Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Reverse (-)

48886578 .. 48887962

Gene Structure 1385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0383400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGAGCAGACCAGGAGATTGGAACTGCAGGTCATGCCAGCACCTCAACTTCCAGAGGCGCGACTCGTGCCAGCGATGTGGAGATGTCAAGTCTGGAGGAGGAGGAGGAGGACTGGACTTTGGGGCTTTTAATGGTGGAAGGCTCGGAGGAGGAGGGTCTTCGTTCGGGTTCGGTAGTGCAACTACTGGCTCGGATGTGAGGCCTGGTGACTGGTACTGCGCTGCCGGCAACTGTGGGGCCCACAATTTTGCCAGCCGCTCTAGCTGCTTCAAGTGTGGTGCTTTCAAGGATGAGTTTGCTGCTACTGGCGGTGGTGGCGGCTTTGACTCTGAAATGACTCGCTCCCGGGGGGGTTTCGGGTTGGGAAATGGCGGTGGTGGCGCTGGTGGTGGTGGTCGGCCTGGATGGAAATCTGGAGATTGGATTTGTACCAGGTTCGGATGCAACGAGCATAACTTTGCTAGCAGAATGGAATGTTTTAGATGCAATGCCCCAAGAGACACATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

169

Amino Acids

17.44

Weight (kDa)

8.66

Isoelectric Point (pI)

53.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_RanBP	PF00641	137 - 166	6.7e-08	Zn-finger in Ran binding protein and others

