Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Reverse (-)

58524876 .. 58526296

Gene Structure 1421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G035480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTGTACTGGAACAGATTTCAGGCGTGATGAAGGGGCTCTGAAGTACCTCAAGGATATCAAGTGGTATAGGATAGATGAACCGAAAGGATTCAAGCTTGAGTTTTTCTTCAATGCCAATCCTTATTTCAAAAATTCTGTCCTGACAAAAACGTATCACATGATTGATGACGATGAACCTATTTTGGAGAAGGCAATTGGGACGGAGATTGAATGGTATCCTGGGAAAAGCTTGACACAGAAGATCTTGAAGAAGAAGCCAAGAAAGGGATCAAAAAATTCTAAACCCATAACCAAAACTGAAGATTGTGAAAGCTTCTTTAACTTCTTCAACCCTCCTGAGATCCCTGATACTGATGATGGATTTGATGAGGAAGCTGCTGAAGAACTTCAAGGTCAGATGGAGCAGGATTATGACATTGGTTCAACAATAAGAGACAAAATCATTCCCCATGCGGTGTCATGGTTTACTGGGGAGGCTGTTAAGGATGAATTTGAAGATATAGAAGATGATGATGATGATGTAGATGAGAATGAAGACGAAGACGAGGACGAAGATGAAGATGAAGATGAAGAAGACGATGAGGATGATGATGATGATGATGATGAGGAAGAGAAAGGAAGGAAAAAGGTATTTGTATTCTATCTAGTCTATATTCATTTTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

222

Amino Acids

26.16

Weight (kDa)

4.13

Isoelectric Point (pI)

