Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Forward (+)

13232545 .. 13235908

Gene Structure 3364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G26110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGAGCAACGACAAGGATAGCTTCAACGTCTCCGATCTTACTGCTGCTCTTAAGGACGAGGATCGAGCTGGCCTTGTCAATGCTCTAAAGAACAAGCTGCAGAATCTGGCTGGTCAGCGTTCTGATGTGCTCGAGAATCTGACTCCCAATGTGAGAAAGCGCGTTGATGCCTTGAGGGATATACAGAGCCAACATGATGAACTAGAGGCAAAATTCCGTGAGGAGAGAGCTATTCTTGAAGCCAAGTATCAAACGCTGTATCAGCCTTTGTATGTCAAGCGTTATGAGATTGTGAATGGCACTACTGAAGTTGAACTGGCTCCAGAGGATGATACCAAGGTGGACCAAGGAGAGGAGAAAACTGCAGAAGAGAAAGGAGTTCCAAGTTTCTGGCTGACAGCTCTGAAAAATAACGATGTTATTTCCGAGGAGGTCACAGAGCGTGATGAAGGGGCTCTCAAATATCTTAAAGATATTAAGTGGTGCAAGATTGAAGAGCCTAAAGGATTCAAACTTGAGTTTTTCTTTGACACGAATCCGTATTTTAAGAACACTGTCTTGACAAAGTCTTATCATATGATTGATGAAGATGAGCCACTGCTTGAGAAGGCTATGGGGACAGAAATTGATTGGTATCCTGGAAAGTGTCTAACTCAGAAGATTCTCAAGAAGAAGCCTAAGAAAGGTTCAAAGAATACTAAACCAATCACCAAACTCGAAGATTGTGAAAGCTTCTTCAACTTCTTTAGTCCTCCAGAAGTTCCGGATGAAGATGAAGATATCGACGAGGAAAGAGCTGAGGATCTTCAAAACCTGATGGAACAAGATTATGACATCGGATCTACTATTCGGGAAAAGATTATTCCTCGTGCTGTCTCATGGTTTACTGGTGAGGCTATGGAAGCAGAGGATTTTGAAATAGATGACGATGAGGAAGATGACATTGATGAGGATGAAGATGAGGAAGACGAAGAGGATGAGGAGGACGATGATGATGAGGATGAAGAAGAAAGCAAGACCAAAAAGAAGCCATCAATCGGCAACAAGAAGGGAGGGAGATCTCAGATAGTTGGTGAAGGTAAACAAGATGAGAGGCCACCCGAATGCAAGCAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008283 GO:0009987 GO:0016020 GO:0016444 GO:0030154 GO:0032502 GO:0033554 GO:0034641 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048869 GO:0050896 GO:0051716 GO:0071704 GO:0071944 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

372

Amino Acids

43.0

Weight (kDa)

4.38

Isoelectric Point (pI)

