Rh5AG420500

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000381
Physical Location & Seq
Forward (+)
72494017 .. 72503427
9411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG420500.1

Sequence Viewer

Length: 1326 bp
ATGAAAATCCCAAAAGCGATGCTTGAAACACAGAACCGGAGCAATTCCCTAAGTCGGTCCAAGCTAATTGGCCGTTGCATAGTCTCCTGTATCTTCGTCTTTCTCACTCACTTGGCTCTCTCTGTGATCCCTCGCTTCTTCTCCGCTTTCTCCTTTCTAACCCAACTCGCTCTCTCGGCTCTGCTGCTTCTGCTGCTCGTGGGTTTTGGCGGATGGTGCAGAAGAACGCTTCTTAGAGCAAAAGCTTCGGCTCCGGCTTTGGTCTTCTTCAATATTCTCTTCATTTGGGGGTTTTACTTCTCTGTTATCCGACCAGCTGTGCCGCAACTAAACGATGCCGTTTTCAACTGTGGAGTCGTGTTCCTCGTTATTGGTCTCTATAGTATCATAACAAGTGACCCTGGCATTGTTACAAATGGGTCTGCCTATCCAGACCAGCCTATGGAGAGCTCACTTTCTCAAGTTGATAAGTTGCTGCCAAATCCAGGATCTTGGATAGACCCTCAGAGAATGAGCAAAGACATGGATAACATCAATTTAGCTGGCCAGCATACCAGGGACATCCTTGAGAGCCTACCTCAGAATGTCAGAAAGCGGGTTGAGGCCATTAGAGAAATTGAGAACCAACATCATGAATTAGAGGCAGAGTTTCTCAAGGAGAGAGCTTTACTTGAAGCTAAGTATCATAAATTATATCAACCTCTCTACAGCAAGCGATACTTGATTGTGAATGGTGTTGTTGAAACTGAAGAAGTTGCCACTGAAGCAGCAGCAGATCAAGAGGACAAAACTGCAAAAGAGGGAGGAGTGCCTGATTTCTGGCTCAATGCATTGAAGAACAATGAATTGCTAGCCAAGGAGATCACTGAGCATGATGAAGGAGCTCTTAAATATCTGAGAGACATCAAGTGGTTTAAGATGCATAATTCCAAGGGGTTCAAACTTCAGTTCTACTTTGACACCAATCCATTTTTCAAAAACTCTGTTTTGACAAAGACATATAACATGATTGATGAAGATGAACCAAATAACGTAGCAGGGACGGAGATTGAATGGTATCCAGCAAAATGCCTGACACAGAAGATTCTTAAGAAGAAGCGTAAGAAGGGATCGAAGAATTCTAAGCCTCTGACTAAAACTGAAAATTGTAAAAGTTTCTTCAATTTCTTTAGTCCACCTCAAGTCTCCAAGAACGATGAAATTATTGATGAATTTGCTGCCGAGGAACTCAAAAACCAGAAGAAACAGGACTATGATGTCGGGTCAACCATTCGTCATAAGATCATCCCACATGCAGTTTCGTGGTTTACTGGAGAAGCTTTTTAG

Protein Analysis

441

Amino Acids

50.31

Weight (kDa)

8.66

Isoelectric Point (pI)