36.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	8 - 159	2.1e-56	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	455
AclWI	GGATC	2 cut(s)	277, 337
AcsI	RAATTY	3 cut(s)	133, 277, 491
AcuI	CTGAAG	3 cut(s)	62, 321, 402
AfaI	GTAC	2 cut(s)	7, 47
AfiI	CCNNNNNNNGG	1 cut(s)	266
AgsI	TTSAA	9 cut(s)	94, 112, 130, 212, 250, 331, 392, 426, 497
AjnI	CCWGG	1 cut(s)	220
AjuI	GAANNNNNNNTTGG	2 cut(s)	110, 142
AluBI	AGCT	4 cut(s)	97, 231, 315, 377
AluI	AGCT	4 cut(s)	97, 231, 315, 377
Alw26I	GTCTC	1 cut(s)	429
AlwI	GGATC	2 cut(s)	277, 337
ApeKI	GCWGC	1 cut(s)	377
ApoI	RAATTY	3 cut(s)	133, 277, 491
ArsI	GACNNNNNNTTYG	2 cut(s)	123, 155
Asp700I	GAANNNNTTC	2 cut(s)	89, 387
BanII	GRGCYC	1 cut(s)	40
BbsI	GAAGAC	3 cut(s)	543, 549, 582
BbvI	GCAGC	1 cut(s)	364
BccI	CCATC	2 cut(s)	353, 394
BciT130I	CCWGG	1 cut(s)	222
BciVI	GTATCC	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	429
BfaI	CTAG	1 cut(s)	647
BfuI	GTATCC	1 cut(s)	228
BglII	AGATCT	1 cut(s)	243
BisI	GCNGC	1 cut(s)	378
BlsI	GCNGC	1 cut(s)	379
Bme1390I	CCNGG	1 cut(s)	222
BmrFI	CCNGG	1 cut(s)	222
BmrI	ACTGGG	1 cut(s)	480
BmuI	ACTGGG	1 cut(s)	480
BpiI	GAAGAC	3 cut(s)	543, 549, 582
BpuEI	CTTGAG	2 cut(s)	35, 119
BsaJI	CCNNGG	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
Bse1I	ACTGG	2 cut(s)	13, 475
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	221
BseGI	GGATG	2 cut(s)	493, 592
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMII	CTCAG	1 cut(s)	330
BseNI	ACTGG	2 cut(s)	13, 475
BseXI	GCAGC	1 cut(s)	364
BslFI	GGGAC	1 cut(s)	214
BslI	CCNNNNNNNGG	1 cut(s)	266
BsmAI	GTCTC	1 cut(s)	429
BsmFI	GGGAC	1 cut(s)	214
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp143I	GATC	3 cut(s)	243, 269, 342
BspACI	CCGC	1 cut(s)	455
BspCNI	CTCAG	1 cut(s)	331
BspPI	GGATC	2 cut(s)	277, 337
BsrI	ACTGG	2 cut(s)	13, 475
BssECI	CCNNGG	1 cut(s)	221
BssMI	GATC	3 cut(s)	243, 269, 342
Bst2UI	CCWGG	1 cut(s)	222
Bst6I	CTCTTC	1 cut(s)	606
BstDEI	CTNAG	1 cut(s)	339
BstF5I	GGATG	2 cut(s)	493, 592
BstKTI	GATC	3 cut(s)	246, 272, 345
BstMAI	GTCTC	1 cut(s)	429
BstMBI	GATC	3 cut(s)	243, 269, 342
BstNI	CCWGG	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	220
BstV1I	GCAGC	1 cut(s)	364
BstV2I	GAAGAC	3 cut(s)	543, 549, 582
BstX2I	RGATCY	2 cut(s)	243, 342
BstYI	RGATCY	2 cut(s)	243, 342
BsuI	GTATCC	1 cut(s)	228
BtsCI	GGATG	2 cut(s)	493, 592
Csp6I	GTAC	2 cut(s)	6, 46
CviAII	CATG	3 cut(s)	160, 452, 462
CviJI	RGCY	7 cut(s)	38, 97, 231, 259, 315, 377, 479
CviKI_1	RGCY	7 cut(s)	38, 97, 231, 259, 315, 377, 479
CviQI	GTAC	2 cut(s)	6, 46
DdeI	CTNAG	1 cut(s)	339
DpnI	GATC	3 cut(s)	245, 271, 344
DpnII	GATC	3 cut(s)	243, 269, 342
Eam1104I	CTCTTC	1 cut(s)	606
EarI	CTCTTC	1 cut(s)	606
Eco24I	GRGCYC	1 cut(s)	40
Eco32I	GATATC	1 cut(s)	58
Eco57I	CTGAAG	3 cut(s)	62, 321, 402
EcoRII	CCWGG	1 cut(s)	220
EcoRV	GATATC	1 cut(s)	58
EcoT38I	GRGCYC	1 cut(s)	40
FaeI	CATG	3 cut(s)	163, 455, 465
FaiI	YATR	9 cut(s)	69, 161, 290, 414, 453, 463, 503, 654, 667
FaqI	GGGAC	1 cut(s)	214
FatI	CATG	3 cut(s)	159, 451, 461
Fnu4HI	GCNGC	1 cut(s)	378
FokI	GGATG	2 cut(s)	500, 599
FriOI	GRGCYC	1 cut(s)	40
Fsp4HI	GCNGC	1 cut(s)	378
FspBI	CTAG	1 cut(s)	647
GluI	GCNGC	1 cut(s)	378
Hin1II	CATG	3 cut(s)	163, 455, 465
HindIII	AAGCTT	3 cut(s)	95, 229, 313
HinfI	GANTC	1 cut(s)	90
Hpy166II	GTNNAC	2 cut(s)	6, 468
Hpy188I	TCNGA	2 cut(s)	42, 399
Hpy188III	TCNNGA	3 cut(s)	142, 247, 338
Hpy8I	GTNNAC	2 cut(s)	6, 468
HpyAV	CCTTC	3 cut(s)	26, 184, 615
HpyCH4IV	ACGT	1 cut(s)	152
HpyF3I	CTNAG	1 cut(s)	339
HpySE526I	ACGT	1 cut(s)	152
Hsp92II	CATG	3 cut(s)	163, 455, 465
Kzo9I	GATC	3 cut(s)	243, 269, 342
LmnI	GCTCC	1 cut(s)	403
LpnPI	CCDG	8 cut(s)	7, 155, 207, 234, 351, 360, 392, 456
Lsp1109I	GCAGC	1 cut(s)	364
MaeI	CTAG	1 cut(s)	647
MaeII	ACGT	1 cut(s)	152
MalI	GATC	3 cut(s)	245, 271, 344
MboI	GATC	3 cut(s)	243, 269, 342
MfeI	CAATTG	1 cut(s)	195
MflI	RGATCY	2 cut(s)	243, 342
MhlI	GDGCHC	1 cut(s)	40
MluCI	AATT	4 cut(s)	133, 195, 277, 491
MnlI	CCTC	7 cut(s)	59, 345, 364, 469, 541, 577, 601
MroXI	GAANNNNTTC	2 cut(s)	89, 387
MseI	TTAA	2 cut(s)	321, 483
MspR9I	CCNGG	1 cut(s)	222
MunI	CAATTG	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	222
NdeII	GATC	3 cut(s)	243, 269, 342
NlaIII	CATG	3 cut(s)	163, 455, 465
PdmI	GAANNNNTTC	2 cut(s)	89, 387
PfeI	GAWTC	1 cut(s)	90
PkrI	GCNGC	1 cut(s)	379
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PsuI	RGATCY	2 cut(s)	243, 342
RsaI	GTAC	2 cut(s)	7, 47
RsaNI	GTAC	2 cut(s)	6, 46
SaqAI	TTAA	2 cut(s)	321, 483
SatI	GCNGC	1 cut(s)	378
Sau3AI	GATC	3 cut(s)	243, 269, 342
ScrFI	CCNGG	1 cut(s)	222
SduI	GDGCHC	1 cut(s)	40
SetI	ASST	9 cut(s)	51, 99, 155, 181, 233, 317, 379, 397, 633
SmlI	CTYRAG	2 cut(s)	50, 98
SmoI	CTYRAG	2 cut(s)	50, 98
Sse9I	AATT	4 cut(s)	133, 195, 277, 491
SsiI	CCGC	1 cut(s)	455
SspMI	CTAG	1 cut(s)	647
StyD4I	CCNGG	1 cut(s)	220
TaiI	ACGT	1 cut(s)	155
TasI	AATT	4 cut(s)	133, 195, 277, 491
TatI	WGTACW	1 cut(s)	5
TfiI	GAWTC	1 cut(s)	90
Tru1I	TTAA	2 cut(s)	321, 483
Tru9I	TTAA	2 cut(s)	321, 483
TseI	GCWGC	1 cut(s)	377
TspDTI	ATGAA	9 cut(s)	45, 93, 189, 504, 549, 573, 579, 585, 647
TspGWI	ACGGA	1 cut(s)	218
XapI	RAATTY	3 cut(s)	133, 277, 491
XmnI	GAANNNNTTC	2 cut(s)	89, 387
XspI	CTAG	1 cut(s)	647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.