Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Reverse (-)

57617071 .. 57620932

Gene Structure 3862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG421500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGAGTAGCAACAAAGATAACTTCGACATGTCCGACCTCGGCGCCTCCCTTCCGGCCGCCGCCGCCGCTCTTAGTGCAGAGGATCGCGCTGGTCTTGTTAATGCTCTCAAGGACAAGCTTCAGAGCTTGGCCGGACAGCATTCCGACATATTAGAAACTTTGTCACCAACGGTCAGGAAACGTGTTGATGTATTGAGAGAGATGCAGAGCCAACATGATGAGTTGGAAAAGAAGTTTTTTGAAGAAAGGGCTGCATTGGAAGCAAAATACCAGAAGCTTTATGAACCTCTCTACACAAAGAGATACGAAATTGTCAACGGTGTAACCGAAGTTGAAGGAGTGAAAAATGAATCTGCAGTGGACCAAGGAGATGATGCCACTGAAGAGAAAGGAGTGCCTGACTTCTGGCTTACGGCAATGAAGACCAATGAAGTTCTTTCTGAGGAGATTTCAGAGCGTGATGAAGGGGCTCTGAAGTACCTCAAGGATATCAAGTGGTATAGGATAGATGAACCGAAAGGATTCAAGCTTGAGTTTTTCTTCAATGCCAATCCTTATTTCAAAAATTCTGTCCTGACAAAAACGTATCACATGATTGATGACGATGAACCTATTTTGGAGAAGGCAATTGGGACGGAGATTGAATGGTATCCTGGGAAAAGCTTGACACAGAAGATCTTGAAGAAGAAGCCAAGAAAGGGATCAAAAAATTCTAAACCTATAACCAAAACTGAAGATTGTGAAAGCTTCTTTAACTTCTTCAACCCTCCTGAGATCCCTGATACTGATGATGGATTTGATGAGGAAACTGCTGAAGAACTTCAAGGTCAGATGGAGCAGGATTATGACATTGGGTACGTTGGCGATTTCTTTTACTTTTGTCTAATGAATATACTCTGTTTGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

302

Amino Acids

34.58

Weight (kDa)

4.63

Isoelectric Point (pI)

