Rh2DG453600

Belongs to the nucleosome assembly protein (NAP) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
65685415 .. 65693057
7643 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG453600.1

Sequence Viewer

Length: 963 bp
ATGAGTTCCTATGGATGTGGCTTCAATGGCAATGACCGCAATCTCGATTCCGAACGAAGAGATCCTGGTCTTACTGCTCAGAAGCAGGCCCAGCATAAGAAGTTGGAGAAGAAATTTTTCAAGGACAGAGCTGCACTGGTAGACAAATACCATCAGCTCTACAAACCTCTGTACGAAAAGAGATATGATATTGTTAATGGAATAACTGAAGTCGGAGTAAAAACTCAAGAACTGTTAGAAGATGACGAAGCCAATGGAGAGAAAGGAGTGCCTGACTTTTGGCTGTCTGCGCTGAAGAATAATAAGAAACTTTTGATTATGAACCATGACGAACGCGCTCTCCAGTATCTGAACGATATCAAGTGGTCCAGGATACATGATCCTAAGGGATTCAGGCTGGAATTTTTATTTGATCCTAATCCTTACTTTCGAAACTCCGTCCTGACAAAAACATATTACATGGTTGAAGAACATGTACCGATATGGAGCAAGGAAATCGGGACGGAGATTGATTGGTATCCCGGGCAATGCTTGACAATCAATCCAAGAACGGACCCAAAGAGTGCCAAGTCTATGACTCCAGCTGATATTTGTTCCAGCTTCTTTACGATTTTCAAACTTCCCCAACATGATGATTATACTGGTGCAGATATGGCTTCTATGTTCAAGACTAGGATAGAAAACGACCGTGAAATGGGCTTAACAATTCGAGACAAGATCATCCCTCACGCAGTGTCATGGTTCGCTGTTAATATAGACGAGCTTGATGATAGTGAAGACGACGATGACAGTGATCATGACTATCATTTTGACTTTGATAGTGATGATGAAGATGACGCGTACAAGAAGTATGCTGCTGCTTATAACAACAAGAAAGAAGAGGAAGATCGCAAAAGAAAGAGAGAGAGTGACTGGACTAATGCTGAGAGAGCAATGGCTAGGTTAACGCTGCGAGAGCAGTAA

Protein Analysis

320

Amino Acids

37.59

Weight (kDa)

5.14

Isoelectric Point (pI)

