTGCTGAAGACAAAAAAAGAGAGGAGGAAGATGGCAAAAGAAAGGAATTAAGTAGATGGACTAATGCTGAGAAAGCAATGGCTGTGCTAACGCTGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

166

Amino Acids

19.33

Weight (kDa)

4.3

Isoelectric Point (pI)

47.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	5 - 98	2.7e-18	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	272
AciI	CCGC	1 cut(s)	272
AcuI	CTGAAG	1 cut(s)	426
AfiI	CCNNNNNNNGG	2 cut(s)	235, 271
AgsI	TTSAA	4 cut(s)	8, 157, 208, 317
AhdI	GACNNNNNGTC	1 cut(s)	81
AluBI	AGCT	4 cut(s)	72, 125, 141, 296
AluI	AGCT	4 cut(s)	72, 125, 141, 296
Alw26I	GTCTC	1 cut(s)	246
Ama87I	CYCGRG	1 cut(s)	62
ApeKI	GCWGC	4 cut(s)	122, 398, 401, 493
AspS9I	GGNCC	1 cut(s)	94
AsuC2I	CCSGG	3 cut(s)	63, 64, 184
AvaI	CYCGRG	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	94
BanII	GRGCYC	1 cut(s)	21
BbsI	GAAGAC	2 cut(s)	342, 414
BbvI	GCAGC	4 cut(s)	134, 385, 388, 480
BccI	CCATC	2 cut(s)	425, 450
BcgI	CGANNNNNNTGC	4 cut(s)	19, 53, 377, 411
BciVI	GTATCC	2 cut(s)	69, 299
BcnI	CCSGG	3 cut(s)	63, 64, 184
BcoDI	GTCTC	1 cut(s)	246
BfaI	CTAG	1 cut(s)	213
BfmI	CTRYAG	1 cut(s)	120
BfuI	GTATCC	2 cut(s)	69, 299
BisI	GCNGC	4 cut(s)	123, 399, 402, 494
BlsI	GCNGC	4 cut(s)	124, 400, 403, 495
Bme1390I	CCNGG	3 cut(s)	63, 64, 184
Bme18I	GGWCC	1 cut(s)	94
BmeRI	GACNNNNNGTC	1 cut(s)	81
BmeT110I	CYCGRG	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	94
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	3 cut(s)	63, 64, 184
BmrI	ACTGGG	1 cut(s)	297
BmuI	ACTGGG	1 cut(s)	297
BpiI	GAAGAC	2 cut(s)	342, 414
BpuMI	CCSGG	3 cut(s)	63, 64, 184
BsaBI	GATNNNNATC	1 cut(s)	57
BsaJI	CCNNGG	2 cut(s)	62, 183
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 271
Bse1I	ACTGG	1 cut(s)	292
Bse3DI	GCAATG	1 cut(s)	483
Bse8I	GATNNNNATC	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	62, 183
BseGI	GGATG	1 cut(s)	261
BseJI	GATNNNNATC	1 cut(s)	57
BseLI	CCNNNNNNNGG	2 cut(s)	235, 271
BseMI	GCAATG	1 cut(s)	483
BseMII	CTCAG	1 cut(s)	459
BseNI	ACTGG	1 cut(s)	292
BseRI	GAGGAG	2 cut(s)	404, 437
BseXI	GCAGC	4 cut(s)	134, 385, 388, 480
Bsh1236I	CGCG	1 cut(s)	272
Bsh1285I	CGRYCG	1 cut(s)	229
BsiEI	CGRYCG	1 cut(s)	229
BsiHKCI	CYCGRG	1 cut(s)	62
BsiSI	CCGG	2 cut(s)	63, 183
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	2 cut(s)	235, 271
BsmAI	GTCTC	1 cut(s)	246
BsmFI	GGGAC	1 cut(s)	55
BsmI	GAATGC	1 cut(s)	109
BsoBI	CYCGRG	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	1 cut(s)	258
BspACI	CCGC	1 cut(s)	272
BspCNI	CTCAG	1 cut(s)	460
BspFNI	CGCG	1 cut(s)	272
BspLI	GGNNCC	1 cut(s)	96
BspMAI	CTGCAG	1 cut(s)	124
BsrDI	GCAATG	1 cut(s)	483
BsrI	ACTGG	1 cut(s)	292
BssECI	CCNNGG	2 cut(s)	62, 183
BssMI	GATC	1 cut(s)	258
Bst4CI	ACNGT	2 cut(s)	230, 350
BstDEI	CTNAG	1 cut(s)	468
BstF5I	GGATG	1 cut(s)	261
BstFNI	CGCG	1 cut(s)	272
BstKTI	GATC	1 cut(s)	261
BstMAI	GTCTC	1 cut(s)	246
BstMBI	GATC	1 cut(s)	258
BstMCI	CGRYCG	1 cut(s)	229
BstMWI	GCNNNNNNNGC	2 cut(s)	473, 493
BstSCI	CCNGG	3 cut(s)	61, 62, 182
BstSFI	CTRYAG	1 cut(s)	120
BstUI	CGCG	1 cut(s)	272
BstV1I	GCAGC	4 cut(s)	134, 385, 388, 480
BstV2I	GAAGAC	2 cut(s)	342, 414
BsuI	GTATCC	2 cut(s)	69, 299
BtsCI	GGATG	1 cut(s)	261
BtsIMutI	CAGTG	2 cut(s)	285, 355
Cfr13I	GGNCC	1 cut(s)	94
Cfr9I	CCCGGG	1 cut(s)	62
CviAII	CATG	4 cut(s)	14, 115, 170, 279