38.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 198 - 439 3.3e-78 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000381)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1256
AccB7I CCANNNNNTGG 1 cut(s) 442
AciI CCGC 4 cut(s) 144, 210, 323, 595
AclWI GGATC 3 cut(s) 121, 496, 1117
AcoI YGGCCR 2 cut(s) 70, 544
AcsI RAATTY 2 cut(s) 1117, 1211
AcuI CTGAAG 3 cut(s) 768, 783, 929
AfiI CCNNNNNNNGG 3 cut(s) 54, 442, 485
AflII CTTAAG 1 cut(s) 1088
AjnI CCWGG 3 cut(s) 400, 484, 554
AjuI GAANNNNNNNTTGG 2 cut(s) 956, 988
AluBI AGCT 9 cut(s) 64, 245, 317, 450, 542, 665, 677, 884, 1319
AluI AGCT 9 cut(s) 64, 245, 317, 450, 542, 665, 677, 884, 1319
Alw21I GWGCWC 2 cut(s) 452, 886
Alw26I GTCTC 4 cut(s) 88, 380, 894, 1189
AlwI GGATC 3 cut(s) 121, 496, 1117
AoxI GGCC 3 cut(s) 70, 544, 603
ApeKI GCWGC 6 cut(s) 184, 193, 475, 767, 770, 1217
ApoI RAATTY 2 cut(s) 1117, 1211
AspS9I GGNCC 1 cut(s) 57
AsuNHI GCTAGC 1 cut(s) 850
AvaII GGWCC 1 cut(s) 57
BalI TGGCCA 1 cut(s) 546
BanII GRGCYC 2 cut(s) 452, 886
BauI CACGAG 1 cut(s) 197
BbsI GAAGAC 1 cut(s) 256
Bbv12I GWGCWC 2 cut(s) 452, 886
BbvI GCAGC 6 cut(s) 171, 180, 462, 779, 782, 1204
BccI CCATC 1 cut(s) 207
BceAI ACGGC 2 cut(s) 57, 323
BcgI CGANNNNNNTGC 2 cut(s) 228, 262
BciT130I CCWGG 3 cut(s) 402, 486, 556
BciVI GTATCC 1 cut(s) 1068
BcoDI GTCTC 4 cut(s) 88, 380, 894, 1189
BfaI CTAG 1 cut(s) 851
BfmI CTRYAG 2 cut(s) 379, 706
BfrI CTTAAG 1 cut(s) 1088
BfuI GTATCC 1 cut(s) 1068
BisI GCNGC 7 cut(s) 185, 194, 323, 476, 768, 771, 1218
BlsI GCNGC 7 cut(s) 186, 195, 324, 477, 769, 772, 1219
Bme1390I CCNGG 3 cut(s) 402, 486, 556
Bme18I GGWCC 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 57
BmiI GGNNCC 1 cut(s) 252
BmrFI CCNGG 3 cut(s) 402, 486, 556
BmsI GCATC 3 cut(s) 9, 325, 909
BmtI GCTAGC 1 cut(s) 854
BpiI GAAGAC 1 cut(s) 256
BplI GAGNNNNNCTC 2 cut(s) 562, 594
BpuEI CTTGAG 4 cut(s) 444, 587, 638, 1164
BsaI GGTCTC 1 cut(s) 380
BsaJI CCNNGG 5 cut(s) 400, 555, 855, 930, 1221
BsaWI WCCGGW 1 cut(s) 36
Bsc4I CCNNNNNNNGG 3 cut(s) 54, 442, 485
Bse1I ACTGG 1 cut(s) 1315
BseBI CCWGG 3 cut(s) 402, 486, 556
BseDI CCNNGG 5 cut(s) 400, 555, 855, 930, 1221
BseGI GGATG 3 cut(s) 218, 561, 1284
BseLI CCNNNNNNNGG 3 cut(s) 54, 442, 485
BseMII CTCAG 4 cut(s) 518, 593, 858, 887
BseNI ACTGG 1 cut(s) 1315
BseRI GAGGAG 1 cut(s) 819