35.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 27 - 249 6.4e-58 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000381)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 864
AccI GTMKAC 1 cut(s) 141
AccII CGCG 2 cut(s) 336, 839
AciI CCGC 1 cut(s) 37
AclWI GGATC 3 cut(s) 56, 374, 407
AcsI RAATTY 2 cut(s) 113, 401
AcuI CTGAAG 2 cut(s) 228, 314
AdeI CACNNNGTG 1 cut(s) 733
AfaI GTAC 3 cut(s) 173, 477, 842
AfiI CCNNNNNNNGG 1 cut(s) 694
AflIII ACRYGT 2 cut(s) 472, 837
AgsI TTSAA 5 cut(s) 25, 121, 467, 616, 667
AjnI CCWGG 2 cut(s) 64, 368
AloI GAACNNNNNNTCC 2 cut(s) 324, 356
AluBI AGCT 5 cut(s) 131, 157, 584, 600, 763
AluI AGCT 5 cut(s) 131, 157, 584, 600, 763
Alw26I GTCTC 1 cut(s) 705
AlwI GGATC 3 cut(s) 56, 374, 407
AlwNI CAGNNNCTG 1 cut(s) 349
Ama87I CYCGRG 1 cut(s) 521
AoxI GGCC 1 cut(s) 87
ApeKI GCWGC 4 cut(s) 131, 854, 857, 949
ApoI RAATTY 2 cut(s) 113, 401
ArsI GACNNNNNNTTYG 2 cut(s) 791, 823
Asp700I GAANNNNTTC 1 cut(s) 116
AspLEI GCGC 2 cut(s) 292, 338
AspS9I GGNCC 3 cut(s) 88, 366, 553
AsuC2I CCSGG 2 cut(s) 522, 523
AsuII TTCGAA 1 cut(s) 430
AvaI CYCGRG 1 cut(s) 521
AvaII GGWCC 2 cut(s) 366, 553
AxyI CCTNAGG 1 cut(s) 384
BarI GAAGNNNNNNTAC 2 cut(s) 459, 491
BbsI GAAGAC 1 cut(s) 783
BbvI GCAGC 4 cut(s) 118, 841, 844, 936
BccI CCATC 1 cut(s) 159
BcgI CGANNNNNNTGC 2 cut(s) 478, 512
BciT130I CCWGG 2 cut(s) 66, 370
BciVI GTATCC 2 cut(s) 366, 528
BclI TGATCA 1 cut(s) 793
BcnI CCSGG 2 cut(s) 522, 523
BcoDI GTCTC 1 cut(s) 705
BfaI CTAG 2 cut(s) 672, 939
BfuI GTATCC 2 cut(s) 366, 528
BisI GCNGC 4 cut(s) 132, 855, 858, 950
BlsI GCNGC 4 cut(s) 133, 856, 859, 951
Bme1390I CCNGG 4 cut(s) 66, 370, 522, 523
Bme18I GGWCC 2 cut(s) 366, 553
BmeT110I CYCGRG 1 cut(s) 521
BmgT120I GGNCC 3 cut(s) 88, 366, 553
BmiI GGNNCC 1 cut(s) 555
BmrFI CCNGG 4 cut(s) 66, 370, 522, 523
BpiI GAAGAC 1 cut(s) 783
BpmI CTGGAG 2 cut(s) 326, 564
Bpu14I TTCGAA 1 cut(s) 430
BpuEI CTTGAG 1 cut(s) 210
BpuMI CCSGG 2 cut(s) 522, 523
BsaBI GATNNNNATC 2 cut(s) 417, 516
BsaJI CCNNGG 1 cut(s) 521
BsaXI ACNNNNNCTCC 2 cut(s) 324, 354
Bsc4I CCNNNNNNNGG 1 cut(s) 694
Bse1I ACTGG 4 cut(s) 141, 343, 646, 917
Bse21I CCTNAGG 1 cut(s) 384
Bse3DI GCAATG 3 cut(s) 37, 533, 939
Bse8I GATNNNNATC 2 cut(s) 417, 516
BseBI CCWGG 2 cut(s) 66, 370
BseDI CCNNGG 1 cut(s) 521
