Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Forward (+)

23587484 .. 23589423

Gene Structure 1940 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00101720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGAGTTCCTATGGATGTGGCTTCAATGGCAATGACCGCAATCTCGATTCCGAACGAAGAGATCCTCGTCTTACTGCTCAGAAGCAGGCCCAGCATAAGAAGTTGGAGAAGAAATTTTTTAAGGACAGAGCTGCACTGGTAGACAAATACCATCAGCTCTACAAACCTCTGTACGAAAAGAGATATGAAATTGTTAATGGTATATTTGAAGTCGGAGTAAAAACTCAAGAACAGTTAGAAGATGACGAAGTCAATGAAGAGAAAGGAGTGCCTAACTTTTGGCTGTCCGCGCTGAAGAATAATAAGAAACTTTTGATTATGAACCATGATGAACGCGCTCTCCAGTATCTGAATGATATCAAGTGGTCCAGGATACATGATCCTAAGGGATTCAGGCTGGAATTCTTATTTGATCCTAATCCCTACTTTCGAAACTCCGTCCTGACAAAAACATATTACATGGTTGAAGAACATGAACCGATATGGAGCAAGGAAATCGGGACGGAGATTGATTGGTATCCCGGGCAATGCTTGACAATCAATCCAAGAAAGGATCCAAAGAGTGCCAAGTCTATGACTCCAGCTGATATTTGTTCCAGCTTCTTTACGTTTTTCAAACTTCCCCAGCTTGATGATTATACTGGTGCAGATATGGTTTCTATGTTCAAGATTAGGATAGAAAACGACCGTGAAATGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

233

Amino Acids

27.57

Weight (kDa)

6.54

Isoelectric Point (pI)