40.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	60 - 286	2.6e-76	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	41
AccBSI	CCGCTC	1 cut(s)	68
AccII	CGCG	1 cut(s)	87
AciI	CCGC	4 cut(s)	57, 60, 63, 66
AclWI	GGATC	3 cut(s)	90, 709, 769
AcoI	YGGCCR	2 cut(s)	54, 129
AcsI	RAATTY	2 cut(s)	565, 709
AcuI	CTGAAG	5 cut(s)	104, 402, 494, 753, 834
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	2 cut(s)	479, 857
AfiI	CCNNNNNNNGG	1 cut(s)	698
AflIII	ACRYGT	2 cut(s)	27, 181
AgsI	TTSAA	9 cut(s)	242, 335, 526, 544, 562, 644, 682, 763, 824
AjnI	CCWGG	1 cut(s)	652
AjuI	GAANNNNNNNTTGG	2 cut(s)	542, 574
AluBI	AGCT	6 cut(s)	118, 126, 277, 529, 663, 747
AluI	AGCT	6 cut(s)	118, 126, 277, 529, 663, 747
AlwI	GGATC	3 cut(s)	90, 709, 769
AoxI	GGCC	2 cut(s)	54, 129
ApeKI	GCWGC	1 cut(s)	251
ApoI	RAATTY	2 cut(s)	565, 709
ArsI	GACNNNNNNTTYG	2 cut(s)	555, 587
Asp700I	GAANNNNTTC	2 cut(s)	521, 819
AspLEI	GCGC	2 cut(s)	44, 89
AspS9I	GGNCC	1 cut(s)	361
AsuHPI	GGTGA	1 cut(s)	156
AvaII	GGWCC	1 cut(s)	361
BanI	GGYRCC	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	472
BbsI	GAAGAC	1 cut(s)	428
BbvI	GCAGC	1 cut(s)	238
BccI	CCATC	2 cut(s)	785, 826
BceAI	ACGGC	1 cut(s)	429
BciT130I	CCWGG	1 cut(s)	654
BciVI	GTATCC	1 cut(s)	660
BfmI	CTRYAG	1 cut(s)	354
BfoI	RGCGCY	1 cut(s)	45
BfuI	GTATCC	1 cut(s)	660
BglII	AGATCT	1 cut(s)	675
BisI	GCNGC	5 cut(s)	57, 60, 63, 66, 252
BlsI	GCNGC	5 cut(s)	58, 61, 64, 67, 253
Bme1390I	CCNGG	1 cut(s)	654
Bme18I	GGWCC	1 cut(s)	361
BmgT120I	GGNCC	1 cut(s)	361
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	654
BmsI	GCATC	2 cut(s)	192, 364
BpiI	GAAGAC	1 cut(s)	428
BpuEI	CTTGAG	3 cut(s)	92, 467, 551
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	3 cut(s)	37, 364, 653
Bsc4I	CCNNNNNNNGG	1 cut(s)	698
Bse3DI	GCAATG	1 cut(s)	423
BseBI	CCWGG	1 cut(s)	654
BseDI	CCNNGG	3 cut(s)	37, 364, 653
BseLI	CCNNNNNNNGG	1 cut(s)	698
BseMI	GCAATG	1 cut(s)	423
BseMII	CTCAG	2 cut(s)	432, 762
BseRI	GAGGAG	1 cut(s)	458
BseX3I	CGGCCG	1 cut(s)	54
BseXI	GCAGC	1 cut(s)	238
BsgI	GTGCAG	1 cut(s)	96
Bsh1236I	CGCG	1 cut(s)	87
Bsh1285I	CGRYCG	1 cut(s)	57
BshFI	GGCC	2 cut(s)	56, 131
BshNI	GGYRCC	1 cut(s)	41
BsiEI	CGRYCG	1 cut(s)	57
BsiSI	CCGG	2 cut(s)	53, 132
BslFI	GGGAC	1 cut(s)	646
BslI	CCNNNNNNNGG	1 cut(s)	698
BsmFI	GGGAC	1 cut(s)	646
BsmI	GAATGC	1 cut(s)	139
BsnI	GGCC	2 cut(s)	56, 131
Bsp1286I	GDGCHC	1 cut(s)	472
Bsp143I	GATC	4 cut(s)	82, 675, 701, 774
BspACI	CCGC	4 cut(s)	57, 60, 63, 66
BspANI	GGCC	2 cut(s)	56, 131
BspCNI	CTCAG	2 cut(s)	433, 763
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	1 cut(s)	43
BspMAI	CTGCAG	1 cut(s)	358
BspPI	GGATC	3 cut(s)	90, 709, 769
BspT107I	GGYRCC	1 cut(s)	41
BsrBI	CCGCTC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	423
BssECI	CCNNGG	3 cut(s)	37, 364, 653
BssMI	GATC	4 cut(s)	82, 675, 701, 774
BssNI	GRCGYC	1 cut(s)	42