BseGI GGATG 2 cut(s) 20, 720
BseJI GATNNNNATC 2 cut(s) 417, 516
BseLI CCNNNNNNNGG 1 cut(s) 694
BseMI GCAATG 3 cut(s) 37, 533, 939
BseMII CTCAG 2 cut(s) 92, 915
BseNI ACTGG 4 cut(s) 141, 343, 646, 917
BseXI GCAGC 4 cut(s) 118, 841, 844, 936
BseYI CCCAGC 1 cut(s) 90
BsgI GTGCAG 2 cut(s) 117, 666
Bsh1236I CGCG 2 cut(s) 336, 839
Bsh1285I CGRYCG 1 cut(s) 688
BshFI GGCC 1 cut(s) 89
BsiEI CGRYCG 1 cut(s) 688
BsiHKCI CYCGRG 1 cut(s) 521
BsiSI CCGG 1 cut(s) 522
BslFI GGGAC 1 cut(s) 514
BslI CCNNNNNNNGG 1 cut(s) 694
BsmAI GTCTC 1 cut(s) 705
BsmFI GGGAC 1 cut(s) 514
BsnI GGCC 1 cut(s) 89
BsoBI CYCGRG 1 cut(s) 521
Bsp119I TTCGAA 1 cut(s) 430
Bsp143I GATC 6 cut(s) 61, 379, 412, 717, 793, 886
BspACI CCGC 1 cut(s) 37
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 2 cut(s) 91, 916
BspFNI CGCG 2 cut(s) 336, 839
BspHI TCATGA 1 cut(s) 796
BspLI GGNNCC 1 cut(s) 555
BspPI GGATC 3 cut(s) 56, 374, 407
BspT104I TTCGAA 1 cut(s) 430
BsrDI GCAATG 3 cut(s) 37, 533, 939
BsrI ACTGG 4 cut(s) 141, 343, 646, 917
BssECI CCNNGG 1 cut(s) 521
BssMI GATC 6 cut(s) 61, 379, 412, 717, 793, 886
Bst2UI CCWGG 2 cut(s) 66, 370
Bst4CI ACNGT 3 cut(s) 234, 689, 791
Bst6I CTCTTC 2 cut(s) 52, 873
BstBI TTCGAA 1 cut(s) 430
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 3 cut(s) 78, 384, 924
BstF5I GGATG 2 cut(s) 20, 720
BstFNI CGCG 2 cut(s) 336, 839
BstHHI GCGC 2 cut(s) 292, 338
BstKTI GATC 6 cut(s) 64, 382, 415, 720, 796, 889
BstMAI GTCTC 1 cut(s) 705
BstMBI GATC 6 cut(s) 61, 379, 412, 717, 793, 886
BstMCI CGRYCG 1 cut(s) 688
BstMWI GCNNNNNNNGC 7 cut(s) 27, 36, 91, 289, 653, 929, 955
BstNI CCWGG 2 cut(s) 66, 370
BstNSI RCATGY 1 cut(s) 476
BstSCI CCNGG 4 cut(s) 64, 368, 520, 521
BstUI CGCG 2 cut(s) 336, 839
BstV1I GCAGC 4 cut(s) 118, 841, 844, 936
BstV2I GAAGAC 1 cut(s) 783
BstX2I RGATCY 1 cut(s) 61
BstYI RGATCY 1 cut(s) 61
Bsu36I CCTNAGG 1 cut(s) 384
BsuI GTATCC 2 cut(s) 366, 528
BsuRI GGCC 1 cut(s) 89
BtsCI GGATG 2 cut(s) 20, 720
BtsI GCAGTG 1 cut(s) 738
BtsIMutI CAGTG 3 cut(s) 134, 738, 796
Cac8I GCNNGC 1 cut(s) 87
CaiI CAGNNNCTG 1 cut(s) 349
CciI TCATGA 1 cut(s) 796
CfoI GCGC 2 cut(s) 292, 338
Cfr13I GGNCC 3 cut(s) 88, 366, 553
Cfr9I CCCGGG 1 cut(s) 521
CseI GACGC 1 cut(s) 845
Csp6I GTAC 3 cut(s) 172, 476, 841
CviAII CATG 7 cut(s) 326, 377, 460, 473, 629, 738, 797
