Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Forward (+)

4063263 .. 4064689

Gene Structure 1427 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42078

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGATTTCATTGGAACTCAACTTGTTGGAGAGAAAGATGAAGTACGTTGCAAGGGACAAAGGAGATGAAGCCACCAAAGAGAAAGGAATCCCTCAATTTTGGCTTACTGCAATGAAGAATCATAAATTACTTGCTCAGGAGCACGATGAAGTGGCGCTCAAGTATCTGAAAGATATCAAGTGGTATAGGATATATGGGGGAAGTTTCAGGCTGGAGTTTGTCTTTCAACAGCCTAATCCTTATTTTGAAAATGAAGTCCTGACCAAATCATATAAGCGGCCTCTGATGGAGAAAACAACTGGGTGTGTCATCAAATGGCATCATGGTAAAGACTTGACACATAAGTTTTTAGAGGGAATGTCGAAGAATTCCAAGCGCATGACCAAATCCTGTGAAAGCGTCTTTAACTTCTTCAACCCTCCTCAACTCTGTCTTCACGAGAAACATATTGATTATAATGATGGATATCTAAATGGAGAAGTCAAAAGTAAACTGAATTATGATTTTTTCATCGGTAAAATAATCCGCGACAAAATCATTCCTCATGCTATTTCATGGTTCACACGGGAGGCTCTTGAACCCGGAGGTGAGTTTGAAGATTTGCAAGATGATTGGTATGATTACTCAGATGATGATGAGGACGCGGAGGCCATCAAGAATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

221

Amino Acids

26.19

Weight (kDa)

6.09

Isoelectric Point (pI)