BseXI GCAGC 6 cut(s) 171, 180, 462, 779, 782, 1204
BsgI GTGCAG 1 cut(s) 238
BshFI GGCC 3 cut(s) 72, 546, 605
BsiHKAI GWGCWC 2 cut(s) 452, 886
BsiSI CCGG 2 cut(s) 37, 254
BslFI GGGAC 2 cut(s) 572, 1054
BslI CCNNNNNNNGG 3 cut(s) 54, 442, 485
BsmAI GTCTC 4 cut(s) 88, 380, 894, 1189
BsmFI GGGAC 2 cut(s) 572, 1054
BsnI GGCC 3 cut(s) 72, 546, 605
Bso31I GGTCTC 1 cut(s) 380
Bsp1286I GDGCHC 2 cut(s) 452, 886
Bsp143I GATC 6 cut(s) 126, 488, 775, 861, 1109, 1281
BspACI CCGC 4 cut(s) 144, 210, 323, 595
BspANI GGCC 3 cut(s) 72, 546, 605
BspCNI CTCAG 4 cut(s) 517, 592, 859, 888
BspHI TCATGA 1 cut(s) 631
BspLI GGNNCC 1 cut(s) 252
BspOI GCTAGC 1 cut(s) 854
BspPI GGATC 3 cut(s) 121, 496, 1117
BspTI CTTAAG 1 cut(s) 1088
BspTNI GGTCTC 1 cut(s) 380
BsrI ACTGG 1 cut(s) 1315
BssECI CCNNGG 5 cut(s) 400, 555, 855, 930, 1221
BssMI GATC 6 cut(s) 126, 488, 775, 861, 1109, 1281
BssSI CACGAG 1 cut(s) 197
BssT1I CCWWGG 2 cut(s) 855, 930
Bst2BI CACGAG 1 cut(s) 197
Bst2UI CCWGG 3 cut(s) 402, 486, 556
Bst4CI ACNGT 1 cut(s) 350
Bst6I CTCTTC 1 cut(s) 284
BstAFI CTTAAG 1 cut(s) 1088
BstC8I GCNNGC 4 cut(s) 544, 548, 713, 852
BstDEI CTNAG 8 cut(s) 50, 233, 504, 579, 678, 867, 896, 1122
BstF5I GGATG 3 cut(s) 218, 561, 1284
BstKTI GATC 6 cut(s) 129, 491, 778, 864, 1112, 1284
BstMAI GTCTC 4 cut(s) 88, 380, 894, 1189
BstMBI GATC 6 cut(s) 126, 488, 775, 861, 1109, 1281
BstMWI GCNNNNNNNGC 5 cut(s) 176, 190, 193, 216, 764
BstNI CCWGG 3 cut(s) 402, 486, 556
BstNSI RCATGY 1 cut(s) 1295
BstSCI CCNGG 3 cut(s) 400, 484, 554
BstSFI CTRYAG 2 cut(s) 379, 706
BstV1I GCAGC 6 cut(s) 171, 180, 462, 779, 782, 1204
BstV2I GAAGAC 1 cut(s) 256
BstX2I RGATCY 1 cut(s) 488
BstXI CCANNNNNNTGG 1 cut(s) 492
BstYI RGATCY 1 cut(s) 488
BsuI GTATCC 1 cut(s) 1068
BsuRI GGCC 3 cut(s) 72, 546, 605
BtgZI GCGATG 1 cut(s) 32
BtsCI GGATG 3 cut(s) 218, 561, 1284
BtsIMutI CAGTG 2 cut(s) 759, 864
Cac8I GCNNGC 4 cut(s) 544, 548, 713, 852
CciI TCATGA 1 cut(s) 631
Cfr13I GGNCC 1 cut(s) 57
CviAII CATG 5 cut(s) 523, 632, 872, 1006, 1292
DdeI CTNAG 8 cut(s) 50, 233, 504, 579, 678, 867, 896, 1122
DpnI GATC 6 cut(s) 128, 490, 777, 863, 1111, 1283
DpnII GATC 6 cut(s) 126, 488, 775, 861, 1109, 1281
DrdI GACNNNNNNGTC 1 cut(s) 1256
DseDI GACNNNNNNGTC 1 cut(s) 1256
EaeI YGGCCR 2 cut(s) 70, 544
Eam1104I CTCTTC 1 cut(s) 284
EarI CTCTTC 1 cut(s) 284
EciI GGCGGA 1 cut(s) 225
