Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Reverse (-)

64670237 .. 64673073

Gene Structure 2837 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG435700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGAGTTCCTCTGGATCTGGCTTCAATGGCTCCGACCACAACCTCAATTCCGAGGGAAGAGATCCTGGTCTTACTGCTCAGAAGCAGATTAAGTCTCGGATTACACCCAAGATAGTGAAGCGCGTTCATGTTTTGAGACAGATAGAGGGGCAGCATAAGAAGCTGGAACAACAATTTTTTGAGGACAGAGCTGCACTGGTAGATAAATACCATCAGCTTTACAAACCTCTCTACGAAAAGAGATATGAGATTGTTAATGGTATCACTGAAGTGGAAGGAGTGAAAACTCCAGACCAAGGACAAGAAGCCACAGAAGAGAAAGGAGTACCTAACTTTTGGCTGTCCGCACTGAAGAATAATAAGGAACTTCTGTTCAGAATTGGGATTCTTTGTAGGACGGAGATTGATTGGTATCCCGGGCAAAGCTTGACAATCAGTCCAAGAAAAGACCCAAAGAATGCCAAGTCCATGACTGCAGCTGATATTTGTTACAGCTTCTTTACGTTCTTCAAACCTCCCCAACATGATGATTATACCGGGGCAGATATGGTTTCTATGTTCAAGACTAGGATAGAAAACGACCGTGAAATGGGGTACGAATTAAGTAGCTGGACTAATGCTGAGAGAGCAATGGCTGGGCTAACGCTGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0033554 GO:0034641 GO:0042221 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

217

Amino Acids

24.83

Weight (kDa)

7.74

Isoelectric Point (pI)