CviJI	RGCY	7 cut(s)	19, 72, 125, 141, 240, 296, 482
CviKI_1	RGCY	7 cut(s)	19, 72, 125, 141, 240, 296, 482
DdeI	CTNAG	1 cut(s)	468
DpnI	GATC	1 cut(s)	260
DpnII	GATC	1 cut(s)	258
DriI	GACNNNNNGTC	1 cut(s)	81
Eam1105I	GACNNNNNGTC	1 cut(s)	81
Eco24I	GRGCYC	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	426
Eco88I	CYCGRG	1 cut(s)	62
EcoO109I	RGGNCCY	1 cut(s)	94
EcoT38I	GRGCYC	1 cut(s)	21
FaeI	CATG	4 cut(s)	17, 118, 173, 282
FaiI	YATR	9 cut(s)	15, 23, 25, 116, 171, 180, 194, 203, 280
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	4 cut(s)	13, 114, 169, 278
FauNDI	CATATG	1 cut(s)	23
Fnu4HI	GCNGC	4 cut(s)	123, 399, 402, 494
FokI	GGATG	1 cut(s)	248
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	4 cut(s)	123, 399, 402, 494
FspBI	CTAG	1 cut(s)	213
GluI	GCNGC	4 cut(s)	123, 399, 402, 494
HapII	CCGG	2 cut(s)	63, 183
Hin1II	CATG	4 cut(s)	17, 118, 173, 282
HindIII	AAGCTT	1 cut(s)	70
HpaII	CCGG	2 cut(s)	63, 183
Hpy166II	GTNNAC	1 cut(s)	285
Hpy188I	TCNGA	1 cut(s)	370
Hpy188III	TCNNGA	3 cut(s)	40, 208, 251
Hpy8I	GTNNAC	1 cut(s)	285
HpyCH4III	ACNGT	2 cut(s)	230, 350
HpyCH4IV	ACGT	1 cut(s)	149
HpyCH4V	TGCA	2 cut(s)	122, 496
HpyF10VI	GCNNNNNNNGC	2 cut(s)	473, 493
HpyF3I	CTNAG	1 cut(s)	468
HpySE526I	ACGT	1 cut(s)	149
Hsp92II	CATG	4 cut(s)	17, 118, 173, 282
Kzo9I	GATC	1 cut(s)	258
LmnI	GCTCC	1 cut(s)	27
LpnPI	CCDG	3 cut(s)	76, 196, 273
Lsp1109I	GCAGC	4 cut(s)	134, 385, 388, 480
MaeI	CTAG	1 cut(s)	213
MaeII	ACGT	1 cut(s)	149
MaeIII	GTNAC	2 cut(s)	134, 350
MalI	GATC	1 cut(s)	260
MboI	GATC	1 cut(s)	258
MboII	GAAGA	6 cut(s)	20, 145, 329, 347, 419, 440
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	2 cut(s)	246, 446
MnlI	CCTC	6 cut(s)	171, 376, 382, 385, 415, 418
MseI	TTAA	3 cut(s)	242, 300, 449
MspA1I	CMGCKG	1 cut(s)	125
MspI	CCGG	2 cut(s)	63, 183
MspR9I	CCNGG	3 cut(s)	63, 64, 184
Mva1269I	GAATGC	1 cut(s)	109
MvnI	CGCG	1 cut(s)	272
MwoI	GCNNNNNNNGC	2 cut(s)	473, 493
NciI	CCSGG	3 cut(s)	63, 64, 184
NdeI	CATATG	1 cut(s)	23
NdeII	GATC	1 cut(s)	258
NlaIII	CATG	4 cut(s)	17, 118, 173, 282
NlaIV	GGNNCC	1 cut(s)	96
NmuCI	GTSAC	1 cut(s)	350
PctI	GAATGC	1 cut(s)	109
PkrI	GCNGC	4 cut(s)	124, 400, 403, 495
PpuMI	RGGWCCY	1 cut(s)	94
Psp5II	RGGWCCY	1 cut(s)	94
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	94
PspPPI	RGGWCCY	1 cut(s)	94
PstI	CTGCAG	1 cut(s)	124
PvuII	CAGCTG	1 cut(s)	125
SaqAI	TTAA	3 cut(s)	242, 300, 449
SatI	GCNGC	4 cut(s)	123, 399, 402, 494
Sau3AI	GATC	1 cut(s)	258
Sau96I	GGNCC	1 cut(s)	94
ScrFI	CCNGG	3 cut(s)	63, 64, 184
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	6 cut(s)	74, 127, 143, 152, 163, 298
SfcI	CTRYAG	1 cut(s)	120
SinI	GGWCC	1 cut(s)	94
SmaI	CCCGGG	1 cut(s)	64
Sse9I	AATT	2 cut(s)	246, 446
SsiI	CCGC	1 cut(s)	272
SspMI	CTAG	1 cut(s)	213
StyD4I	CCNGG	3 cut(s)	61, 62, 182
TaaI	ACNGT	2 cut(s)	230, 350
TaiI	ACGT	1 cut(s)	152
TaqI	TCGA	1 cut(s)	250
TasI	AATT	2 cut(s)	246, 446
Tru1I	TTAA	3 cut(s)	242, 300, 449
Tru9I	TTAA	3 cut(s)	242, 300, 449
TscAI	CASTG	2 cut(s)	292, 355
TseFI	GTSAC	1 cut(s)	350
TseI	GCWGC	4 cut(s)	122, 398, 401, 493
Tsp45I	GTSAC	1 cut(s)	350
TspGWI	ACGGA	1 cut(s)	59
TspMI	CCCGGG	1 cut(s)	62
TspRI	CASTG	2 cut(s)	292, 355
VpaK11BI	GGWCC	1 cut(s)	94
XmaI	CCCGGG	1 cut(s)	62
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.