Ecl136II GAGCTC 2 cut(s) 450, 884
Eco130I CCWWGG 2 cut(s) 855, 930
Eco24I GRGCYC 2 cut(s) 452, 886
Eco31I GGTCTC 1 cut(s) 380
Eco47I GGWCC 1 cut(s) 57
Eco53kI GAGCTC 2 cut(s) 450, 884
Eco57I CTGAAG 3 cut(s) 768, 783, 929
EcoICRI GAGCTC 2 cut(s) 450, 884
EcoRI GAATTC 1 cut(s) 1117
EcoRII CCWGG 3 cut(s) 400, 484, 554
EcoT14I CCWWGG 2 cut(s) 855, 930
EcoT22I ATGCAT 2 cut(s) 832, 924
EcoT38I GRGCYC 2 cut(s) 452, 886
ErhI CCWWGG 2 cut(s) 855, 930
FaeI CATG 5 cut(s) 526, 635, 875, 1009, 1295
FalI AAGNNNNNCTT 5 cut(s) 38, 704, 736, 870, 902
FaqI GGGAC 2 cut(s) 572, 1054
FatI CATG 5 cut(s) 522, 631, 871, 1005, 1291
FauI CCCGC 1 cut(s) 588
Fnu4HI GCNGC 7 cut(s) 185, 194, 323, 476, 768, 771, 1218
FokI GGATG 3 cut(s) 225, 548, 1271
FriOI GRGCYC 2 cut(s) 452, 886
Fsp4HI GCNGC 7 cut(s) 185, 194, 323, 476, 768, 771, 1218
FspBI CTAG 1 cut(s) 851
GluI GCNGC 7 cut(s) 185, 194, 323, 476, 768, 771, 1218
HaeIII GGCC 3 cut(s) 72, 546, 605
HapII CCGG 2 cut(s) 37, 254
Hin1II CATG 5 cut(s) 526, 635, 875, 1009, 1295
HincII GTYRAC 1 cut(s) 1266
HindII GTYRAC 1 cut(s) 1266
HindIII AAGCTT 2 cut(s) 243, 1317
HinfI GANTC 2 cut(s) 354, 1084
HpaII CCGG 2 cut(s) 37, 254
Hpy166II GTNNAC 3 cut(s) 1175, 1266, 1308
Hpy188I TCNGA 6 cut(s) 311, 507, 582, 590, 897, 1131
Hpy188III TCNNGA 3 cut(s) 431, 632, 779
Hpy8I GTNNAC 3 cut(s) 1175, 1266, 1308
HpyAV CCTTC 2 cut(s) 872, 1099
HpyCH4III ACNGT 1 cut(s) 350
HpyCH4IV ACGT 1 cut(s) 1032
HpyCH4V TGCA 6 cut(s) 78, 219, 794, 830, 922, 1295
HpyF10VI GCNNNNNNNGC 5 cut(s) 176, 190, 193, 216, 764
HpyF3I CTNAG 8 cut(s) 50, 233, 504, 579, 678, 867, 896, 1122
HpySE526I ACGT 1 cut(s) 1032
Hsp92II CATG 5 cut(s) 526, 635, 875, 1009, 1295
Kzo9I GATC 6 cut(s) 126, 488, 775, 861, 1109, 1281
LmnI GCTCC 3 cut(s) 39, 256, 881
Lsp1109I GCAGC 6 cut(s) 171, 180, 462, 779, 782, 1204
LweI GCATC 3 cut(s) 9, 325, 909
MaeI CTAG 1 cut(s) 851
MaeII ACGT 1 cut(s) 1032
MaeIII GTNAC 2 cut(s) 395, 409
MalI GATC 6 cut(s) 128, 490, 777, 863, 1111, 1283
MboI GATC 6 cut(s) 126, 488, 775, 861, 1109, 1281
MflI RGATCY 1 cut(s) 488
MhlI GDGCHC 2 cut(s) 452, 886
MlsI TGGCCA 1 cut(s) 546
MluNI TGGCCA 1 cut(s) 546
MlyI GAGTC 1 cut(s) 363
MmeI TCCRAC 1 cut(s) 334
Mox20I TGGCCA 1 cut(s) 546
Mph1103I ATGCAT 2 cut(s) 832, 924
MscI TGGCCA 1 cut(s) 546
MseI TTAA 3 cut(s) 888, 915, 1089
Msp20I TGGCCA 1 cut(s) 546