35.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	40 - 122	7.1e-19	Nucleosome assembly protein (NAP)
NAP	PF00956	133 - 201	3e-06	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	123
AciI	CCGC	1 cut(s)	345
AclWI	GGATC	2 cut(s)	22, 56
AcuI	CTGAAG	2 cut(s)	288, 371
AfaI	GTAC	2 cut(s)	327, 596
AfiI	CCNNNNNNNGG	2 cut(s)	296, 589
AgsI	TTSAA	3 cut(s)	25, 511, 562
AhdI	GACNNNNNGTC	1 cut(s)	435
AjnI	CCWGG	1 cut(s)	64
AleI	CACNNNNGTG	1 cut(s)	269
AloI	GAACNNNNNNTCC	2 cut(s)	356, 388
AluBI	AGCT	7 cut(s)	163, 191, 217, 426, 479, 495, 609
AluI	AGCT	7 cut(s)	163, 191, 217, 426, 479, 495, 609
Alw26I	GTCTC	2 cut(s)	99, 130
AlwI	GGATC	2 cut(s)	22, 56
Ama87I	CYCGRG	1 cut(s)	416
ApeKI	GCWGC	4 cut(s)	151, 191, 476, 646
AspLEI	GCGC	1 cut(s)	123
AsuC2I	CCSGG	3 cut(s)	417, 418, 538
AvaI	CYCGRG	1 cut(s)	416
BbvI	GCAGC	4 cut(s)	163, 178, 488, 633
BccI	CCATC	1 cut(s)	219
BciT130I	CCWGG	1 cut(s)	66
BciVI	GTATCC	1 cut(s)	423
BcnI	CCSGG	3 cut(s)	417, 418, 538
BcoDI	GTCTC	2 cut(s)	99, 130
BfaI	CTAG	1 cut(s)	567
BfmI	CTRYAG	1 cut(s)	474
BfuI	GTATCC	1 cut(s)	423
BisI	GCNGC	4 cut(s)	152, 192, 477, 647
BlsI	GCNGC	4 cut(s)	153, 193, 478, 648
Bme1390I	CCNGG	4 cut(s)	66, 417, 418, 538
BmeRI	GACNNNNNGTC	1 cut(s)	435
BmeT110I	CYCGRG	1 cut(s)	416
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	4 cut(s)	66, 417, 418, 538
BpmI	CTGGAG	1 cut(s)	273
BpuMI	CCSGG	3 cut(s)	417, 418, 538
BsaBI	GATNNNNATC	1 cut(s)	411
BsaJI	CCNNGG	4 cut(s)	51, 295, 416, 537
Bsc4I	CCNNNNNNNGG	2 cut(s)	296, 589
Bse1I	ACTGG	1 cut(s)	201
Bse3DI	GCAATG	1 cut(s)	636
Bse8I	GATNNNNATC	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	4 cut(s)	51, 295, 416, 537
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	2 cut(s)	296, 589
BseMI	GCAATG	1 cut(s)	636
BseMII	CTCAG	2 cut(s)	92, 612
BseNI	ACTGG	1 cut(s)	201
BseXI	GCAGC	4 cut(s)	163, 178, 488, 633
BseYI	CCCAGC	1 cut(s)	635
BsgI	GTGCAG	1 cut(s)	177
Bsh1236I	CGCG	1 cut(s)	123
Bsh1285I	CGRYCG	1 cut(s)	583
BsiEI	CGRYCG	1 cut(s)	583
BsiHKCI	CYCGRG	1 cut(s)	416
BsiSI	CCGG	2 cut(s)	417, 537
BslI	CCNNNNNNNGG	2 cut(s)	296, 589
BsmAI	GTCTC	2 cut(s)	99, 130
BsmI	GAATGC	1 cut(s)	463
BsoBI	CYCGRG	1 cut(s)	416
Bsp143I	GATC	2 cut(s)	14, 61
BspACI	CCGC	1 cut(s)	345
BspCNI	CTCAG	2 cut(s)	91, 613
BspFNI	CGCG	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	31
BspMAI	CTGCAG	1 cut(s)	478
BspPI	GGATC	2 cut(s)	22, 56
BsrDI	GCAATG	1 cut(s)	636
BsrI	ACTGG	1 cut(s)	201
BssECI	CCNNGG	4 cut(s)	51, 295, 416, 537
BssMI	GATC	2 cut(s)	14, 61
BssT1I	CCWWGG	1 cut(s)	295
Bst2UI	CCWGG	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	584
Bst6I	CTCTTC	2 cut(s)	52, 309
BstDEI	CTNAG	2 cut(s)	78, 621
BstFNI	CGCG	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	2 cut(s)	17, 64
BstMAI	GTCTC	2 cut(s)	99, 130
BstMBI	GATC	2 cut(s)	14, 61
BstMCI	CGRYCG	1 cut(s)	583
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 160, 626, 646
BstNI	CCWGG	1 cut(s)	66
BstSCI	CCNGG	4 cut(s)	64, 415, 416, 536
BstSFI	CTRYAG	1 cut(s)	474
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	4 cut(s)	163, 178, 488, 633
BstX2I	RGATCY	2 cut(s)	14, 61
BstYI	RGATCY	2 cut(s)	14, 61
BsuI	GTATCC	1 cut(s)	423
BtsIMutI	CAGTG	3 cut(s)	194, 264, 347
CfoI	GCGC	1 cut(s)	123
Cfr9I	CCCGGG	1 cut(s)	416
Csp6I	GTAC	2 cut(s)	326, 595
CviAII	CATG	3 cut(s)	128, 469, 524
CviQI	GTAC	2 cut(s)	326, 595
DdeI	CTNAG	2 cut(s)	78, 621
DpnI	GATC	2 cut(s)	16, 63
