Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Forward (+)

50748884 .. 50754576

Gene Structure 5693 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00430620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGATAATTCGTGGTAACAAGCATGAAGTGACGAATGCAATTGGGATGGAAATTGAGTGGTATCTTGGTAAAAGCCTGACCGACACAGAAAATGGTGACAGCTTCTTCAGCTTTTTTAAGACCCCTGTTGCCAACAGTACTGCTGAAGATGTCCAAACACTAATGGATCATGATTATTGCATTGGTTCAACAATTCGAGACAAAATCATTGAGAATAAGGATTTGGCGAAGGATTTGTTACAGGAGCTGCGGTTCTTTAGACATGGTAACTACACTGTATACAAGCATCGTCTGCTGAGATTACGGTATCTCGAGGTTGGAGCACAAGTGGAAGCAGCATACCTGAACCTTTACAAACCTATATACGAAAAGAGATATGAGATTGTTAATGGTATAACTAAAGTTGGAGAGAAAGATGAAGTTGCAAGGGACAAAGGAGATGAAGCCACCAAAGAGAAAGGAATCCCTCGATTTTGGCTTACTGCAATGAAGAATCATAAATTACTTGCTCAGGAGATCACAGAGCACGATGAAGAGGCGCTCAAGTATCTAAAAGATATCAAGTGGTATAGGATATATGGGGGAAGTTTCAGGCTGGAGTTTGTCTTTCAACAGCCTAATCCTTATTTTGAAAATGAAGTCCTCACCAAATCATATAAGCGGCCTCTGATGGAGAAAACAACTGGGTGTGTCATCAAATGGCATCATGGTAAAGACTTGACACATAAGTTTCTAGAGGGAATGTCGAAGAATTCCAAGCGCATGACCAAATCCTGTGAAAGCTTCTTTAACTTCTTCAACCCTCCTCAACTCTGTCTTCACGAGAAACATATTGATTATAATGATGGAAATCTAAATGAAGAAGTCAAAAGTAAACTGAATTATGATTTTTACATCGGTAAAATAATCCGCGACAAAATCATTCCTCATGCTATTTCATGGTTCACACGGGAGGCTCTTGAACCCGGAGGTGAGTTTGAAGATTTGCAAGATGATTGGTATGATTACTCAGATGATGATGAGGACGCGGAGGCCATCAAGAATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009292 GO:0009294 GO:0009987 GO:0016444 GO:0033554 GO:0034641 GO:0042393 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0046483 GO:0050896 GO:0051704 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

349

Amino Acids

41.13

Weight (kDa)

5.72

Isoelectric Point (pI)