MspA1I CMGCKG 1 cut(s) 317
MspCI CTTAAG 1 cut(s) 1088
MspI CCGG 2 cut(s) 37, 254
MspR9I CCNGG 3 cut(s) 402, 486, 556
MvaI CCWGG 3 cut(s) 402, 486, 556
MwoI GCNNNNNNNGC 5 cut(s) 176, 190, 193, 216, 764
NdeII GATC 6 cut(s) 126, 488, 775, 861, 1109, 1281
NheI GCTAGC 1 cut(s) 850
NlaIII CATG 5 cut(s) 526, 635, 875, 1009, 1295
NlaIV GGNNCC 1 cut(s) 252
NmeAIII GCCGAG 2 cut(s) 155, 1246
NmuCI GTSAC 1 cut(s) 395
NsiI ATGCAT 2 cut(s) 832, 924
NspI RCATGY 1 cut(s) 1295
PagI TCATGA 1 cut(s) 631
PcsI WCGNNNNNNNCGW 1 cut(s) 363
PfeI GAWTC 1 cut(s) 1084
PflMI CCANNNNNTGG 1 cut(s) 442
PfoI TCCNGGA 1 cut(s) 484
PkrI GCNGC 7 cut(s) 186, 195, 324, 477, 769, 772, 1219
PleI GAGTC 1 cut(s) 362
PpsI GAGTC 1 cut(s) 362
Psp124BI GAGCTC 2 cut(s) 452, 886
Psp6I CCWGG 3 cut(s) 400, 484, 554
PspGI CCWGG 3 cut(s) 400, 484, 554
PspN4I GGNNCC 1 cut(s) 252
PspPI GGNCC 1 cut(s) 57
PsuI RGATCY 1 cut(s) 488
PvuII CAGCTG 1 cut(s) 317
SacI GAGCTC 2 cut(s) 452, 886
SaqAI TTAA 3 cut(s) 888, 915, 1089
SatI GCNGC 7 cut(s) 185, 194, 323, 476, 768, 771, 1218
Sau3AI GATC 6 cut(s) 126, 488, 775, 861, 1109, 1281
Sau96I GGNCC 1 cut(s) 57
SchI GAGTC 1 cut(s) 363
ScrFI CCNGG 3 cut(s) 402, 486, 556
SduI GDGCHC 2 cut(s) 452, 886
SfaNI GCATC 3 cut(s) 9, 325, 909
SfcI CTRYAG 2 cut(s) 379, 706
SinI GGWCC 1 cut(s) 57
SmlI CTYRAG 5 cut(s) 459, 566, 653, 1088, 1179
SmoI CTYRAG 5 cut(s) 459, 566, 653, 1088, 1179
SsiI CCGC 4 cut(s) 144, 210, 323, 595
SspI AATATT 1 cut(s) 274
SspMI CTAG 1 cut(s) 851
SstI GAGCTC 2 cut(s) 452, 886
StyD4I CCNGG 3 cut(s) 400, 484, 554
StyI CCWWGG 2 cut(s) 855, 930
TaaI ACNGT 1 cut(s) 350
TaiI ACGT 1 cut(s) 1035
TaqI TCGA 1 cut(s) 1112
TaqII GACCGA 1 cut(s) 45
TauI GCSGC 1 cut(s) 325
TfiI GAWTC 1 cut(s) 1084
Tru1I TTAA 3 cut(s) 888, 915, 1089
Tru9I TTAA 3 cut(s) 888, 915, 1089
TscAI CASTG 2 cut(s) 766, 871
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 6 cut(s) 184, 193, 475, 767, 770, 1217
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 9 cut(s) 17, 271, 648, 858, 891, 1029, 1035, 1212, 1224
TspGWI ACGGA 1 cut(s) 1058
TspRI CASTG 2 cut(s) 766, 871
Van91I CCANNNNNTGG 1 cut(s) 442
Vha464I CTTAAG 1 cut(s) 1088
VpaK11BI GGWCC 1 cut(s) 57
XapI RAATTY 2 cut(s) 1117, 1211
XceI RCATGY 1 cut(s) 1295
XspI CTAG 1 cut(s) 851
Zsp2I ATGCAT 2 cut(s) 832, 924
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.