48.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	53 - 298	3.8e-90	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	162
AccIII	TCCGGA	1 cut(s)	763
AclWI	GGATC	3 cut(s)	69, 810, 847
AcsI	RAATTY	1 cut(s)	212
AcuI	CTGAAG	1 cut(s)	327
AfiI	CCNNNNNNNGG	3 cut(s)	352, 683, 1037
AflII	CTTAAG	1 cut(s)	50
AgsI	TTSAA	9 cut(s)	25, 239, 314, 494, 511, 690, 739, 809, 917
AjnI	CCWGG	1 cut(s)	637
AluBI	AGCT	7 cut(s)	21, 68, 97, 230, 401, 732, 797
AluI	AGCT	7 cut(s)	21, 68, 97, 230, 401, 732, 797
Alw21I	GWGCWC	1 cut(s)	132
Alw26I	GTCTC	2 cut(s)	34, 880
AlwI	GGATC	3 cut(s)	69, 810, 847
AlwNI	CAGNNNCTG	1 cut(s)	106
Ama87I	CYCGRG	1 cut(s)	131
Aor13HI	TCCGGA	1 cut(s)	763
AoxI	GGCC	2 cut(s)	70, 1094
ApeKI	GCWGC	2 cut(s)	44, 97
ApoI	RAATTY	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	162
AspS9I	GGNCC	1 cut(s)	343
AsuHPI	GGTGA	3 cut(s)	700, 902, 1085
AvaI	CYCGRG	1 cut(s)	131
AvaII	GGWCC	1 cut(s)	343
BaeI	ACNNNNGTAYC	2 cut(s)	324, 357
BanII	GRGCYC	1 cut(s)	457
BauI	CACGAG	1 cut(s)	867
BbsI	GAAGAC	1 cut(s)	972
Bbv12I	GWGCWC	1 cut(s)	132
BbvCI	CCTCAGC	1 cut(s)	798
BbvI	GCAGC	2 cut(s)	31, 84
BccI	CCATC	2 cut(s)	811, 1039
BcgI	CGANNNNNNTGC	2 cut(s)	23, 57
BciT130I	CCWGG	1 cut(s)	639
BciVI	GTATCC	1 cut(s)	645
BcoDI	GTCTC	2 cut(s)	34, 880
BfaI	CTAG	1 cut(s)	203
BfmI	CTRYAG	2 cut(s)	98, 363
BfrI	CTTAAG	1 cut(s)	50
BfuI	GTATCC	1 cut(s)	645
BglII	AGATCT	1 cut(s)	1058
BisI	GCNGC	2 cut(s)	45, 98
BlsI	GCNGC	2 cut(s)	46, 99
Bme1390I	CCNGG	1 cut(s)	639
Bme18I	GGWCC	1 cut(s)	343
BmeT110I	CYCGRG	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	343
BmiI	GGNNCC	1 cut(s)	321
BmrFI	CCNGG	1 cut(s)	639
BmsI	GCATC	1 cut(s)	157
BpiI	GAAGAC	1 cut(s)	972
BpmI	CTGGAG	2 cut(s)	306, 738
Bpu10I	CCTNAGC	1 cut(s)	798
BpuEI	CTTGAG	4 cut(s)	193, 536, 623, 650
BsaBI	GATNNNNATC	1 cut(s)	633
BsaJI	CCNNGG	3 cut(s)	336, 346, 426
BsaWI	WCCGGW	1 cut(s)	763
Bsc4I	CCNNNNNNNGG	3 cut(s)	352, 683, 1037
Bse1I	ACTGG	2 cut(s)	321, 892
Bse8I	GATNNNNATC	1 cut(s)	633
BseAI	TCCGGA	1 cut(s)	763
BseBI	CCWGG	1 cut(s)	639
BseDI	CCNNGG	3 cut(s)	336, 346, 426
BseGI	GGATG	5 cut(s)	334, 772, 958, 982, 1006
BseJI	GATNNNNATC	1 cut(s)	633
BseLI	CCNNNNNNNGG	3 cut(s)	352, 683, 1037
BseMII	CTCAG	3 cut(s)	668, 789, 1076