27.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	26 - 70	7.3e-06	Nucleosome assembly protein (NAP)
NAP	PF00956	99 - 318	1.8e-60	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	840
AccI	GTMKAC	1 cut(s)	279
AccII	CGCG	2 cut(s)	912, 1028
AciI	CCGC	4 cut(s)	250, 661, 910, 1028
AclWI	GGATC	1 cut(s)	174
AcsI	RAATTY	2 cut(s)	751, 1042
AcuI	CTGAAG	2 cut(s)	91, 165
AfaI	GTAC	1 cut(s)	139
AgsI	TTSAA	6 cut(s)	189, 611, 632, 799, 962, 980
AjuI	GAANNNNNNNTTGG	2 cut(s)	206, 238
AloI	GAACNNNNNNTCC	2 cut(s)	236, 268
AluBI	AGCT	4 cut(s)	102, 111, 247, 783
AluI	AGCT	4 cut(s)	102, 111, 247, 783
Alw21I	GWGCWC	2 cut(s)	325, 528
Alw26I	GTCTC	1 cut(s)	192
AlwI	GGATC	1 cut(s)	174
AlwNI	CAGNNNCTG	1 cut(s)	247
Ama87I	CYCGRG	1 cut(s)	311
AoxI	GGCC	2 cut(s)	662, 1032
ApeKI	GCWGC	2 cut(s)	247, 335
ApoI	RAATTY	2 cut(s)	751, 1042
AspLEI	GCGC	2 cut(s)	541, 762
AsuC2I	CCSGG	1 cut(s)	966
AsuHPI	GGTGA	3 cut(s)	107, 637, 983
AvaI	CYCGRG	1 cut(s)	311
BauI	CACGAG	1 cut(s)	821
BbsI	GAAGAC	1 cut(s)	809
Bbv12I	GWGCWC	2 cut(s)	325, 528
BbvI	GCAGC	2 cut(s)	234, 347
BccI	CCATC	4 cut(s)	40, 664, 839, 1043
BcnI	CCSGG	1 cut(s)	966
BcoDI	GTCTC	1 cut(s)	192
BfaI	CTAG	1 cut(s)	734
BfoI	RGCGCY	1 cut(s)	542
BisI	GCNGC	3 cut(s)	248, 336, 662
BlsI	GCNGC	3 cut(s)	249, 337, 663
BmcAI	AGTACT	1 cut(s)	139
Bme1390I	CCNGG	1 cut(s)	966
BmeT110I	CYCGRG	1 cut(s)	311
BmrFI	CCNGG	1 cut(s)	966
BmrI	ACTGGG	1 cut(s)	693
BmsI	GCATC	2 cut(s)	295, 712
BmuI	ACTGGG	1 cut(s)	693
BpiI	GAAGAC	1 cut(s)	809
BpmI	CTGGAG	1 cut(s)	617
Bpu10I	CCTNAGC	1 cut(s)	510
BpuEI	CTTGAG	1 cut(s)	527
BpuMI	CCSGG	1 cut(s)	966
BsaBI	GATNNNNATC	1 cut(s)	849
BsaXI	ACNNNNNCTCC	4 cut(s)	236, 266, 312, 342
Bse1I	ACTGG	1 cut(s)	688
Bse3DI	GCAATG	1 cut(s)	492
Bse8I	GATNNNNATC	1 cut(s)	849
BseGI	GGATG	1 cut(s)	51
BseJI	GATNNNNATC	1 cut(s)	849
BseMI	GCAATG	1 cut(s)	492
BseMII	CTCAG	3 cut(s)	287, 524, 1023
BseNI	ACTGG	1 cut(s)	688
BseRI	GAGGAG	1 cut(s)	795
BseXI	GCAGC	2 cut(s)	234, 347
Bsh1236I	CGCG	2 cut(s)	912, 1028
BshFI	GGCC	2 cut(s)	664, 1034
BsiHKAI	GWGCWC	2 cut(s)	325, 528
BsiHKCI	CYCGRG	1 cut(s)	311
BsiSI	CCGG	1 cut(s)	966
BslFI	GGGAC	1 cut(s)	443
BsmAI	GTCTC	1 cut(s)	192
BsmFI	GGGAC	1 cut(s)	443
BsmI	GAATGC	1 cut(s)	40
BsnI	GGCC	2 cut(s)	664, 1034
BsoBI	CYCGRG	1 cut(s)	311
Bsp1286I	GDGCHC	2 cut(s)	325, 528
Bsp143I	GATC	2 cut(s)	166, 516
BspACI	CCGC	4 cut(s)	250, 661, 910, 1028
BspANI	GGCC	2 cut(s)	664, 1034
BspCNI	CTCAG	3 cut(s)	288, 523, 1022
BspFNI	CGCG	2 cut(s)	912, 1028