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	18
AccBSI	CCGCTC	1 cut(s)	258
AccII	CGCG	1 cut(s)	60
AciI	CCGC	4 cut(s)	256, 309, 318, 372
AfaI	GTAC	2 cut(s)	215, 430
AgsI	TTSAA	2 cut(s)	271, 286
AjnI	CCWGG	4 cut(s)	10, 202, 400, 431
AluBI	AGCT	1 cut(s)	264
AluI	AGCT	1 cut(s)	264
Alw26I	GTCTC	1 cut(s)	492
Ama87I	CYCGRG	1 cut(s)	345
AoxI	GGCC	3 cut(s)	200, 237, 398
ApaI	GGGCCC	1 cut(s)	241
ApeKI	GCWGC	3 cut(s)	221, 264, 299
AspLEI	GCGC	3 cut(s)	60, 221, 383
AspS9I	GGNCC	2 cut(s)	237, 238
AsuC2I	CCSGG	2 cut(s)	346, 347
AsuHPI	GGTGA	1 cut(s)	218
AsuNHI	GCTAGC	1 cut(s)	461
AvaI	CYCGRG	1 cut(s)	345
BaeGI	GKGCMC	1 cut(s)	241
BanII	GRGCYC	1 cut(s)	241
BauI	CACGAG	1 cut(s)	64
BbsI	GAAGAC	1 cut(s)	150
BbvI	GCAGC	3 cut(s)	208, 251, 286
BccI	CCATC	1 cut(s)	399
BciT130I	CCWGG	4 cut(s)	12, 204, 402, 433
BcnI	CCSGG	2 cut(s)	346, 347
BcoDI	GTCTC	1 cut(s)	492
BfaI	CTAG	3 cut(s)	261, 462, 508
BfmI	CTRYAG	1 cut(s)	25
BfoI	RGCGCY	1 cut(s)	384
BfuAI	ACCTGC	1 cut(s)	18
BisI	GCNGC	5 cut(s)	222, 256, 265, 300, 319
BlsI	GCNGC	5 cut(s)	223, 257, 266, 301, 320
Bme1390I	CCNGG	6 cut(s)	12, 204, 346, 347, 402, 433
BmeT110I	CYCGRG	1 cut(s)	345
BmgT120I	GGNCC	2 cut(s)	237, 238
BmiI	GGNNCC	2 cut(s)	238, 239
BmrFI	CCNGG	6 cut(s)	12, 204, 346, 347, 402, 433
BmsI	GCATC	2 cut(s)	431, 473
BmtI	GCTAGC	1 cut(s)	465
BpiI	GAAGAC	1 cut(s)	150
BpmI	CTGGAG	2 cut(s)	114, 435
BpuMI	CCSGG	2 cut(s)	346, 347
BsaBI	GATNNNNATC	1 cut(s)	409
BsaJI	CCNNGG	2 cut(s)	345, 346
Bse118I	RCCGGY	1 cut(s)	224
Bse1I	ACTGG	4 cut(s)	117, 190, 215, 310
Bse3DI	GCAATG	1 cut(s)	493
Bse8I	GATNNNNATC	1 cut(s)	409
BseBI	CCWGG	4 cut(s)	12, 204, 402, 433
BseDI	CCNNGG	2 cut(s)	345, 346
BseGI	GGATG	4 cut(s)	199, 295, 410, 446
BseJI	GATNNNNATC	1 cut(s)	409
BseMI	GCAATG	1 cut(s)	493
BseNI	ACTGG	4 cut(s)	117, 190, 215, 310
BseRI	GAGGAG	6 cut(s)	111, 114, 117, 120, 162, 165
BseSI	GKGCMC	1 cut(s)	241
BseXI	GCAGC	3 cut(s)	208, 251, 286
Bsh1236I	CGCG	1 cut(s)	60
BshFI	GGCC	3 cut(s)	202, 239, 400
BsiHKCI	CYCGRG	1 cut(s)	345
BsiSI	CCGG	2 cut(s)	225, 346
BsmAI	GTCTC	1 cut(s)	492
BsnI	GGCC	3 cut(s)	202, 239, 400
BsoBI	CYCGRG	1 cut(s)	345
Bsp120I	GGGCCC	1 cut(s)	237
Bsp1286I	GDGCHC	1 cut(s)	241
BspACI	CCGC	4 cut(s)	256, 309, 318, 372
BspANI	GGCC	3 cut(s)	202, 239, 400
BspFNI	CGCG	1 cut(s)	60
BspLI	GGNNCC	2 cut(s)	238, 239
BspMAI	CTGCAG	1 cut(s)	29
BspMI	ACCTGC	1 cut(s)	18
BspOI	GCTAGC	1 cut(s)	465
BsrBI	CCGCTC	1 cut(s)	258
BsrDI	GCAATG	1 cut(s)	493
BsrFI	RCCGGY	1 cut(s)	224
BsrI	ACTGG	4 cut(s)	117, 190, 215, 310
BssAI	RCCGGY	1 cut(s)	224
BssECI	CCNNGG	2 cut(s)	345, 346
BssSI	CACGAG	1 cut(s)	64
Bst2BI	CACGAG	1 cut(s)	64
Bst2UI	CCWGG	4 cut(s)	12, 204, 402, 433
Bst4CI	ACNGT	1 cut(s)	233
BstAPI	GCANNNNNTGC	1 cut(s)	33
BstC8I	GCNNGC	5 cut(s)	38, 71, 226, 253, 463
BstF5I	GGATG	4 cut(s)	199, 295, 410, 446
BstFNI	CGCG	1 cut(s)	60
BstH2I	RGCGCY	1 cut(s)	384
BstHHI	GCGC	3 cut(s)	60, 221, 383
BstMAI	GTCTC	1 cut(s)	492
BstMWI	GCNNNNNNNGC	7 cut(s)	33, 66, 225, 261, 264, 315, 378
BstNI	CCWGG	4 cut(s)	12, 204, 402, 433
BstSCI	CCNGG	6 cut(s)	10, 202, 344, 345, 400, 431
BstSFI	CTRYAG	1 cut(s)	25
BstSLI	GKGCMC	1 cut(s)	241
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	3 cut(s)	208, 251, 286
BstV2I	GAAGAC	1 cut(s)	150
BstXI	CCANNNNNNTGG	2 cut(s)	18, 77
BsuRI	GGCC	3 cut(s)	202, 239, 400
BtgZI	GCGATG	1 cut(s)	88
BtsCI	GGATG	4 cut(s)	199, 295, 410, 446
BveI	ACCTGC	1 cut(s)	18
Cac8I	GCNNGC	5 cut(s)	38, 71, 226, 253, 463
CfoI	GCGC	3 cut(s)	60, 221, 383
Cfr10I	RCCGGY	1 cut(s)	224
Cfr13I	GGNCC	2 cut(s)	237, 238
Cfr9I	CCCGGG	1 cut(s)	345
CsiI	ACCWGGT	1 cut(s)	431
Csp6I	GTAC	2 cut(s)	214, 429
