Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Reverse (-)

6634758 .. 6637770

Gene Structure 3013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG085200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAGCGCCGACAAGGATAACAACATCAACATGGCCGATCTCGCCACCGCTTTGAAGGAAGAGAACCAGGAAGGAATCCTCAACGCGCTTAAGGGTTTAGCTGGTGGTCAGCATGTCGAGGAAGTCCTCAGCAGTTTATCTCCTAATGTCCGGAAGCGTGTTGATTTTCTTAGGGAAATCCAGAGCCAACACGATGAATTAGAGACCAAGTTTTTTGAGGAGAGGGCTGCTCTGGAAGCTAGGTATCAGAAGTTGTATCAACCTCTTTACAACAAGCGTTACGAGATTGTGACTGGTGCTGTTGAAGCTGAAGGAGTTACTACTGAAGCATCCACAAATGAAGAGGATGCTGAAGGTAGAGTATCAGGTCAGAAGGGTGCAAGAGCACAACTTGGTGATGGTCAACAGGGTGAGAGGCCTCCAGAGTGCAAACAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

146

Amino Acids

16.22

Weight (kDa)

4.81

Isoelectric Point (pI)

49.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	52 - 116	7.2e-15	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	86
AccIII	TCCGGA	1 cut(s)	150
AciI	CCGC	1 cut(s)	48
AcoI	YGGCCR	1 cut(s)	33
AcuI	CTGAAG	3 cut(s)	330, 345, 372
AflII	CTTAAG	1 cut(s)	89
AgsI	TTSAA	2 cut(s)	55, 305
AjnI	CCWGG	1 cut(s)	66
AluBI	AGCT	3 cut(s)	101, 239, 308
AluI	AGCT	3 cut(s)	101, 239, 308
Alw21I	GWGCWC	1 cut(s)	388
Alw26I	GTCTC	1 cut(s)	197
Aor13HI	TCCGGA	1 cut(s)	150
AoxI	GGCC	2 cut(s)	33, 416
ApeKI	GCWGC	1 cut(s)	227
AspLEI	GCGC	2 cut(s)	8, 88
AsuHPI	GGTGA	2 cut(s)	407, 422
Bbv12I	GWGCWC	1 cut(s)	388
BbvCI	CCTCAGC	1 cut(s)	128
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	1 cut(s)	392
BciT130I	CCWGG	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	1 cut(s)	240
BfoI	RGCGCY	1 cut(s)	9
BfrI	CTTAAG	1 cut(s)	89
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
Bme1390I	CCNGG	1 cut(s)	68
BmrFI	CCNGG	1 cut(s)	68
BmsI	GCATC	2 cut(s)	337, 338
BplI	GAGNNNNNCTC	2 cut(s)	214, 246
BpmI	CTGGAG	1 cut(s)	405
Bpu10I	CCTNAGC	1 cut(s)	128
BsaI	GGTCTC	1 cut(s)	197
BsaWI	WCCGGW	1 cut(s)	150
Bse1I	ACTGG	1 cut(s)	298
BseAI	TCCGGA	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	68
BseGI	GGATG	2 cut(s)	329, 352
BseMII	CTCAG	1 cut(s)	142
BseNI	ACTGG	1 cut(s)	298
BseRI	GAGGAG	1 cut(s)	233
BseXI	GCAGC	1 cut(s)	214
Bsh1236I	CGCG	1 cut(s)	86
BshFI	GGCC	2 cut(s)	35, 418
BsiHKAI	GWGCWC	1 cut(s)	388
BsiSI	CCGG	1 cut(s)	151
BsmAI	GTCTC	1 cut(s)	197
BsnI	GGCC	2 cut(s)	35, 418
Bso31I	GGTCTC	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	388
Bsp13I	TCCGGA	1 cut(s)	150
Bsp143I	GATC	1 cut(s)	37
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	2 cut(s)	35, 418
BspCNI	CTCAG	1 cut(s)	141
BspEI	TCCGGA	1 cut(s)	150
BspFNI	CGCG	1 cut(s)	86
BspTI	CTTAAG	1 cut(s)	89
BspTNI	GGTCTC	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	298
BssMI	GATC	1 cut(s)	37
Bst2UI	CCWGG	1 cut(s)	68
Bst6I	CTCTTC	2 cut(s)	54, 336
BstAFI	CTTAAG	1 cut(s)	89
BstDEI	CTNAG	2 cut(s)	128, 170
BstF5I	GGATG	2 cut(s)	329, 352
BstFNI	CGCG	1 cut(s)	86
BstH2I	RGCGCY	1 cut(s)	9
BstHHI	GCGC	2 cut(s)	8, 88
BstKTI	GATC	1 cut(s)	40
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 236, 305
BstNI	CCWGG	1 cut(s)	68
BstNSI	RCATGY	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	66
BstUI	CGCG	1 cut(s)	86