BspHI	TCATGA	1 cut(s)	169
BspPI	GGATC	1 cut(s)	174
BsrDI	GCAATG	1 cut(s)	492
BsrI	ACTGG	1 cut(s)	688
BssMI	GATC	2 cut(s)	166, 516
BssNAI	GTATAC	1 cut(s)	280
BssSI	CACGAG	1 cut(s)	821
Bst1107I	GTATAC	1 cut(s)	280
Bst2BI	CACGAG	1 cut(s)	821
Bst4CI	ACNGT	3 cut(s)	137, 277, 306
Bst6I	CTCTTC	1 cut(s)	528
BstAPI	GCANNNNNTGC	1 cut(s)	292
BstDEI	CTNAG	3 cut(s)	296, 510, 1009
BstF5I	GGATG	1 cut(s)	51
BstFNI	CGCG	2 cut(s)	912, 1028
BstH2I	RGCGCY	1 cut(s)	542
BstHHI	GCGC	2 cut(s)	541, 762
BstKTI	GATC	2 cut(s)	169, 519
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	2 cut(s)	166, 516
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 292
BstSCI	CCNGG	1 cut(s)	964
BstUI	CGCG	2 cut(s)	912, 1028
BstV1I	GCAGC	2 cut(s)	234, 347
BstV2I	GAAGAC	1 cut(s)	809
BstZ17I	GTATAC	1 cut(s)	280
BsuRI	GGCC	2 cut(s)	664, 1034
BtsCI	GGATG	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	273
CaiI	CAGNNNCTG	1 cut(s)	247
CciI	TCATGA	1 cut(s)	169
CfoI	GCGC	2 cut(s)	541, 762
CseI	GACGC	1 cut(s)	1034
Csp6I	GTAC	1 cut(s)	138
CviAII	CATG	7 cut(s)	23, 170, 263, 707, 763, 929, 939
CviQI	GTAC	1 cut(s)	138
DdeI	CTNAG	3 cut(s)	296, 510, 1009
DpnI	GATC	2 cut(s)	168, 518
DpnII	GATC	2 cut(s)	166, 516
Eam1104I	CTCTTC	1 cut(s)	528
EarI	CTCTTC	1 cut(s)	528
Eco32I	GATATC	1 cut(s)	559
Eco57I	CTGAAG	2 cut(s)	91, 165
Eco88I	CYCGRG	1 cut(s)	311
EcoRI	GAATTC	1 cut(s)	751
EcoRV	GATATC	1 cut(s)	559
FaeI	CATG	7 cut(s)	26, 173, 266, 710, 766, 932, 942
FaqI	GGGAC	1 cut(s)	443
FatI	CATG	7 cut(s)	22, 169, 262, 706, 762, 928, 938
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	3 cut(s)	248, 336, 662
FokI	GGATG	1 cut(s)	58
Fsp4HI	GCNGC	3 cut(s)	248, 336, 662
FspBI	CTAG	1 cut(s)	734
GlaI	GCGC	2 cut(s)	540, 761
GluI	GCNGC	3 cut(s)	248, 336, 662
GsuI	CTGGAG	1 cut(s)	617
HaeII	RGCGCY	1 cut(s)	542
HaeIII	GGCC	2 cut(s)	664, 1034
HapII	CCGG	1 cut(s)	966
HgaI	GACGC	1 cut(s)	1034
HhaI	GCGC	2 cut(s)	541, 762
Hin1II	CATG	7 cut(s)	26, 173, 266, 710, 766, 932, 942
Hin6I	GCGC	2 cut(s)	539, 760
HinP1I	GCGC	2 cut(s)	539, 760
HindIII	AAGCTT	1 cut(s)	781
HinfI	GANTC	2 cut(s)	462, 493
HpaII	CCGG	1 cut(s)	966
HphI	GGTGA	3 cut(s)	107, 637, 983
Hpy166II	GTNNAC	3 cut(s)	280, 875, 945
Hpy188I	TCNGA	2 cut(s)	669, 1012
Hpy188III	TCNNGA	8 cut(s)	170, 197, 311, 512, 734, 821, 959, 1039
Hpy8I	GTNNAC	3 cut(s)	280, 875, 945
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	3 cut(s)	137, 277, 306
HpyCH4V	TGCA	5 cut(s)	38, 180, 425, 485, 988