CviQI GTAC 3 cut(s) 172, 476, 841
DdeI CTNAG 3 cut(s) 78, 384, 924
DpnI GATC 6 cut(s) 63, 381, 414, 719, 795, 888
DpnII GATC 6 cut(s) 61, 379, 412, 717, 793, 886
DraIII CACNNNGTG 1 cut(s) 733
Eam1104I CTCTTC 2 cut(s) 52, 873
EarI CTCTTC 2 cut(s) 52, 873
Eco32I GATATC 1 cut(s) 358
Eco47I GGWCC 2 cut(s) 366, 553
Eco57I CTGAAG 2 cut(s) 228, 314
Eco81I CCTNAGG 1 cut(s) 384
Eco88I CYCGRG 1 cut(s) 521
EcoRII CCWGG 2 cut(s) 64, 368
EcoRV GATATC 1 cut(s) 358
FaeI CATG 7 cut(s) 329, 380, 463, 476, 632, 741, 800
FaqI GGGAC 1 cut(s) 514
FatI CATG 7 cut(s) 325, 376, 459, 472, 628, 737, 796
FbaI TGATCA 1 cut(s) 793
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 4 cut(s) 132, 855, 858, 950
FokI GGATG 2 cut(s) 27, 707
Fsp4HI GCNGC 4 cut(s) 132, 855, 858, 950
FspBI CTAG 2 cut(s) 672, 939
GlaI GCGC 2 cut(s) 291, 337
GluI GCNGC 4 cut(s) 132, 855, 858, 950
GsaI CCCAGC 1 cut(s) 94
GsuI CTGGAG 2 cut(s) 326, 564
HaeIII GGCC 1 cut(s) 89
HapII CCGG 1 cut(s) 522
HgaI GACGC 1 cut(s) 845
HhaI GCGC 2 cut(s) 292, 338
Hin1II CATG 7 cut(s) 329, 380, 463, 476, 632, 741, 800
Hin6I GCGC 2 cut(s) 290, 336
HinP1I GCGC 2 cut(s) 290, 336
HincII GTYRAC 1 cut(s) 945
HindII GTYRAC 1 cut(s) 945
HinfI GANTC 3 cut(s) 47, 390, 577
HpaI GTTAAC 1 cut(s) 945
HpaII CCGG 1 cut(s) 522
Hpy166II GTNNAC 2 cut(s) 142, 945
Hpy188I TCNGA 4 cut(s) 52, 81, 215, 351
Hpy188III TCNNGA 7 cut(s) 44, 227, 442, 499, 667, 710, 797
Hpy8I GTNNAC 2 cut(s) 142, 945
Hpy99I CGWCG 1 cut(s) 785
HpyCH4III ACNGT 3 cut(s) 234, 689, 791
HpyCH4V TGCA 2 cut(s) 134, 647
HpyF10VI GCNNNNNNNGC 7 cut(s) 27, 36, 91, 289, 653, 929, 955
HpyF3I CTNAG 3 cut(s) 78, 384, 924
Hsp92II CATG 7 cut(s) 329, 380, 463, 476, 632, 741, 800
HspAI GCGC 2 cut(s) 290, 336
Ksp22I TGATCA 1 cut(s) 793
KspAI GTTAAC 1 cut(s) 945
Kzo9I GATC 6 cut(s) 61, 379, 412, 717, 793, 886
LmnI GCTCC 1 cut(s) 486
Lsp1109I GCAGC 4 cut(s) 118, 841, 844, 936
MaeI CTAG 2 cut(s) 672, 939
MaeIII GTNAC 1 cut(s) 908
MalI GATC 6 cut(s) 63, 381, 414, 719, 795, 888
MboI GATC 6 cut(s) 61, 379, 412, 717, 793, 886
MboII GAAGA 9 cut(s) 69, 121, 251, 307, 479, 788, 842, 890, 896
MflI RGATCY 1 cut(s) 61
MluCI AATT 3 cut(s) 113, 401, 705
MluI ACGCGT 1 cut(s) 837
MlyI GAGTC 1 cut(s) 571
MmeI TCCRAC 2 cut(s) 84, 193
MnlI CCTC 3 cut(s) 177, 735, 874
MroXI GAANNNNTTC 1 cut(s) 116