DpnII	GATC	2 cut(s)	14, 61
DriI	GACNNNNNGTC	1 cut(s)	435
Eam1104I	CTCTTC	2 cut(s)	52, 309
Eam1105I	GACNNNNNGTC	1 cut(s)	435
EarI	CTCTTC	2 cut(s)	52, 309
Eco130I	CCWWGG	1 cut(s)	295
Eco57I	CTGAAG	2 cut(s)	288, 371
Eco88I	CYCGRG	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	64
EcoT14I	CCWWGG	1 cut(s)	295
ErhI	CCWWGG	1 cut(s)	295
FaeI	CATG	3 cut(s)	131, 472, 527
FaiI	YATR	8 cut(s)	129, 156, 246, 470, 525, 534, 548, 557
FatI	CATG	3 cut(s)	127, 468, 523
Fnu4HI	GCNGC	4 cut(s)	152, 192, 477, 647
Fsp4HI	GCNGC	4 cut(s)	152, 192, 477, 647
FspBI	CTAG	1 cut(s)	567
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	4 cut(s)	152, 192, 477, 647
GsaI	CCCAGC	1 cut(s)	639
GsuI	CTGGAG	1 cut(s)	273
HapII	CCGG	2 cut(s)	417, 537
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	3 cut(s)	131, 472, 527
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	424
HinfI	GANTC	1 cut(s)	385
HpaII	CCGG	2 cut(s)	417, 537
Hpy188I	TCNGA	5 cut(s)	34, 52, 81, 99, 377
Hpy188III	TCNNGA	3 cut(s)	12, 290, 562
HpyAV	CCTTC	1 cut(s)	269
HpyCH4III	ACNGT	1 cut(s)	584
HpyCH4IV	ACGT	1 cut(s)	503
HpyCH4V	TGCA	3 cut(s)	194, 476, 649
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 160, 626, 646
HpyF3I	CTNAG	2 cut(s)	78, 621
HpySE526I	ACGT	1 cut(s)	503
Hsp92II	CATG	3 cut(s)	131, 472, 527
HspAI	GCGC	1 cut(s)	121
Kzo9I	GATC	2 cut(s)	14, 61
LmnI	GCTCC	1 cut(s)	35
Lsp1109I	GCAGC	4 cut(s)	163, 178, 488, 633
MaeI	CTAG	1 cut(s)	567
MaeII	ACGT	1 cut(s)	503
MaeIII	GTNAC	1 cut(s)	488
MalI	GATC	2 cut(s)	16, 63
MboI	GATC	2 cut(s)	14, 61
MboII	GAAGA	4 cut(s)	69, 326, 364, 499
MflI	RGATCY	2 cut(s)	14, 61
MluCI	AATT	4 cut(s)	46, 173, 378, 599
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	7 cut(s)	19, 46, 53, 139, 175, 237, 525
MseI	TTAA	3 cut(s)	90, 255, 602
MslI	CAYNNNNRTG	1 cut(s)	269
MspA1I	CMGCKG	1 cut(s)	479
MspI	CCGG	2 cut(s)	417, 537
MspR9I	CCNGG	4 cut(s)	66, 417, 418, 538
Mva1269I	GAATGC	1 cut(s)	463
MvaI	CCWGG	1 cut(s)	66
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	4 cut(s)	27, 160, 626, 646
NciI	CCSGG	3 cut(s)	417, 418, 538
NdeII	GATC	2 cut(s)	14, 61
NlaIII	CATG	3 cut(s)	131, 472, 527
NlaIV	GGNNCC	1 cut(s)	31
OliI	CACNNNNGTG	1 cut(s)	269
PctI	GAATGC	1 cut(s)	463
PfeI	GAWTC	1 cut(s)	385
PkrI	GCNGC	4 cut(s)	153, 193, 478, 648
Psp6I	CCWGG	1 cut(s)	64
PspFI	CCCAGC	1 cut(s)	635
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	1 cut(s)	31
PstI	CTGCAG	1 cut(s)	478
PsuI	RGATCY	2 cut(s)	14, 61
PvuII	CAGCTG	1 cut(s)	479
RsaI	GTAC	2 cut(s)	327, 596
RsaNI	GTAC	2 cut(s)	326, 595
RseI	CAYNNNNRTG	1 cut(s)	269
SaqAI	TTAA	3 cut(s)	90, 255, 602
SatI	GCNGC	4 cut(s)	152, 192, 477, 647
Sau3AI	GATC	2 cut(s)	14, 61
ScrFI	CCNGG	4 cut(s)	66, 417, 418, 538
SfcI	CTRYAG	1 cut(s)	474
SmaI	CCCGGG	1 cut(s)	418
SmiMI	CAYNNNNRTG	1 cut(s)	269
Sse9I	AATT	4 cut(s)	46, 173, 378, 599
SsiI	CCGC	1 cut(s)	345
SspMI	CTAG	1 cut(s)	567
StyD4I	CCNGG	4 cut(s)	64, 415, 416, 536
StyI	CCWWGG	1 cut(s)	295
TaaI	ACNGT	1 cut(s)	584
TaiI	ACGT	1 cut(s)	506
TasI	AATT	4 cut(s)	46, 173, 378, 599
TfiI	GAWTC	1 cut(s)	385
Tru1I	TTAA	3 cut(s)	90, 255, 602
Tru9I	TTAA	3 cut(s)	90, 255, 602
TscAI	CASTG	3 cut(s)	201, 271, 354
TseI	GCWGC	4 cut(s)	151, 191, 476, 646
TspDTI	ATGAA	1 cut(s)	116
TspGWI	ACGGA	1 cut(s)	413
TspMI	CCCGGG	1 cut(s)	416
TspRI	CASTG	3 cut(s)	201, 271, 354
XmaI	CCCGGG	1 cut(s)	416
XspI	CTAG	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.