Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Reverse (-)

232428 .. 233611

Gene Structure 1184 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g00310.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGATTGATGACGATGAACCTATTTTGGAGAAGGCAATTGGGACGGAGATTGATTGGTATCCTGGGAAGAGCTTGACGCAGAAGATCTTGAAGAAGAAGCCAAGAAAGGGATCAAAGAAGGCTAAACCCATAACTAAAACTGAAGACTGTGAAAGCTTCTTTAACTTCTTCAACCCTCTTGAGATACCTGATACTGATGATGGATTTGATGAGGAAACTGCTGAAGAACTTCAAAGTCAGATGGAGAAGGATTACGACATTGGGTACGTGGTGGTATTCTTTTACTTATGTCTAATGAATTCACTCTGTTTACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

106

Amino Acids

12.15

Weight (kDa)

4.43

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	1 - 63	6.7e-14	Nucleosome assembly protein (NAP)
NAP	PF00956	65 - 127	1.1e-13	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	118
AcsI	RAATTY	1 cut(s)	298
AcuI	CTGAAG	2 cut(s)	162, 243
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	1 cut(s)	107
AgsI	TTSAA	3 cut(s)	91, 172, 233
AjnI	CCWGG	1 cut(s)	61
AluBI	AGCT	2 cut(s)	72, 156
AluI	AGCT	2 cut(s)	72, 156
AlwI	GGATC	1 cut(s)	118
ApoI	RAATTY	1 cut(s)	298
Asp700I	GAANNNNTTC	1 cut(s)	228
BbsI	GAAGAC	1 cut(s)	150
BccI	CCATC	2 cut(s)	194, 235
BciT130I	CCWGG	1 cut(s)	63
BciVI	GTATCC	1 cut(s)	69
BfuI	GTATCC	1 cut(s)	69
BglII	AGATCT	1 cut(s)	84
Bme1390I	CCNGG	1 cut(s)	63
BmrFI	CCNGG	1 cut(s)	63
BpiI	GAAGAC	1 cut(s)	150
BpuEI	CTTGAG	1 cut(s)	200
BsaAI	YACGTR	1 cut(s)	268
BsaBI	GATNNNNATC	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	62
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
Bse8I	GATNNNNATC	1 cut(s)	57
BseBI	CCWGG	1 cut(s)	63
BseDI	CCNNGG	1 cut(s)	62
BseJI	GATNNNNATC	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	107
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	1 cut(s)	107
BsmFI	GGGAC	1 cut(s)	55
Bsp143I	GATC	2 cut(s)	84, 110
BspPI	GGATC	1 cut(s)	118
BspQI	GCTCTTC	1 cut(s)	62
BssECI	CCNNGG	1 cut(s)	62
BssMI	GATC	2 cut(s)	84, 110
Bst2UI	CCWGG	1 cut(s)	63
Bst4CI	ACNGT	2 cut(s)	149, 315
Bst6I	CTCTTC	1 cut(s)	62
BstBAI	YACGTR	1 cut(s)	268
BstKTI	GATC	2 cut(s)	87, 113
BstMBI	GATC	2 cut(s)	84, 110
BstNI	CCWGG	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	61
BstV2I	GAAGAC	1 cut(s)	150
BstX2I	RGATCY	1 cut(s)	84
BstYI	RGATCY	1 cut(s)	84
BsuI	GTATCC	1 cut(s)	69
CseI	GACGC	1 cut(s)	85
Csp6I	GTAC	1 cut(s)	265
CviJI	RGCY	4 cut(s)	72, 100, 122, 156
CviKI_1	RGCY	4 cut(s)	72, 100, 122, 156
CviQI	GTAC	1 cut(s)	265
DpnI	GATC	2 cut(s)	86, 112
DpnII	GATC	2 cut(s)	84, 110
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco57I	CTGAAG	2 cut(s)	162, 243
EcoRI	GAATTC	1 cut(s)	298
EcoRII	CCWGG	1 cut(s)	61
FaiI	YATR	2 cut(s)	131, 289
FaqI	GGGAC	1 cut(s)	55
HgaI	GACGC	1 cut(s)	85
HindIII	AAGCTT	1 cut(s)	154
Hpy166II	GTNNAC	1 cut(s)	311
Hpy188I	TCNGA	1 cut(s)	240
Hpy188III	TCNNGA	2 cut(s)	88, 179
Hpy8I	GTNNAC	1 cut(s)	311
HpyAV	CCTTC	3 cut(s)	25, 112, 241
HpyCH4III	ACNGT	2 cut(s)	149, 315
HpyCH4IV	ACGT	1 cut(s)	267
HpySE526I	ACGT	1 cut(s)	267
Kzo9I	GATC	2 cut(s)	84, 110
LguI	GCTCTTC	1 cut(s)	62
LpnPI	CCDG	3 cut(s)	48, 75, 201
MaeII	ACGT	1 cut(s)	267
MalI	GATC	2 cut(s)	86, 112
MboI	GATC	2 cut(s)	84, 110
MboII	GAAGA	7 cut(s)	79, 94, 103, 106, 155, 160, 236
MfeI	CAATTG	1 cut(s)	36
MflI	RGATCY	1 cut(s)	84
MluCI	AATT	2 cut(s)	36, 298
MnlI	CCTC	2 cut(s)	186, 205
MroXI	GAANNNNTTC	1 cut(s)	228
MseI	TTAA	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	63
MunI	CAATTG	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	63
NdeII	GATC	2 cut(s)	84, 110
PciSI	GCTCTTC	1 cut(s)	62
PdmI	GAANNNNTTC	1 cut(s)	228
Ppu21I	YACGTR	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	84
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SapI	GCTCTTC	1 cut(s)	62
SaqAI	TTAA	1 cut(s)	162
Sau3AI	GATC	2 cut(s)	84, 110
ScrFI	CCNGG	1 cut(s)	63
SetI	ASST	5 cut(s)	22, 74, 158, 190, 270
SgeI	CNNG	8 cut(s)	74, 75, 85, 100, 114, 191, 200, 280
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	2 cut(s)	36, 298
StyD4I	CCNGG	1 cut(s)	61
TaaI	ACNGT	2 cut(s)	149, 315
TaiI	ACGT	1 cut(s)	270
TasI	AATT	2 cut(s)	36, 298
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TspDTI	ATGAA	2 cut(s)	30, 311
TspGWI	ACGGA	1 cut(s)	59
XapI	RAATTY	1 cut(s)	298
XmnI	GAANNNNTTC	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.