MseI TTAA 4 cut(s) 195, 701, 750, 944
MspA1I CMGCKG 1 cut(s) 584
MspI CCGG 1 cut(s) 522
MspR9I CCNGG 4 cut(s) 66, 370, 522, 523
MvaI CCWGG 2 cut(s) 66, 370
MvnI CGCG 2 cut(s) 336, 839
MwoI GCNNNNNNNGC 7 cut(s) 27, 36, 91, 289, 653, 929, 955
NciI CCSGG 2 cut(s) 522, 523
NdeII GATC 6 cut(s) 61, 379, 412, 717, 793, 886
NlaIII CATG 7 cut(s) 329, 380, 463, 476, 632, 741, 800
NlaIV GGNNCC 1 cut(s) 555
NmuCI GTSAC 1 cut(s) 908
NspI RCATGY 1 cut(s) 476
NspV TTCGAA 1 cut(s) 430
PagI TCATGA 1 cut(s) 796
PciI ACATGT 1 cut(s) 472
PdmI GAANNNNTTC 1 cut(s) 116
PfeI GAWTC 2 cut(s) 47, 390
PfoI TCCNGGA 1 cut(s) 368
PkrI GCNGC 4 cut(s) 133, 856, 859, 951
PleI GAGTC 1 cut(s) 571
PpsI GAGTC 1 cut(s) 571
PscI ACATGT 1 cut(s) 472
PsiI TTATAA 1 cut(s) 864
Psp6I CCWGG 2 cut(s) 64, 368
PspFI CCCAGC 1 cut(s) 90
PspGI CCWGG 2 cut(s) 64, 368
PspN4I GGNNCC 1 cut(s) 555
PspPI GGNCC 3 cut(s) 88, 366, 553
PstNI CAGNNNCTG 1 cut(s) 349
PsuI RGATCY 1 cut(s) 61
PvuII CAGCTG 1 cut(s) 584
RsaI GTAC 3 cut(s) 173, 477, 842
RsaNI GTAC 3 cut(s) 172, 476, 841
SaqAI TTAA 4 cut(s) 195, 701, 750, 944
SatI GCNGC 4 cut(s) 132, 855, 858, 950
Sau3AI GATC 6 cut(s) 61, 379, 412, 717, 793, 886
Sau96I GGNCC 3 cut(s) 88, 366, 553
SchI GAGTC 1 cut(s) 571
ScrFI CCNGG 4 cut(s) 66, 370, 522, 523
SetI ASST 7 cut(s) 133, 159, 169, 586, 602, 765, 944
SfuI TTCGAA 1 cut(s) 430
SinI GGWCC 2 cut(s) 366, 553
SmaI CCCGGG 1 cut(s) 523
SmlI CTYRAG 1 cut(s) 225
SmoI CTYRAG 1 cut(s) 225
Sse9I AATT 3 cut(s) 113, 401, 705
SsiI CCGC 1 cut(s) 37
SspMI CTAG 2 cut(s) 672, 939
StyD4I CCNGG 4 cut(s) 64, 368, 520, 521
TaaI ACNGT 3 cut(s) 234, 689, 791
TaqI TCGA 3 cut(s) 45, 430, 709
TasI AATT 3 cut(s) 113, 401, 705
TfiI GAWTC 2 cut(s) 47, 390
Tru1I TTAA 4 cut(s) 195, 701, 750, 944
Tru9I TTAA 4 cut(s) 195, 701, 750, 944
TscAI CASTG 3 cut(s) 141, 738, 796
TseFI GTSAC 1 cut(s) 908
TseI GCWGC 4 cut(s) 131, 854, 857, 949
Tsp45I GTSAC 1 cut(s) 908
TspDTI ATGAA 2 cut(s) 335, 843
TspGWI ACGGA 3 cut(s) 427, 518, 566
TspMI CCCGGG 1 cut(s) 521
TspRI CASTG 3 cut(s) 141, 738, 796
VpaK11BI GGWCC 2 cut(s) 366, 553
XapI RAATTY 2 cut(s) 113, 401
XceI RCATGY 1 cut(s) 476
XmaI CCCGGG 1 cut(s) 521
XmiI GTMKAC 1 cut(s) 141
XmnI GAANNNNTTC 1 cut(s) 116
XspI CTAG 2 cut(s) 672, 939
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.