BssT1I	CCWWGG	1 cut(s)	364
Bst2UI	CCWGG	1 cut(s)	654
Bst4CI	ACNGT	2 cut(s)	172, 320
Bst6I	CTCTTC	1 cut(s)	378
BstACI	GRCGYC	1 cut(s)	42
BstDEI	CTNAG	3 cut(s)	71, 441, 771
BstFNI	CGCG	1 cut(s)	87
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	2 cut(s)	44, 89
BstKTI	GATC	4 cut(s)	85, 678, 704, 777
BstMBI	GATC	4 cut(s)	82, 675, 701, 774
BstMCI	CGRYCG	1 cut(s)	57
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 65, 74, 260
BstNI	CCWGG	1 cut(s)	654
BstNSI	RCATGY	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	652
BstSFI	CTRYAG	1 cut(s)	354
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	1 cut(s)	238
BstV2I	GAAGAC	1 cut(s)	428
BstX2I	RGATCY	2 cut(s)	675, 774
BstYI	RGATCY	2 cut(s)	675, 774
BstZI	CGGCCG	1 cut(s)	54
BsuI	GTATCC	1 cut(s)	660
BsuRI	GGCC	2 cut(s)	56, 131
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	2 cut(s)	363, 378
CfoI	GCGC	2 cut(s)	44, 89
Cfr13I	GGNCC	1 cut(s)	361
Csp6I	GTAC	2 cut(s)	478, 856
CviAII	CATG	3 cut(s)	28, 215, 592
CviQI	GTAC	2 cut(s)	478, 856
DdeI	CTNAG	3 cut(s)	71, 441, 771
DinI	GGCGCC	1 cut(s)	43
DpnI	GATC	4 cut(s)	84, 677, 703, 776
DpnII	GATC	4 cut(s)	82, 675, 701, 774
EaeI	YGGCCR	2 cut(s)	54, 129
EagI	CGGCCG	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
EclXI	CGGCCG	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	364
Eco24I	GRGCYC	1 cut(s)	472
Eco32I	GATATC	1 cut(s)	490
Eco47I	GGWCC	1 cut(s)	361
Eco52I	CGGCCG	1 cut(s)	54
Eco57I	CTGAAG	5 cut(s)	104, 402, 494, 753, 834
EcoRII	CCWGG	1 cut(s)	652
EcoRV	GATATC	1 cut(s)	490
EcoT14I	CCWWGG	1 cut(s)	364
EcoT38I	GRGCYC	1 cut(s)	472
EgeI	GGCGCC	1 cut(s)	43
EheI	GGCGCC	1 cut(s)	43
ErhI	CCWWGG	1 cut(s)	364
FaeI	CATG	3 cut(s)	31, 218, 595
FaiI	YATR	9 cut(s)	29, 149, 216, 282, 501, 593, 722, 846, 893
FaqI	GGGAC	1 cut(s)	646
FatI	CATG	3 cut(s)	27, 214, 591
Fnu4HI	GCNGC	5 cut(s)	57, 60, 63, 66, 252
FriOI	GRGCYC	1 cut(s)	472
Fsp4HI	GCNGC	5 cut(s)	57, 60, 63, 66, 252
GlaI	GCGC	2 cut(s)	43, 88
GluI	GCNGC	5 cut(s)	57, 60, 63, 66, 252
HaeII	RGCGCY	1 cut(s)	45
HaeIII	GGCC	2 cut(s)	56, 131
HapII	CCGG	2 cut(s)	53, 132
HhaI	GCGC	2 cut(s)	44, 89
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	3 cut(s)	31, 218, 595
Hin6I	GCGC	2 cut(s)	42, 87
HinP1I	GCGC	2 cut(s)	42, 87
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HindIII	AAGCTT	5 cut(s)	116, 275, 527, 661, 745
HinfI	GANTC	2 cut(s)	350, 522
HpaII	CCGG	2 cut(s)	53, 132
HphI	GGTGA	1 cut(s)	156
Hpy166II	GTNNAC	2 cut(s)	316, 361
Hpy188I	TCNGA	7 cut(s)	34, 123, 145, 442, 454, 474, 831
Hpy188III	TCNNGA	4 cut(s)	175, 574, 679, 770
Hpy8I	GTNNAC	2 cut(s)	316, 361
HpyAV	CCTTC	4 cut(s)	59, 329, 458, 616
HpyCH4III	ACNGT	2 cut(s)	172, 320
HpyCH4IV	ACGT	3 cut(s)	181, 584, 858
HpyCH4V	TGCA	4 cut(s)	77, 205, 254, 356
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 65, 74, 260
