Rmu_co8360287.1_g000001

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8360287.1
OG0000381
Physical Location & Seq
Forward (+)
360 .. 1078
719 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8360287.1_g000001.1.cds

Sequence Viewer

Length: 719 bp
atgagcaaagacatggataacatcaatttagctggccagcataccagggacatccttgagagcctacctcagaatgtcagaaaacgggttgaggccattagagaaattgagaaccaacatcatgaattagaggcagagtttctcaaggagagagctttacttgaagctaagtatcataaattatatcaacctttctacagcaagcgatacttgattgtgaatggtgttgttgaaactgaagaagttgccactgaagcagcagcagatcaagaggacaaaactgcaaaagagggaggagtgcctgatttctggctcaatgcattgaagaacaatgaattgctagccaaggagatcactgagcatgatgaaggagctcttaaatatctgagagacatcaagtggtttaagatgcataattccaaggggttcaaacttcagttctactttgacaccaatccatttttcaaaaactctgttttgacaaagacatatcacatgattgatgaagatgaaccaaataacgtagcagggacggagattgaatggtatccagcaaaatgcctgacacagaagattcttaagaagaagcgtaagaagggatcgaagaattctaagcctctgactaaaactgaaaattgtaaaagtttcttcaatttctttagtccacctcaagtctccaaggacgatgaaattattgatgaatttgctgccgaggaact

Protein Analysis

240

Amino Acids

28.03

Weight (kDa)

5.89

Isoelectric Point (pI)