BseNI	ACTGG	2 cut(s)	321, 892
BseRI	GAGGAG	4 cut(s)	236, 368, 443, 995
BseXI	GCAGC	2 cut(s)	31, 84
Bsh1236I	CGCG	1 cut(s)	162
BshFI	GGCC	2 cut(s)	72, 1096
BsiHKAI	GWGCWC	1 cut(s)	132
BsiHKCI	CYCGRG	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	764
BslFI	GGGAC	1 cut(s)	631
BslI	CCNNNNNNNGG	3 cut(s)	352, 683, 1037
BsmAI	GTCTC	2 cut(s)	34, 880
BsmBI	CGTCTC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	631
BsmI	GAATGC	1 cut(s)	1109
BsnI	GGCC	2 cut(s)	72, 1096
BsoBI	CYCGRG	1 cut(s)	131
Bsp1286I	GDGCHC	2 cut(s)	132, 457
Bsp13I	TCCGGA	1 cut(s)	763
Bsp143I	GATC	5 cut(s)	34, 61, 802, 839, 1058
BspANI	GGCC	2 cut(s)	72, 1096
BspCNI	CTCAG	3 cut(s)	667, 790, 1075
BspEI	TCCGGA	1 cut(s)	763
BspFNI	CGCG	1 cut(s)	162
BspLI	GGNNCC	1 cut(s)	321
BspMAI	CTGCAG	2 cut(s)	102, 367
BspPI	GGATC	3 cut(s)	69, 810, 847
BspQI	GCTCTTC	1 cut(s)	489
BspTI	CTTAAG	1 cut(s)	50
BsrI	ACTGG	2 cut(s)	321, 892
BssECI	CCNNGG	3 cut(s)	336, 346, 426
BssMI	GATC	5 cut(s)	34, 61, 802, 839, 1058
BssSI	CACGAG	1 cut(s)	867
BssT1I	CCWWGG	2 cut(s)	336, 346
Bst2BI	CACGAG	1 cut(s)	867
Bst2UI	CCWGG	1 cut(s)	639
Bst4CI	ACNGT	2 cut(s)	556, 1116
Bst6I	CTCTTC	3 cut(s)	363, 489, 966
BstAFI	CTTAAG	1 cut(s)	50
BstC8I	GCNNGC	2 cut(s)	70, 1109
BstDEI	CTNAG	4 cut(s)	654, 678, 798, 1062
BstENI	CCTNNNNNAGG	1 cut(s)	681
BstF5I	GGATG	5 cut(s)	334, 772, 958, 982, 1006
BstFNI	CGCG	1 cut(s)	162
BstHHI	GCGC	1 cut(s)	162
BstKTI	GATC	5 cut(s)	37, 64, 805, 842, 1061
BstMAI	GTCTC	2 cut(s)	34, 880
BstMBI	GATC	5 cut(s)	34, 61, 802, 839, 1058
BstMWI	GCNNNNNNNGC	2 cut(s)	262, 902
BstNI	CCWGG	1 cut(s)	639
BstSCI	CCNGG	1 cut(s)	637
BstSFI	CTRYAG	2 cut(s)	98, 363
BstUI	CGCG	1 cut(s)	162
BstV1I	GCAGC	2 cut(s)	31, 84
BstV2I	GAAGAC	1 cut(s)	972
BstX2I	RGATCY	3 cut(s)	802, 839, 1058
BstXI	CCANNNNNNTGG	1 cut(s)	390
BstYI	RGATCY	3 cut(s)	802, 839, 1058
BsuI	GTATCC	1 cut(s)	645
BsuRI	GGCC	2 cut(s)	72, 1096
BtsCI	GGATG	5 cut(s)	334, 772, 958, 982, 1006
BtsI	GCAGTG	1 cut(s)	596
BtsIMutI	CAGTG	2 cut(s)	552, 596
Cac8I	GCNNGC	2 cut(s)	70, 1109
CaiI	CAGNNNCTG	1 cut(s)	106
CfoI	GCGC	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	343
CviAII	CATG	2 cut(s)	194, 879
DdeI	CTNAG	4 cut(s)	654, 678, 798, 1062
DpnI	GATC	5 cut(s)	36, 63, 804, 841, 1060