29.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	27 - 214	1.8e-50	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	141
AccII	CGCG	2 cut(s)	290, 336
AciI	CCGC	2 cut(s)	37, 288
AclWI	GGATC	5 cut(s)	56, 374, 407, 548, 561
AcsI	RAATTY	2 cut(s)	113, 401
AcuI	CTGAAG	1 cut(s)	314
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	1 cut(s)	694
AgsI	TTSAA	5 cut(s)	25, 209, 467, 616, 667
AjnI	CCWGG	1 cut(s)	368
AloI	GAACNNNNNNTCC	2 cut(s)	324, 356
AluBI	AGCT	5 cut(s)	131, 157, 584, 600, 628
AluI	AGCT	5 cut(s)	131, 157, 584, 600, 628
AlwI	GGATC	5 cut(s)	56, 374, 407, 548, 561
AlwNI	CAGNNNCTG	1 cut(s)	349
Ama87I	CYCGRG	1 cut(s)	521
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	1 cut(s)	131
ApoI	RAATTY	2 cut(s)	113, 401
AspLEI	GCGC	2 cut(s)	292, 338
AspS9I	GGNCC	2 cut(s)	88, 366
AsuC2I	CCSGG	2 cut(s)	522, 523
AsuII	TTCGAA	1 cut(s)	430
AvaI	CYCGRG	1 cut(s)	521
AvaII	GGWCC	1 cut(s)	366
AxyI	CCTNAGG	1 cut(s)	384
BamHI	GGATCC	1 cut(s)	553
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	1 cut(s)	159
BcgI	CGANNNNNNTGC	2 cut(s)	478, 512
BciT130I	CCWGG	1 cut(s)	370
BciVI	GTATCC	2 cut(s)	366, 528
BcnI	CCSGG	2 cut(s)	522, 523
BfuI	GTATCC	2 cut(s)	366, 528
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
Bme1390I	CCNGG	3 cut(s)	370, 522, 523
Bme18I	GGWCC	1 cut(s)	366
BmeT110I	CYCGRG	1 cut(s)	521
BmgT120I	GGNCC	2 cut(s)	88, 366
BmiI	GGNNCC	1 cut(s)	555
BmrFI	CCNGG	3 cut(s)	370, 522, 523
BpmI	CTGGAG	2 cut(s)	326, 564
Bpu14I	TTCGAA	1 cut(s)	430
BpuEI	CTTGAG	1 cut(s)	210
BpuMI	CCSGG	2 cut(s)	522, 523
BsaBI	GATNNNNATC	2 cut(s)	417, 516
BsaJI	CCNNGG	1 cut(s)	521
BsaXI	ACNNNNNCTCC	2 cut(s)	324, 354
Bsc4I	CCNNNNNNNGG	1 cut(s)	694
Bse1I	ACTGG	3 cut(s)	141, 343, 646
Bse21I	CCTNAGG	1 cut(s)	384
Bse3DI	GCAATG	2 cut(s)	37, 533
Bse8I	GATNNNNATC	2 cut(s)	417, 516
BseBI	CCWGG	1 cut(s)	370
BseDI	CCNNGG	1 cut(s)	521
BseGI	GGATG	1 cut(s)	20
BseJI	GATNNNNATC	2 cut(s)	417, 516
BseLI	CCNNNNNNNGG	1 cut(s)	694
BseMI	GCAATG	2 cut(s)	37, 533
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	3 cut(s)	141, 343, 646
BseXI	GCAGC	1 cut(s)	118
BseYI	CCCAGC	2 cut(s)	90, 624
BsgI	GTGCAG	2 cut(s)	117, 666
Bsh1236I	CGCG	2 cut(s)	290, 336
Bsh1285I	CGRYCG	1 cut(s)	688
BshFI	GGCC	1 cut(s)	89
BsiEI	CGRYCG	1 cut(s)	688
BsiHKCI	CYCGRG	1 cut(s)	521
BsiSI	CCGG	1 cut(s)	522
BslFI	GGGAC	1 cut(s)	514
BslI	CCNNNNNNNGG	1 cut(s)	694
BsmFI	GGGAC	1 cut(s)	514
BsnI	GGCC	1 cut(s)	89
BsoBI	CYCGRG	1 cut(s)	521
Bsp119I	TTCGAA	1 cut(s)	430
Bsp143I	GATC	4 cut(s)	61, 379, 412, 553
BspACI	CCGC	2 cut(s)	37, 288
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	1 cut(s)	91
BspFNI	CGCG	2 cut(s)	290, 336
BspLI	GGNNCC	1 cut(s)	555
BspPI	GGATC	5 cut(s)	56, 374, 407, 548, 561
BspT104I	TTCGAA	1 cut(s)	430
BsrDI	GCAATG	2 cut(s)	37, 533
BsrI	ACTGG	3 cut(s)	141, 343, 646
BssECI	CCNNGG	1 cut(s)	521
BssMI	GATC	4 cut(s)	61, 379, 412, 553
Bst2UI	CCWGG	1 cut(s)	370
Bst4CI	ACNGT	2 cut(s)	234, 689
Bst6I	CTCTTC	2 cut(s)	52, 252
BstBI	TTCGAA	1 cut(s)	430
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	2 cut(s)	78, 384
BstF5I	GGATG	1 cut(s)	20
BstFNI	CGCG	2 cut(s)	290, 336
BstHHI	GCGC	2 cut(s)	292, 338
BstKTI	GATC	4 cut(s)	64, 382, 415, 556
BstMBI	GATC	4 cut(s)	61, 379, 412, 553
BstMCI	CGRYCG	1 cut(s)	688
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 36, 91, 289
BstNI	CCWGG	1 cut(s)	370
BstSCI	CCNGG	3 cut(s)	368, 520, 521
BstUI	CGCG	2 cut(s)	290, 336
BstV1I	GCAGC	1 cut(s)	118
BstX2I	RGATCY	2 cut(s)	61, 553
BstYI	RGATCY	2 cut(s)	61, 553
Bsu36I	CCTNAGG	1 cut(s)	384
BsuI	GTATCC	2 cut(s)	366, 528
BsuRI	GGCC	1 cut(s)	89
BtsCI	GGATG	1 cut(s)	20
BtsIMutI	CAGTG	1 cut(s)	134
Cac8I	GCNNGC	1 cut(s)	87
CaiI	CAGNNNCTG	1 cut(s)	349
CfoI	GCGC	2 cut(s)	292, 338
Cfr13I	GGNCC	2 cut(s)	88, 366
Cfr9I	CCCGGG	1 cut(s)	521
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	4 cut(s)	326, 377, 460, 473