BstV1I	GCAGC	1 cut(s)	214
BsuRI	GGCC	2 cut(s)	35, 418
BtsCI	GGATG	2 cut(s)	329, 352
CfoI	GCGC	2 cut(s)	8, 88
CviAII	CATG	2 cut(s)	31, 113
CviJI	RGCY	7 cut(s)	35, 101, 186, 227, 239, 308, 418
CviKI_1	RGCY	7 cut(s)	35, 101, 186, 227, 239, 308, 418
DdeI	CTNAG	2 cut(s)	128, 170
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
EaeI	YGGCCR	1 cut(s)	33
Eam1104I	CTCTTC	2 cut(s)	54, 336
EarI	CTCTTC	2 cut(s)	54, 336
Eco147I	AGGCCT	1 cut(s)	418
Eco31I	GGTCTC	1 cut(s)	197
Eco57I	CTGAAG	3 cut(s)	330, 345, 372
EcoRII	CCWGG	1 cut(s)	66
FaeI	CATG	2 cut(s)	34, 116
FaiI	YATR	2 cut(s)	32, 114
FatI	CATG	2 cut(s)	30, 112
Fnu4HI	GCNGC	1 cut(s)	228
FokI	GGATG	2 cut(s)	316, 359
Fsp4HI	GCNGC	1 cut(s)	228
FspBI	CTAG	1 cut(s)	240
GlaI	GCGC	2 cut(s)	7, 87
GluI	GCNGC	1 cut(s)	228
GsuI	CTGGAG	1 cut(s)	405
HaeII	RGCGCY	1 cut(s)	9
HaeIII	GGCC	2 cut(s)	35, 418
HapII	CCGG	1 cut(s)	151
HhaI	GCGC	2 cut(s)	8, 88
Hin1II	CATG	2 cut(s)	34, 116
Hin6I	GCGC	2 cut(s)	6, 86
HinP1I	GCGC	2 cut(s)	6, 86
HincII	GTYRAC	1 cut(s)	404
HindII	GTYRAC	1 cut(s)	404
HinfI	GANTC	1 cut(s)	75
HpaII	CCGG	1 cut(s)	151
HphI	GGTGA	2 cut(s)	407, 422
Hpy166II	GTNNAC	1 cut(s)	404
Hpy188I	TCNGA	2 cut(s)	249, 372
Hpy188III	TCNNGA	4 cut(s)	151, 181, 233, 422
Hpy8I	GTNNAC	1 cut(s)	404
HpyAV	CCTTC	5 cut(s)	49, 65, 305, 347, 367
HpyCH4V	TGCA	2 cut(s)	380, 429
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 236, 305
HpyF3I	CTNAG	2 cut(s)	128, 170
Hsp92II	CATG	2 cut(s)	34, 116
HspAI	GCGC	2 cut(s)	6, 86
Kpn2I	TCCGGA	1 cut(s)	150
Kzo9I	GATC	1 cut(s)	37
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	2 cut(s)	337, 338
MaeI	CTAG	1 cut(s)	240
MaeIII	GTNAC	3 cut(s)	278, 289, 316
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	2 cut(s)	71, 353
MhlI	GDGCHC	1 cut(s)	388
MluCI	AATT	1 cut(s)	197
MnlI	CCTC	9 cut(s)	89, 112, 137, 211, 216, 273, 337, 408, 429
MroI	TCCGGA	1 cut(s)	150
MseI	TTAA	1 cut(s)	90
MslI	CAYNNNNRTG	1 cut(s)	29
MspCI	CTTAAG	1 cut(s)	89
MspI	CCGG	1 cut(s)	151
MspR9I	CCNGG	1 cut(s)	68
MvaI	CCWGG	1 cut(s)	68
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	3 cut(s)	41, 236, 305
NdeII	GATC	1 cut(s)	37
NlaIII	CATG	2 cut(s)	34, 116
NmuCI	GTSAC	1 cut(s)	289
NspI	RCATGY	1 cut(s)	116
PceI	AGGCCT	1 cut(s)	418
PfeI	GAWTC	1 cut(s)	75
PkrI	GCNGC	1 cut(s)	229
Psp6I	CCWGG	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	66
RseI	CAYNNNNRTG	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	1 cut(s)	37
ScrFI	CCNGG	1 cut(s)	68
SduI	GDGCHC	1 cut(s)	388
SetI	ASST	7 cut(s)	103, 241, 245, 265, 310, 358, 370
SfaNI	GCATC	2 cut(s)	337, 338
SmiMI	CAYNNNNRTG	1 cut(s)	29
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	1 cut(s)	197
SseBI	AGGCCT	1 cut(s)	418
SsiI	CCGC	1 cut(s)	48
SspMI	CTAG	1 cut(s)	240
StuI	AGGCCT	1 cut(s)	418
StyD4I	CCNGG	1 cut(s)	66
TaqI	TCGA	1 cut(s)	117
TasI	AATT	1 cut(s)	197
TfiI	GAWTC	1 cut(s)	75
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	1 cut(s)	227
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	2 cut(s)	210, 354
Vha464I	CTTAAG	1 cut(s)	89
XceI	RCATGY	1 cut(s)	116
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.