DpnII	GATC	5 cut(s)	34, 61, 802, 839, 1058
Eam1104I	CTCTTC	3 cut(s)	363, 489, 966
EarI	CTCTTC	3 cut(s)	363, 489, 966
Eco130I	CCWWGG	2 cut(s)	336, 346
Eco24I	GRGCYC	1 cut(s)	457
Eco32I	GATATC	1 cut(s)	781
Eco47I	GGWCC	1 cut(s)	343
Eco57I	CTGAAG	1 cut(s)	327
Eco88I	CYCGRG	1 cut(s)	131
EcoNI	CCTNNNNNAGG	1 cut(s)	681
EcoRII	CCWGG	1 cut(s)	637
EcoRV	GATATC	1 cut(s)	781
EcoT14I	CCWWGG	2 cut(s)	336, 346
EcoT38I	GRGCYC	1 cut(s)	457
ErhI	CCWWGG	2 cut(s)	336, 346
Esp3I	CGTCTC	1 cut(s)	34
FaeI	CATG	2 cut(s)	197, 882
FalI	AAGNNNNNCTT	1 cut(s)	37
FaqI	GGGAC	1 cut(s)	631
FatI	CATG	2 cut(s)	193, 878
FauNDI	CATATG	1 cut(s)	576
Fnu4HI	GCNGC	2 cut(s)	45, 98
FokI	GGATG	5 cut(s)	341, 779, 965, 989, 1013
FriOI	GRGCYC	1 cut(s)	457
Fsp4HI	GCNGC	2 cut(s)	45, 98
FspBI	CTAG	1 cut(s)	203
GlaI	GCGC	1 cut(s)	161
GluI	GCNGC	2 cut(s)	45, 98
GsuI	CTGGAG	2 cut(s)	306, 738
HaeIII	GGCC	2 cut(s)	72, 1096
HapII	CCGG	1 cut(s)	764
HhaI	GCGC	1 cut(s)	162
Hin1II	CATG	2 cut(s)	197, 882
Hin6I	GCGC	1 cut(s)	160
HinP1I	GCGC	1 cut(s)	160
HindIII	AAGCTT	1 cut(s)	730
HinfI	GANTC	6 cut(s)	103, 136, 142, 507, 535, 661
HpaII	CCGG	1 cut(s)	764
HphI	GGTGA	3 cut(s)	700, 902, 1085
Hpy166II	GTNNAC	3 cut(s)	343, 885, 1082
Hpy188I	TCNGA	8 cut(s)	34, 124, 141, 405, 427, 657, 839, 1065
Hpy188III	TCNNGA	8 cut(s)	133, 236, 323, 559, 667, 755, 764, 851
Hpy8I	GTNNAC	3 cut(s)	343, 885, 1082
Hpy99I	CGWCG	1 cut(s)	788
HpyAV	CCTTC	4 cut(s)	443, 601, 1042, 1070
HpyCH4III	ACNGT	2 cut(s)	556, 1116
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	4 cut(s)	100, 365, 486, 1107
HpyF10VI	GCNNNNNNNGC	2 cut(s)	262, 902
HpyF3I	CTNAG	4 cut(s)	654, 678, 798, 1062
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	2 cut(s)	197, 882
HspAI	GCGC	1 cut(s)	160
Kpn2I	TCCGGA	1 cut(s)	763
Kzo9I	GATC	5 cut(s)	34, 61, 802, 839, 1058
LguI	GCTCTTC	1 cut(s)	489
LmnI	GCTCC	1 cut(s)	325
Lsp1109I	GCAGC	2 cut(s)	31, 84
LweI	GCATC	1 cut(s)	157
MaeI	CTAG	1 cut(s)	203
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	433
MalI	GATC	5 cut(s)	36, 63, 804, 841, 1060
MboI	GATC	5 cut(s)	34, 61, 802, 839, 1058
MflI	RGATCY	3 cut(s)	802, 839, 1058
MhlI	GDGCHC	2 cut(s)	132, 457
MluCI	AATT	2 cut(s)	212, 624
MlyI	GAGTC	1 cut(s)	136
MroI	TCCGGA	1 cut(s)	763
MseI	TTAA	4 cut(s)	51, 468, 477, 546