CviJI	RGCY	9 cut(s)	21, 89, 131, 157, 283, 397, 584, 600, 628
CviKI_1	RGCY	9 cut(s)	21, 89, 131, 157, 283, 397, 584, 600, 628
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	2 cut(s)	78, 384
DpnI	GATC	4 cut(s)	63, 381, 414, 555
DpnII	GATC	4 cut(s)	61, 379, 412, 553
Eam1104I	CTCTTC	2 cut(s)	52, 252
EarI	CTCTTC	2 cut(s)	52, 252
Eco32I	GATATC	1 cut(s)	358
Eco47I	GGWCC	1 cut(s)	366
Eco57I	CTGAAG	1 cut(s)	314
Eco81I	CCTNAGG	1 cut(s)	384
Eco88I	CYCGRG	1 cut(s)	521
EcoRI	GAATTC	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	368
EcoRV	GATATC	1 cut(s)	358
FaeI	CATG	4 cut(s)	329, 380, 463, 476
FaqI	GGGAC	1 cut(s)	514
FatI	CATG	4 cut(s)	325, 376, 459, 472
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	1 cut(s)	132
FokI	GGATG	1 cut(s)	27
Fsp4HI	GCNGC	1 cut(s)	132
GlaI	GCGC	2 cut(s)	291, 337
GluI	GCNGC	1 cut(s)	132
GsaI	CCCAGC	2 cut(s)	94, 628
GsuI	CTGGAG	2 cut(s)	326, 564
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	1 cut(s)	522
HhaI	GCGC	2 cut(s)	292, 338
Hin1II	CATG	4 cut(s)	329, 380, 463, 476
Hin6I	GCGC	2 cut(s)	290, 336
HinP1I	GCGC	2 cut(s)	290, 336
HinfI	GANTC	3 cut(s)	47, 390, 577
HpaII	CCGG	1 cut(s)	522
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	4 cut(s)	52, 81, 215, 351
Hpy188III	TCNNGA	5 cut(s)	44, 227, 442, 499, 667
Hpy8I	GTNNAC	1 cut(s)	142
HpyCH4III	ACNGT	2 cut(s)	234, 689
HpyCH4IV	ACGT	1 cut(s)	608
HpyCH4V	TGCA	2 cut(s)	134, 647
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 36, 91, 289
HpyF3I	CTNAG	2 cut(s)	78, 384
HpySE526I	ACGT	1 cut(s)	608
Hsp92II	CATG	4 cut(s)	329, 380, 463, 476
HspAI	GCGC	2 cut(s)	290, 336
Kzo9I	GATC	4 cut(s)	61, 379, 412, 553
LmnI	GCTCC	1 cut(s)	486
Lsp1109I	GCAGC	1 cut(s)	118
MaeII	ACGT	1 cut(s)	608
MalI	GATC	4 cut(s)	63, 381, 414, 555
MboI	GATC	4 cut(s)	61, 379, 412, 553
MboII	GAAGA	6 cut(s)	69, 121, 251, 269, 307, 479
MflI	RGATCY	2 cut(s)	61, 553
MluCI	AATT	3 cut(s)	113, 189, 401
MlyI	GAGTC	1 cut(s)	571
MmeI	TCCRAC	2 cut(s)	84, 193
MnlI	CCTC	2 cut(s)	75, 177
MseI	TTAA	2 cut(s)	120, 195
MspA1I	CMGCKG	1 cut(s)	584
MspI	CCGG	1 cut(s)	522
MspR9I	CCNGG	3 cut(s)	370, 522, 523
MvaI	CCWGG	1 cut(s)	370
MvnI	CGCG	2 cut(s)	290, 336
MwoI	GCNNNNNNNGC	4 cut(s)	27, 36, 91, 289
NciI	CCSGG	2 cut(s)	522, 523
NdeII	GATC	4 cut(s)	61, 379, 412, 553
NlaIII	CATG	4 cut(s)	329, 380, 463, 476
NlaIV	GGNNCC	1 cut(s)	555
NspV	TTCGAA	1 cut(s)	430
PfeI	GAWTC	2 cut(s)	47, 390
PflFI	GACNNNGTC	1 cut(s)	248
PfoI	TCCNGGA	1 cut(s)	368
PkrI	GCNGC	1 cut(s)	133
PleI	GAGTC	1 cut(s)	571
PpsI	GAGTC	1 cut(s)	571
Psp6I	CCWGG	1 cut(s)	368
PspFI	CCCAGC	2 cut(s)	90, 624
PspGI	CCWGG	1 cut(s)	368
PspN4I	GGNNCC	1 cut(s)	555
PspPI	GGNCC	2 cut(s)	88, 366
PstNI	CAGNNNCTG	1 cut(s)	349
PsuI	RGATCY	2 cut(s)	61, 553
PsyI	GACNNNGTC	1 cut(s)	248
PvuII	CAGCTG	1 cut(s)	584
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
SaqAI	TTAA	2 cut(s)	120, 195
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	4 cut(s)	61, 379, 412, 553
Sau96I	GGNCC	2 cut(s)	88, 366
SchI	GAGTC	1 cut(s)	571
ScrFI	CCNGG	3 cut(s)	370, 522, 523
SetI	ASST	7 cut(s)	133, 159, 169, 586, 602, 611, 630
SfuI	TTCGAA	1 cut(s)	430
SinI	GGWCC	1 cut(s)	366
SmaI	CCCGGG	1 cut(s)	523
SmlI	CTYRAG	1 cut(s)	225
SmoI	CTYRAG	1 cut(s)	225
Sse9I	AATT	3 cut(s)	113, 189, 401
SsiI	CCGC	2 cut(s)	37, 288
StyD4I	CCNGG	3 cut(s)	368, 520, 521
TaaI	ACNGT	2 cut(s)	234, 689
TaiI	ACGT	1 cut(s)	611
TaqI	TCGA	2 cut(s)	45, 430
TasI	AATT	3 cut(s)	113, 189, 401
TfiI	GAWTC	2 cut(s)	47, 390
Tru1I	TTAA	2 cut(s)	120, 195
Tru9I	TTAA	2 cut(s)	120, 195
TscAI	CASTG	1 cut(s)	141
TseI	GCWGC	1 cut(s)	131
TspDTI	ATGAA	5 cut(s)	201, 270, 335, 345, 489
TspGWI	ACGGA	2 cut(s)	427, 518
TspMI	CCCGGG	1 cut(s)	521
TspRI	CASTG	1 cut(s)	141
Tth111I	GACNNNGTC	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	366
XapI	RAATTY	2 cut(s)	113, 401
XmaI	CCCGGG	1 cut(s)	521
XmiI	GTMKAC	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.