26.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	17 - 190	1.1e-45	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	456
AccII	CGCG	2 cut(s)	528, 644
AciI	CCGC	3 cut(s)	277, 526, 644
AcsI	RAATTY	2 cut(s)	367, 658
AfaI	GTAC	1 cut(s)	44
AgsI	TTSAA	5 cut(s)	227, 248, 415, 578, 596
Alw21I	GWGCWC	1 cut(s)	144
AoxI	GGCC	2 cut(s)	278, 648
ApoI	RAATTY	2 cut(s)	367, 658
AspLEI	GCGC	2 cut(s)	157, 378
AsuC2I	CCSGG	1 cut(s)	582
AsuHPI	GGTGA	1 cut(s)	599
BauI	CACGAG	1 cut(s)	437
BbsI	GAAGAC	1 cut(s)	425
Bbv12I	GWGCWC	1 cut(s)	144
BccI	CCATC	3 cut(s)	280, 455, 659
BcnI	CCSGG	1 cut(s)	582
BfoI	RGCGCY	1 cut(s)	158
BisI	GCNGC	1 cut(s)	278
BlsI	GCNGC	1 cut(s)	279
Bme1390I	CCNGG	1 cut(s)	582
BmrFI	CCNGG	1 cut(s)	582
BmrI	ACTGGG	1 cut(s)	309
BmsI	GCATC	1 cut(s)	328
BmuI	ACTGGG	1 cut(s)	309
BpiI	GAAGAC	1 cut(s)	425
BpmI	CTGGAG	1 cut(s)	233
Bpu10I	CCTNAGC	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	143
BpuMI	CCSGG	1 cut(s)	582
BsaBI	GATNNNNATC	1 cut(s)	465
Bse1I	ACTGG	1 cut(s)	304
Bse3DI	GCAATG	1 cut(s)	117
Bse8I	GATNNNNATC	1 cut(s)	465
BseJI	GATNNNNATC	1 cut(s)	465
BseMI	GCAATG	1 cut(s)	117
BseMII	CTCAG	2 cut(s)	149, 639
BseNI	ACTGG	1 cut(s)	304
BseRI	GAGGAG	1 cut(s)	411
Bsh1236I	CGCG	2 cut(s)	528, 644
BshFI	GGCC	2 cut(s)	280, 650
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	582
BslFI	GGGAC	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	68
BsnI	GGCC	2 cut(s)	280, 650
Bsp1286I	GDGCHC	1 cut(s)	144
BspACI	CCGC	3 cut(s)	277, 526, 644
BspANI	GGCC	2 cut(s)	280, 650
BspCNI	CTCAG	2 cut(s)	148, 638
BspFNI	CGCG	2 cut(s)	528, 644
BsrDI	GCAATG	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	304
BssSI	CACGAG	1 cut(s)	437
Bst2BI	CACGAG	1 cut(s)	437
BstDEI	CTNAG	2 cut(s)	135, 625
BstFNI	CGCG	2 cut(s)	528, 644
BstH2I	RGCGCY	1 cut(s)	158
BstHHI	GCGC	2 cut(s)	157, 378
BstSCI	CCNGG	1 cut(s)	580
BstUI	CGCG	2 cut(s)	528, 644
BstV2I	GAAGAC	1 cut(s)	425
BsuRI	GGCC	2 cut(s)	280, 650
CfoI	GCGC	2 cut(s)	157, 378
CseI	GACGC	2 cut(s)	388, 650
Csp6I	GTAC	1 cut(s)	43
CviAII	CATG	4 cut(s)	323, 379, 545, 555
CviJI	RGCY	7 cut(s)	71, 103, 211, 232, 280, 572, 650
CviKI_1	RGCY	7 cut(s)	71, 103, 211, 232, 280, 572, 650
CviQI	GTAC	1 cut(s)	43
DdeI	CTNAG	2 cut(s)	135, 625
Eco32I	GATATC	2 cut(s)	175, 467
EcoRI	GAATTC	1 cut(s)	367
EcoRV	GATATC	2 cut(s)	175, 467
FaeI	CATG	4 cut(s)	326, 382, 548, 558
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	4 cut(s)	322, 378, 544, 554
Fnu4HI	GCNGC	1 cut(s)	278
Fsp4HI	GCNGC	1 cut(s)	278
GlaI	GCGC	2 cut(s)	156, 377
GluI	GCNGC	1 cut(s)	278
GsuI	CTGGAG	1 cut(s)	233
HaeII	RGCGCY	1 cut(s)	158
HaeIII	GGCC	2 cut(s)	280, 650
HapII	CCGG	1 cut(s)	582
HgaI	GACGC	2 cut(s)	388, 650
HhaI	GCGC	2 cut(s)	157, 378
Hin1II	CATG	4 cut(s)	326, 382, 548, 558
Hin6I	GCGC	2 cut(s)	155, 376
HinP1I	GCGC	2 cut(s)	155, 376
HinfI	GANTC	2 cut(s)	87, 118
HpaII	CCGG	1 cut(s)	582
HphI	GGTGA	1 cut(s)	599
Hpy166II	GTNNAC	2 cut(s)	491, 561
Hpy188I	TCNGA	3 cut(s)	168, 285, 628
Hpy188III	TCNNGA	5 cut(s)	137, 259, 437, 575, 655
Hpy8I	GTNNAC	2 cut(s)	491, 561
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	3 cut(s)	50, 110, 604
HpyF3I	CTNAG	2 cut(s)	135, 625
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	4 cut(s)	326, 382, 548, 558
HspAI	GCGC	2 cut(s)	155, 376
LmnI	GCTCC	1 cut(s)	139
LpnPI	CCDG	7 cut(s)	122, 193, 197, 272, 285, 403, 595
LweI	GCATC	1 cut(s)	328
MaeII	ACGT	1 cut(s)	45
MboII	GAAGA	5 cut(s)	127, 376, 403, 425, 608
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	5 cut(s)	95, 125, 367, 496, 658
MmeI	TCCRAC	1 cut(s)	6
MseI	TTAA	1 cut(s)	405
MspI	CCGG	1 cut(s)	582
MspR9I	CCNGG	1 cut(s)	582
MvnI	CGCG	2 cut(s)	528, 644
NciI	CCSGG	1 cut(s)	582
NlaIII	CATG	4 cut(s)	326, 382, 548, 558
PfeI	GAWTC	2 cut(s)	87, 118
PkrI	GCNGC	1 cut(s)	279
PsiI	TTATAA	1 cut(s)	456
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	582
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	2 cut(s)	48, 589
SfaNI	GCATC	1 cut(s)	328
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	5 cut(s)	95, 125, 367, 496, 658
SsiI	CCGC	3 cut(s)	277, 526, 644
StyD4I	CCNGG	1 cut(s)	580
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	1 cut(s)	362
TasI	AATT	5 cut(s)	95, 125, 367, 496, 658
TauI	GCSGC	1 cut(s)	280
TfiI	GAWTC	2 cut(s)	87, 118
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TspDTI	ATGAA	7 cut(s)	53, 81, 128, 162, 267, 499, 543
XapI	RAATTY	2 cut(s)	367, 658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.