46.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000381)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 607
AcoI YGGCCR 1 cut(s) 34
AcsI RAATTY 2 cut(s) 607, 701
AcuI CTGAAG 3 cut(s) 258, 273, 419
AflII CTTAAG 1 cut(s) 578
AgsI TTSAA 7 cut(s) 164, 233, 325, 430, 466, 542, 652
AjnI CCWGG 1 cut(s) 44
AjuI GAANNNNNNNTTGG 2 cut(s) 446, 478
AluBI AGCT 4 cut(s) 32, 155, 167, 374
AluI AGCT 4 cut(s) 32, 155, 167, 374
Alw21I GWGCWC 1 cut(s) 376
Alw26I GTCTC 2 cut(s) 384, 679
AlwI GGATC 1 cut(s) 607
AoxI GGCC 2 cut(s) 34, 93
ApeKI GCWGC 3 cut(s) 257, 260, 707
ApoI RAATTY 2 cut(s) 607, 701
AsuNHI GCTAGC 1 cut(s) 340
BalI TGGCCA 1 cut(s) 36
BanII GRGCYC 1 cut(s) 376
Bbv12I GWGCWC 1 cut(s) 376
BbvI GCAGC 3 cut(s) 269, 272, 694
BciT130I CCWGG 1 cut(s) 46
BciVI GTATCC 1 cut(s) 558
BcoDI GTCTC 2 cut(s) 384, 679
BfaI CTAG 1 cut(s) 341
BfmI CTRYAG 1 cut(s) 196
BfrI CTTAAG 1 cut(s) 578
BfuI GTATCC 1 cut(s) 558
BisI GCNGC 3 cut(s) 258, 261, 708
BlsI GCNGC 3 cut(s) 259, 262, 709
Bme1390I CCNGG 1 cut(s) 46
BmrFI CCNGG 1 cut(s) 46
BmsI GCATC 1 cut(s) 399
BmtI GCTAGC 1 cut(s) 344
BplI GAGNNNNNCTC 2 cut(s) 52, 84
BpuEI CTTGAG 3 cut(s) 77, 128, 654
BsaJI CCNNGG 5 cut(s) 45, 345, 420, 678, 711
BseBI CCWGG 1 cut(s) 46
BseDI CCNNGG 5 cut(s) 45, 345, 420, 678, 711
BseGI GGATG 1 cut(s) 51
BseMII CTCAG 3 cut(s) 83, 348, 377
BseRI GAGGAG 1 cut(s) 309
BseXI GCAGC 3 cut(s) 269, 272, 694
BshFI GGCC 2 cut(s) 36, 95
BsiHKAI GWGCWC 1 cut(s) 376
BslFI GGGAC 2 cut(s) 62, 544
BsmAI GTCTC 2 cut(s) 384, 679
BsmFI GGGAC 2 cut(s) 62, 544
BsnI GGCC 2 cut(s) 36, 95
Bsp1286I GDGCHC 1 cut(s) 376
Bsp143I GATC 3 cut(s) 265, 351, 599
BspANI GGCC 2 cut(s) 36, 95
BspCNI CTCAG 3 cut(s) 82, 349, 378
BspHI TCATGA 1 cut(s) 121
BspOI GCTAGC 1 cut(s) 344
BspPI GGATC 1 cut(s) 607
BspTI CTTAAG 1 cut(s) 578
BssECI CCNNGG 5 cut(s) 45, 345, 420, 678, 711
BssMI GATC 3 cut(s) 265, 351, 599
BssT1I CCWWGG 3 cut(s) 345, 420, 678
Bst2UI CCWGG 1 cut(s) 46
BstAFI CTTAAG 1 cut(s) 578
BstC8I GCNNGC 4 cut(s) 34, 38, 203, 342
BstDEI CTNAG 5 cut(s) 69, 168, 357, 386, 612
BstF5I GGATG 1 cut(s) 51
BstKTI GATC 3 cut(s) 268, 354, 602
BstMAI GTCTC 2 cut(s) 384, 679
BstMBI GATC 3 cut(s) 265, 351, 599
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstNI CCWGG 1 cut(s) 46
BstSCI CCNGG 1 cut(s) 44
BstSFI CTRYAG 1 cut(s) 196
BstV1I GCAGC 3 cut(s) 269, 272, 694
BsuI GTATCC 1 cut(s) 558
BsuRI GGCC 2 cut(s) 36, 95
BtsCI GGATG 1 cut(s) 51
BtsIMutI CAGTG 2 cut(s) 249, 354
Cac8I GCNNGC 4 cut(s) 34, 38, 203, 342
CciI TCATGA 1 cut(s) 121
CviAII CATG 4 cut(s) 13, 122, 362, 496
DdeI CTNAG 5 cut(s) 69, 168, 357, 386, 612
DpnI GATC 3 cut(s) 267, 353, 601
DpnII GATC 3 cut(s) 265, 351, 599
EaeI YGGCCR 1 cut(s) 34
Ecl136II GAGCTC 1 cut(s) 374
Eco130I CCWWGG 3 cut(s) 345, 420, 678
Eco24I GRGCYC 1 cut(s) 376
Eco53kI GAGCTC 1 cut(s) 374
Eco57I CTGAAG 3 cut(s) 258, 273, 419
EcoICRI GAGCTC 1 cut(s) 374
EcoRI GAATTC 1 cut(s) 607
EcoRII CCWGG 1 cut(s) 44
