Rorug05G0362500

Disease resistance protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
48023729 .. 48024328
600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0362500.1

Sequence Viewer

Length: 450 bp
ATGGAACAAGATAGAGAGAAGATTTTGGCTGAAGAACGAGCAATATGTGAGGAGAGGTTTAAGAGGTTAAAAGCAAAGCTTGACAGGAAGGTTGTGGAAAAAGATTTGCCCAAAATTTCCACCATTGACAAGCAAGTCGGTTATGGACAAGGAAGTTGTCCACATTTGCATGAGAAGGGTGCCAAGGCAAATGAAAATCTTGTTCATAGCATTGTTAGAAAATGTTTGGAGTTAGAACAACCTAAGGAGCTTCTAAAATATGTGAATCCCACTGATGGTGTGGACTTGAATTCTACTAAGAAGCAGGATGGTTCAAATTGTGCCATAGTTGATCTAGAAATCGAGAAGGCTGAATTTCAGGCACAGACAAGTGGGACAGAATGCCAATTGGCTTCGGGTTCAATTAATAATGTTGTAGCTATTGCAACGATTATAGAAGTCAATGCTTAG

Protein Analysis

149

Amino Acids

16.55

Weight (kDa)

5.7

Isoelectric Point (pI)

30.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000381)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 134
AccB1I GGYRCC 1 cut(s) 179
AcsI RAATTY 3 cut(s) 114, 289, 353
AcuI CTGAAG 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 275
AgsI TTSAA 3 cut(s) 289, 315, 402
AluBI AGCT 3 cut(s) 79, 250, 419
AluI AGCT 3 cut(s) 79, 250, 419
ApoI RAATTY 3 cut(s) 114, 289, 353
AseI ATTAAT 1 cut(s) 405
AxyI CCTNAGG 1 cut(s) 243
BanI GGYRCC 1 cut(s) 179
BccI CCATC 2 cut(s) 269, 302
BfaI CTAG 1 cut(s) 335
BmiI GGNNCC 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 183
Bsc4I CCNNNNNNNGG 1 cut(s) 275
Bse21I CCTNAGG 1 cut(s) 243
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 1 cut(s) 313
BseLI CCNNNNNNNGG 1 cut(s) 275
BseRI GAGGAG 1 cut(s) 65
BshNI GGYRCC 1 cut(s) 179
BslFI GGGAC 1 cut(s) 388
BslI CCNNNNNNNGG 1 cut(s) 275
BsmFI GGGAC 1 cut(s) 388
BsmI GAATGC 1 cut(s) 386
Bsp143I GATC 1 cut(s) 331
BspLI GGNNCC 1 cut(s) 181
BspT107I GGYRCC 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 1 cut(s) 331
BssT1I CCWWGG 1 cut(s) 183
BstDEI CTNAG 3 cut(s) 243, 297, 447
BstF5I GGATG 1 cut(s) 313
BstKTI GATC 1 cut(s) 334
BstMBI GATC 1 cut(s) 331
Bsu36I CCTNAGG 1 cut(s) 243
BtsCI GGATG 1 cut(s) 313
BtsIMutI CAGTG 1 cut(s) 270
CviAII CATG 1 cut(s) 170
CviJI RGCY 6 cut(s) 29, 79, 250, 350, 392, 419
CviKI_1 RGCY 6 cut(s) 29, 79, 250, 350, 392, 419
DdeI CTNAG 3 cut(s) 243, 297, 447
DpnI GATC 1 cut(s) 333
DpnII GATC 1 cut(s) 331
DrdI GACNNNNNNGTC 1 cut(s) 134
DseDI GACNNNNNNGTC 1 cut(s) 134
Eco130I CCWWGG 1 cut(s) 183
Eco57I CTGAAG 1 cut(s) 51
Eco81I CCTNAGG 1 cut(s) 243
EcoRI GAATTC 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 1 cut(s) 173
FaiI YATR 7 cut(s) 46, 144, 171, 207, 261, 326, 434
FalI AAGNNNNNCTT 2 cut(s) 63, 95
FaqI GGGAC 1 cut(s) 388
FatI CATG 1 cut(s) 169
FokI GGATG 1 cut(s) 320
FspBI CTAG 1 cut(s) 335
Hin1II CATG 1 cut(s) 173
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 1 cut(s) 265
Hpy166II GTNNAC 2 cut(s) 161, 283
Hpy188III TCNNGA 2 cut(s) 335, 343
Hpy8I GTNNAC 2 cut(s) 161, 283
HpyAV CCTTC 3 cut(s) 82, 169, 340
HpyCH4V TGCA 2 cut(s) 169, 425
HpyF3I CTNAG 3 cut(s) 243, 297, 447
Hsp92II CATG 1 cut(s) 173
Kzo9I GATC 1 cut(s) 331
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 3 cut(s) 70, 290, 344
MaeI CTAG 1 cut(s) 335
MalI GATC 1 cut(s) 333
MboI GATC 1 cut(s) 331
MboII GAAGA 2 cut(s) 31, 44
MfeI CAATTG 1 cut(s) 386
MluCI AATT 6 cut(s) 114, 289, 316, 353, 386, 402
MnlI CCTC 3 cut(s) 43, 48, 57
MseI TTAA 3 cut(s) 60, 68, 405
MslI CAYNNNNRTG 1 cut(s) 168
MunI CAATTG 1 cut(s) 386
Mva1269I GAATGC 1 cut(s) 386
NdeII GATC 1 cut(s) 331
NlaIII CATG 1 cut(s) 173
NlaIV GGNNCC 1 cut(s) 181
PctI GAATGC 1 cut(s) 386
PfeI GAWTC 1 cut(s) 265
PshBI ATTAAT 1 cut(s) 405
PspN4I GGNNCC 1 cut(s) 181
RseI CAYNNNNRTG 1 cut(s) 168
SaqAI TTAA 3 cut(s) 60, 68, 405
Sau3AI GATC 1 cut(s) 331
SetI ASST 7 cut(s) 59, 68, 81, 93, 244, 252, 421
SmiMI CAYNNNNRTG 1 cut(s) 168
Sse9I AATT 6 cut(s) 114, 289, 316, 353, 386, 402
SspMI CTAG 1 cut(s) 335
StyI CCWWGG 1 cut(s) 183
TaqI TCGA 1 cut(s) 342
TasI AATT 6 cut(s) 114, 289, 316, 353, 386, 402
TfiI GAWTC 1 cut(s) 265
Tru1I TTAA 3 cut(s) 60, 68, 405
Tru9I TTAA 3 cut(s) 60, 68, 405
TscAI CASTG 1 cut(s) 277
TspDTI ATGAA 2 cut(s) 194, 207
TspRI CASTG 1 cut(s) 277
VspI ATTAAT 1 cut(s) 405
XapI RAATTY 3 cut(s) 114, 289, 353
XbaI TCTAGA 1 cut(s) 334
XcmI CCANNNNNNNNNTGG 1 cut(s) 277
XspI CTAG 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.