CviAII	CATG	1 cut(s)	33
CviJI	RGCY	9 cut(s)	125, 142, 189, 202, 239, 255, 264, 321, 400
CviKI_1	RGCY	9 cut(s)	125, 142, 189, 202, 239, 255, 264, 321, 400
CviQI	GTAC	2 cut(s)	214, 429
Eco147I	AGGCCT	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	241
Eco88I	CYCGRG	1 cut(s)	345
EcoO109I	RGGNCCY	1 cut(s)	237
EcoRII	CCWGG	4 cut(s)	10, 202, 400, 431
EcoT38I	GRGCYC	1 cut(s)	241
FaeI	CATG	1 cut(s)	36
FaiI	YATR	3 cut(s)	34, 453, 505
FatI	CATG	1 cut(s)	32
Fnu4HI	GCNGC	5 cut(s)	222, 256, 265, 300, 319
FokI	GGATG	4 cut(s)	206, 302, 417, 453
FriOI	GRGCYC	1 cut(s)	241
Fsp4HI	GCNGC	5 cut(s)	222, 256, 265, 300, 319
FspBI	CTAG	3 cut(s)	261, 462, 508
GlaI	GCGC	3 cut(s)	59, 220, 382
GluI	GCNGC	5 cut(s)	222, 256, 265, 300, 319
GsuI	CTGGAG	2 cut(s)	114, 435
HaeII	RGCGCY	1 cut(s)	384
HaeIII	GGCC	3 cut(s)	202, 239, 400
HapII	CCGG	2 cut(s)	225, 346
HhaI	GCGC	3 cut(s)	60, 221, 383
Hin1II	CATG	1 cut(s)	36
Hin6I	GCGC	3 cut(s)	58, 219, 381
HinP1I	GCGC	3 cut(s)	58, 219, 381
HinfI	GANTC	3 cut(s)	62, 326, 337
HpaII	CCGG	2 cut(s)	225, 346
HphI	GGTGA	1 cut(s)	218
Hpy188I	TCNGA	4 cut(s)	146, 193, 331, 440
Hpy188III	TCNNGA	3 cut(s)	52, 93, 414
HpyAV	CCTTC	1 cut(s)	132
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4V	TGCA	4 cut(s)	27, 179, 444, 486
HpyF10VI	GCNNNNNNNGC	7 cut(s)	33, 66, 225, 261, 264, 315, 378
Hsp92II	CATG	1 cut(s)	36
HspAI	GCGC	3 cut(s)	58, 219, 381
KroI	GCCGGC	1 cut(s)	224
KroNI	GCCGGC	1 cut(s)	226
LmnI	GCTCC	1 cut(s)	347
Lsp1109I	GCAGC	3 cut(s)	208, 251, 286
LweI	GCATC	2 cut(s)	431, 473
MabI	ACCWGGT	1 cut(s)	431
MaeI	CTAG	3 cut(s)	261, 462, 508
MaeIII	GTNAC	1 cut(s)	206
MbiI	CCGCTC	1 cut(s)	258
MboII	GAAGA	1 cut(s)	150
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	1 cut(s)	244
MlyI	GAGTC	3 cut(s)	56, 320, 331
MroNI	GCCGGC	1 cut(s)	224
MseI	TTAA	1 cut(s)	129
MspI	CCGG	2 cut(s)	225, 346
MspR9I	CCNGG	6 cut(s)	12, 204, 346, 347, 402, 433
MvaI	CCWGG	4 cut(s)	12, 204, 402, 433
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	7 cut(s)	33, 66, 225, 261, 264, 315, 378
NaeI	GCCGGC	1 cut(s)	226
NciI	CCSGG	2 cut(s)	346, 347
NgoMIV	GCCGGC	1 cut(s)	224
NheI	GCTAGC	1 cut(s)	461
NlaIII	CATG	1 cut(s)	36
NlaIV	GGNNCC	2 cut(s)	238, 239
NmuCI	GTSAC	1 cut(s)	206
PceI	AGGCCT	1 cut(s)	202
PcsI	WCGNNNNNNNCGW	1 cut(s)	444
PdiI	GCCGGC	1 cut(s)	226
PkrI	GCNGC	5 cut(s)	223, 257, 266, 301, 320
PleI	GAGTC	3 cut(s)	56, 320, 331
PpsI	GAGTC	3 cut(s)	56, 320, 331
Psp6I	CCWGG	4 cut(s)	10, 202, 400, 431
PspGI	CCWGG	4 cut(s)	10, 202, 400, 431
PspN4I	GGNNCC	2 cut(s)	238, 239
PspOMI	GGGCCC	1 cut(s)	237
PspPI	GGNCC	2 cut(s)	237, 238
PstI	CTGCAG	1 cut(s)	29
RsaI	GTAC	2 cut(s)	215, 430
RsaNI	GTAC	2 cut(s)	214, 429
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	5 cut(s)	222, 256, 265, 300, 319
Sau96I	GGNCC	2 cut(s)	237, 238
SchI	GAGTC	3 cut(s)	56, 320, 331
ScrFI	CCNGG	6 cut(s)	12, 204, 346, 347, 402, 433
SduI	GDGCHC	1 cut(s)	241
SetI	ASST	4 cut(s)	32, 45, 266, 437
SexAI	ACCWGGT	1 cut(s)	431
SfaNI	GCATC	2 cut(s)	431, 473
SfcI	CTRYAG	1 cut(s)	25
SmaI	CCCGGG	1 cut(s)	347
Sse9I	AATT	1 cut(s)	244
SseBI	AGGCCT	1 cut(s)	202
SsiI	CCGC	4 cut(s)	256, 309, 318, 372
SspMI	CTAG	3 cut(s)	261, 462, 508
StuI	AGGCCT	1 cut(s)	202
StyD4I	CCNGG	6 cut(s)	10, 202, 344, 345, 400, 431
TaaI	ACNGT	1 cut(s)	233
TasI	AATT	1 cut(s)	244
TauI	GCSGC	2 cut(s)	258, 321
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TseFI	GTSAC	1 cut(s)	206
TseI	GCWGC	3 cut(s)	221, 264, 299
Tsp45I	GTSAC	1 cut(s)	206
TspMI	CCCGGG	1 cut(s)	345
XmaI	CCCGGG	1 cut(s)	345
XspI	CTAG	3 cut(s)	261, 462, 508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.