HpyF3I	CTNAG	3 cut(s)	71, 441, 771
HpySE526I	ACGT	3 cut(s)	181, 584, 858
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	3 cut(s)	31, 218, 595
HspAI	GCGC	2 cut(s)	42, 87
KasI	GGCGCC	1 cut(s)	41
Kzo9I	GATC	4 cut(s)	82, 675, 701, 774
LmnI	GCTCC	1 cut(s)	835
Lsp1109I	GCAGC	1 cut(s)	238
LweI	GCATC	2 cut(s)	192, 364
MaeII	ACGT	3 cut(s)	181, 584, 858
MaeIII	GTNAC	2 cut(s)	162, 322
MalI	GATC	4 cut(s)	84, 677, 703, 776
MbiI	CCGCTC	1 cut(s)	68
MboI	GATC	4 cut(s)	82, 675, 701, 774
MfeI	CAATTG	1 cut(s)	627
MflI	RGATCY	2 cut(s)	675, 774
MhlI	GDGCHC	1 cut(s)	472
MluCI	AATT	4 cut(s)	309, 565, 627, 709
Mly113I	GGCGCC	1 cut(s)	42
MmeI	TCCRAC	3 cut(s)	57, 168, 204
MnlI	CCTC	8 cut(s)	47, 55, 73, 297, 436, 491, 777, 796
MroXI	GAANNNNTTC	2 cut(s)	521, 819
MseI	TTAA	2 cut(s)	99, 753
MspI	CCGG	2 cut(s)	53, 132
MspR9I	CCNGG	1 cut(s)	654
MunI	CAATTG	1 cut(s)	627
Mva1269I	GAATGC	1 cut(s)	139
MvaI	CCWGG	1 cut(s)	654
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	4 cut(s)	62, 65, 74, 260
NarI	GGCGCC	1 cut(s)	42
NdeII	GATC	4 cut(s)	82, 675, 701, 774
NlaIII	CATG	3 cut(s)	31, 218, 595
NlaIV	GGNNCC	1 cut(s)	43
NmeAIII	GCCGAG	1 cut(s)	18
NmuCI	GTSAC	1 cut(s)	162
NspI	RCATGY	1 cut(s)	31
PciI	ACATGT	1 cut(s)	27
PcsI	WCGNNNNNNNCGW	2 cut(s)	30, 324
PctI	GAATGC	1 cut(s)	139
PdmI	GAANNNNTTC	2 cut(s)	521, 819
PfeI	GAWTC	2 cut(s)	350, 522
PkrI	GCNGC	5 cut(s)	58, 61, 64, 67, 253
PluTI	GGCGCC	1 cut(s)	45
PscI	ACATGT	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	652
PspGI	CCWGG	1 cut(s)	652
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	1 cut(s)	361
PstI	CTGCAG	1 cut(s)	358
PsuI	RGATCY	2 cut(s)	675, 774
RsaI	GTAC	2 cut(s)	479, 857
RsaNI	GTAC	2 cut(s)	478, 856
SaqAI	TTAA	2 cut(s)	99, 753
SatI	GCNGC	5 cut(s)	57, 60, 63, 66, 252
Sau3AI	GATC	4 cut(s)	82, 675, 701, 774
Sau96I	GGNCC	1 cut(s)	361
ScrFI	CCNGG	1 cut(s)	654
SduI	GDGCHC	1 cut(s)	472
SfaNI	GCATC	2 cut(s)	192, 364
SfcI	CTRYAG	1 cut(s)	354
SfoI	GGCGCC	1 cut(s)	43
SinI	GGWCC	1 cut(s)	361
SmlI	CTYRAG	3 cut(s)	107, 482, 530
SmoI	CTYRAG	3 cut(s)	107, 482, 530
Sse9I	AATT	4 cut(s)	309, 565, 627, 709
SsiI	CCGC	4 cut(s)	57, 60, 63, 66
SspDI	GGCGCC	1 cut(s)	41
StyD4I	CCNGG	1 cut(s)	652
StyI	CCWWGG	1 cut(s)	364
TaaI	ACNGT	2 cut(s)	172, 320
TaiI	ACGT	3 cut(s)	184, 587, 861
TaqI	TCGA	1 cut(s)	24
TasI	AATT	4 cut(s)	309, 565, 627, 709
TauI	GCSGC	4 cut(s)	59, 62, 65, 68
TfiI	GAWTC	2 cut(s)	350, 522
Tru1I	TTAA	2 cut(s)	99, 753
Tru9I	TTAA	2 cut(s)	99, 753
TscAI	CASTG	2 cut(s)	363, 385
TseFI	GTSAC	1 cut(s)	162
TseI	GCWGC	1 cut(s)	251
Tsp45I	GTSAC	1 cut(s)	162
TspDTI	ATGAA	8 cut(s)	297, 363, 434, 444, 477, 525, 621, 902
TspGWI	ACGGA	1 cut(s)	650
TspRI	CASTG	2 cut(s)	363, 385
VpaK11BI	GGWCC	1 cut(s)	361
XapI	RAATTY	2 cut(s)	565, 709
XceI	RCATGY	1 cut(s)	31
XmnI	GAANNNNTTC	2 cut(s)	521, 819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.