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 292
HpyF3I	CTNAG	3 cut(s)	296, 510, 1009
Hsp92II	CATG	7 cut(s)	26, 173, 266, 710, 766, 932, 942
HspAI	GCGC	2 cut(s)	539, 760
Kzo9I	GATC	2 cut(s)	166, 516
LmnI	GCTCC	2 cut(s)	244, 320
Lsp1109I	GCAGC	2 cut(s)	234, 347
LweI	GCATC	2 cut(s)	295, 712
MaeI	CTAG	1 cut(s)	734
MaeIII	GTNAC	5 cut(s)	14, 28, 95, 237, 266
MalI	GATC	2 cut(s)	168, 518
MboI	GATC	2 cut(s)	166, 516
MboII	GAAGA	9 cut(s)	97, 158, 502, 545, 760, 787, 809, 872, 992
MfeI	CAATTG	1 cut(s)	39
MhlI	GDGCHC	2 cut(s)	325, 528
MluCI	AATT	8 cut(s)	6, 39, 51, 192, 500, 751, 880, 1042
MmeI	TCCRAC	2 cut(s)	298, 385
MseI	TTAA	3 cut(s)	117, 387, 789
MspI	CCGG	1 cut(s)	966
MspR9I	CCNGG	1 cut(s)	966
MunI	CAATTG	1 cut(s)	39
Mva1269I	GAATGC	1 cut(s)	40
MvnI	CGCG	2 cut(s)	912, 1028
MwoI	GCNNNNNNNGC	2 cut(s)	108, 292
NciI	CCSGG	1 cut(s)	966
NdeII	GATC	2 cut(s)	166, 516
NlaIII	CATG	7 cut(s)	26, 173, 266, 710, 766, 932, 942
NmuCI	GTSAC	2 cut(s)	28, 95
PaeR7I	CTCGAG	1 cut(s)	311
PagI	TCATGA	1 cut(s)	169
PctI	GAATGC	1 cut(s)	40
PfeI	GAWTC	2 cut(s)	462, 493
PkrI	GCNGC	3 cut(s)	249, 337, 663
PsiI	TTATAA	1 cut(s)	840
PstNI	CAGNNNCTG	1 cut(s)	247
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
SaqAI	TTAA	3 cut(s)	117, 387, 789
SatI	GCNGC	3 cut(s)	248, 336, 662
Sau3AI	GATC	2 cut(s)	166, 516
ScaI	AGTACT	1 cut(s)	139
ScrFI	CCNGG	1 cut(s)	966
SduI	GDGCHC	2 cut(s)	325, 528
SetI	ASST	9 cut(s)	104, 113, 249, 318, 345, 351, 361, 785, 973
SfaNI	GCATC	2 cut(s)	295, 712
Sfr274I	CTCGAG	1 cut(s)	311
SlaI	CTCGAG	1 cut(s)	311
SmlI	CTYRAG	2 cut(s)	311, 542
SmoI	CTYRAG	2 cut(s)	311, 542
Sse9I	AATT	8 cut(s)	6, 39, 51, 192, 500, 751, 880, 1042
SsiI	CCGC	4 cut(s)	250, 661, 910, 1028
SspMI	CTAG	1 cut(s)	734
StyD4I	CCNGG	1 cut(s)	964
TaaI	ACNGT	3 cut(s)	137, 277, 306
TaqI	TCGA	4 cut(s)	196, 312, 469, 746
TaqII	GACCGA	1 cut(s)	95
TasI	AATT	8 cut(s)	6, 39, 51, 192, 500, 751, 880, 1042
TatI	WGTACW	1 cut(s)	137
TauI	GCSGC	1 cut(s)	664
TfiI	GAWTC	2 cut(s)	462, 493
Tru1I	TTAA	3 cut(s)	117, 387, 789
Tru9I	TTAA	3 cut(s)	117, 387, 789
TscAI	CASTG	1 cut(s)	280
TseFI	GTSAC	2 cut(s)	28, 95
TseI	GCWGC	2 cut(s)	247, 335
Tsp45I	GTSAC	2 cut(s)	28, 95
TspDTI	ATGAA	8 cut(s)	39, 432, 456, 503, 546, 651, 873, 927
TspRI	CASTG	1 cut(s)	280
XapI	RAATTY	2 cut(s)	751, 1042
XbaI	TCTAGA	1 cut(s)	733
XhoI	CTCGAG	1 cut(s)	311
XmiI	GTMKAC	1 cut(s)	279
XspI	CTAG	1 cut(s)	734
ZrmI	AGTACT	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.