EcoT14I CCWWGG 3 cut(s) 345, 420, 678
EcoT22I ATGCAT 2 cut(s) 322, 414
EcoT38I GRGCYC 1 cut(s) 376
ErhI CCWWGG 3 cut(s) 345, 420, 678
FaeI CATG 4 cut(s) 16, 125, 365, 499
FaiI YATR 9 cut(s) 14, 42, 123, 177, 184, 363, 414, 490, 497
FalI AAGNNNNNCTT 4 cut(s) 194, 226, 360, 392
FaqI GGGAC 2 cut(s) 62, 544
FatI CATG 4 cut(s) 12, 121, 361, 495
Fnu4HI GCNGC 3 cut(s) 258, 261, 708
FokI GGATG 1 cut(s) 38
FriOI GRGCYC 1 cut(s) 376
Fsp4HI GCNGC 3 cut(s) 258, 261, 708
FspBI CTAG 1 cut(s) 341
GluI GCNGC 3 cut(s) 258, 261, 708
HaeIII GGCC 2 cut(s) 36, 95
Hin1II CATG 4 cut(s) 16, 125, 365, 499
HinfI GANTC 1 cut(s) 574
Hpy166II GTNNAC 1 cut(s) 665
Hpy188I TCNGA 4 cut(s) 72, 80, 387, 621
Hpy188III TCNNGA 2 cut(s) 122, 269
Hpy8I GTNNAC 1 cut(s) 665
HpyAV CCTTC 2 cut(s) 362, 589
HpyCH4IV ACGT 1 cut(s) 522
HpyCH4V TGCA 3 cut(s) 284, 320, 412
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 5 cut(s) 69, 168, 357, 386, 612
HpySE526I ACGT 1 cut(s) 522
Hsp92II CATG 4 cut(s) 16, 125, 365, 499
Kzo9I GATC 3 cut(s) 265, 351, 599
LmnI GCTCC 1 cut(s) 371
LpnPI CCDG 9 cut(s) 18, 31, 50, 58, 295, 315, 513, 564, 575
Lsp1109I GCAGC 3 cut(s) 269, 272, 694
LweI GCATC 1 cut(s) 399
MaeI CTAG 1 cut(s) 341
MaeII ACGT 1 cut(s) 522
MalI GATC 3 cut(s) 267, 353, 601
MboI GATC 3 cut(s) 265, 351, 599
MboII GAAGA 7 cut(s) 251, 337, 518, 583, 595, 616, 640
MhlI GDGCHC 1 cut(s) 376
MlsI TGGCCA 1 cut(s) 36
MluNI TGGCCA 1 cut(s) 36
MnlI CCTC 9 cut(s) 78, 85, 124, 265, 283, 287, 627, 678, 706
Mox20I TGGCCA 1 cut(s) 36
Mph1103I ATGCAT 2 cut(s) 322, 414
MscI TGGCCA 1 cut(s) 36
MseI TTAA 3 cut(s) 378, 405, 579
Msp20I TGGCCA 1 cut(s) 36
MspCI CTTAAG 1 cut(s) 578
MspR9I CCNGG 1 cut(s) 46
MvaI CCWGG 1 cut(s) 46
MwoI GCNNNNNNNGC 1 cut(s) 254
NdeII GATC 3 cut(s) 265, 351, 599
NheI GCTAGC 1 cut(s) 340
NlaIII CATG 4 cut(s) 16, 125, 365, 499
NsiI ATGCAT 2 cut(s) 322, 414
PagI TCATGA 1 cut(s) 121
PfeI GAWTC 1 cut(s) 574
PkrI GCNGC 3 cut(s) 259, 262, 709
Psp124BI GAGCTC 1 cut(s) 376
Psp6I CCWGG 1 cut(s) 44
PspGI CCWGG 1 cut(s) 44
SacI GAGCTC 1 cut(s) 376
SaqAI TTAA 3 cut(s) 378, 405, 579
SatI GCNGC 3 cut(s) 258, 261, 708
Sau3AI GATC 3 cut(s) 265, 351, 599
ScrFI CCNGG 1 cut(s) 46
SduI GDGCHC 1 cut(s) 376
SetI ASST 8 cut(s) 34, 70, 157, 169, 193, 376, 525, 670
SfaNI GCATC 1 cut(s) 399
SfcI CTRYAG 1 cut(s) 196
SmlI CTYRAG 4 cut(s) 56, 143, 578, 669
SmoI CTYRAG 4 cut(s) 56, 143, 578, 669
SspMI CTAG 1 cut(s) 341
SstI GAGCTC 1 cut(s) 376
StyD4I CCNGG 1 cut(s) 44
StyI CCWWGG 3 cut(s) 345, 420, 678
TaiI ACGT 1 cut(s) 525
TaqI TCGA 1 cut(s) 602
TfiI GAWTC 1 cut(s) 574
Tru1I TTAA 3 cut(s) 378, 405, 579
Tru9I TTAA 3 cut(s) 378, 405, 579
TscAI CASTG 2 cut(s) 256, 361
TseI GCWGC 3 cut(s) 257, 260, 707
TspDTI ATGAA 7 cut(s) 138, 348, 381, 519, 525, 702, 714
TspGWI ACGGA 1 cut(s) 548
TspRI CASTG 2 cut(s) 256, 361
Vha464I CTTAAG 1 cut(s) 578
XapI RAATTY 2 cut(s) 607, 701
XspI CTAG 1 cut(s) 341
Zsp2I ATGCAT 2 cut(s) 322, 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.