MslI	CAYNNNNRTG	1 cut(s)	1102
MspCI	CTTAAG	1 cut(s)	50
MspI	CCGG	1 cut(s)	764
MspR9I	CCNGG	1 cut(s)	639
Mva1269I	GAATGC	1 cut(s)	1109
MvaI	CCWGG	1 cut(s)	639
MvnI	CGCG	1 cut(s)	162
MwoI	GCNNNNNNNGC	2 cut(s)	262, 902
NdeI	CATATG	1 cut(s)	576
NdeII	GATC	5 cut(s)	34, 61, 802, 839, 1058
NlaIII	CATG	2 cut(s)	197, 882
NlaIV	GGNNCC	1 cut(s)	321
NmuCI	GTSAC	1 cut(s)	433
PaeR7I	CTCGAG	1 cut(s)	131
PciSI	GCTCTTC	1 cut(s)	489
PctI	GAATGC	1 cut(s)	1109
PfeI	GAWTC	5 cut(s)	103, 136, 507, 535, 661
PflFI	GACNNNGTC	1 cut(s)	565
PfoI	TCCNGGA	1 cut(s)	637
PkrI	GCNGC	2 cut(s)	46, 99
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	637
PspGI	CCWGG	1 cut(s)	637
PspN4I	GGNNCC	1 cut(s)	321
PspPI	GGNCC	1 cut(s)	343
PstI	CTGCAG	2 cut(s)	102, 367
PstNI	CAGNNNCTG	1 cut(s)	106
PsuI	RGATCY	3 cut(s)	802, 839, 1058
PsyI	GACNNNGTC	1 cut(s)	565
RseI	CAYNNNNRTG	1 cut(s)	1102
SapI	GCTCTTC	1 cut(s)	489
SaqAI	TTAA	4 cut(s)	51, 468, 477, 546
SatI	GCNGC	2 cut(s)	45, 98
Sau3AI	GATC	5 cut(s)	34, 61, 802, 839, 1058
Sau96I	GGNCC	1 cut(s)	343
SchI	GAGTC	1 cut(s)	136
ScrFI	CCNGG	1 cut(s)	639
SduI	GDGCHC	2 cut(s)	132, 457
SfaNI	GCATC	1 cut(s)	157
SfcI	CTRYAG	2 cut(s)	98, 363
Sfr274I	CTCGAG	1 cut(s)	131
SinI	GGWCC	1 cut(s)	343
SlaI	CTCGAG	1 cut(s)	131
SmiMI	CAYNNNNRTG	1 cut(s)	1102
SmlI	CTYRAG	6 cut(s)	50, 131, 172, 515, 602, 665
SmoI	CTYRAG	6 cut(s)	50, 131, 172, 515, 602, 665
Sse9I	AATT	2 cut(s)	212, 624
SspMI	CTAG	1 cut(s)	203
StyD4I	CCNGG	1 cut(s)	637
StyI	CCWWGG	2 cut(s)	336, 346
TaaI	ACNGT	2 cut(s)	556, 1116
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	4 cut(s)	64, 132, 717, 783
TasI	AATT	2 cut(s)	212, 624
TfiI	GAWTC	5 cut(s)	103, 136, 507, 535, 661
Tru1I	TTAA	4 cut(s)	51, 468, 477, 546
Tru9I	TTAA	4 cut(s)	51, 468, 477, 546
TscAI	CASTG	2 cut(s)	559, 603
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	2 cut(s)	44, 97
Tsp45I	GTSAC	1 cut(s)	433
TspDTI	ATGAA	7 cut(s)	213, 462, 600, 783, 789, 969, 1017
TspGWI	ACGGA	2 cut(s)	206, 528
TspRI	CASTG	2 cut(s)	559, 603
Tth111I	GACNNNGTC	1 cut(s)	565
Vha464I	CTTAAG	1 cut(s)	50
VpaK11BI	GGWCC	1 cut(s)	343
XagI	CCTNNNNNAGG	1 cut(s)	681
XapI	RAATTY	1 cut(s)	212
XhoI	CTCGAG	1 cut(s)	131
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.