Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000381

Physical Location & Seq

Genomic Coordinates Reverse (-)

16773492 .. 16776985

Gene Structure 3494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1209100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGAGCAGCGACAAGGATAACATCAACATGTCCGATCTCTCCTCTGGTGCTCTCAACGACGTGGATCGAGCCGGCCTCGTCAATGCTCTCAAAAATAAGATAGAGAGTCTGGCCGGGCAGCACTCTGATATCCTCGAGAGCCTATCGCCTGTTGTCAGAAAGCGCGTAGATGTTCTTAGAGAGATCCAGACCCAACATGATGAACTTGAGGCAAAGTTTTTCGAGGAGAGAGCAGCTCTCGAAGCCAAGTATCAGAAATTGTATCAACCTTTGTATACCAAGAGATATGAGATCGTAAATGGTGTTGTTGAAGCTGAAGGCGTTACAAATGAAGCAGCAACAGATGAAGAGGGTAAAGATTCCGAAGAAAAAGGAGTGCCTGATTTCTGGCTCAATGCAATGAAAAACAACGAAGTGCTAGCTGAGGAGATATCTGAGCGTGATGAAGGTGCTCTTAAATATCTTAGAGACATCAAGTGGTTTAGGATAGATAACCCTAAGGGATTCAAACTGGAGTTCTACTTTGACACCAATCCCTTTTTTAAGAACTCTGTCTTGACAAAGACTTACCACATGATTGATGAAGATGAACCCATTCTCGAGAAAGCAATAGGGACCGAGATTGAATGGTATCCTGCTAAATGCTTGACACAGAAGCTTCTTAAGAAGAAGCCTAAGAAGGGATCTAAGAATGCTAAGCCAATAACTAGAACTGAAAATTGCGAAAGTTTCTTCAACTTTTTCAGTCCACCTCAAGTCCCTGAGGATGACGAAGATATTGATGAAGATGCTGCTGAGGAACTCCAAAACCAGATGGAACAAGATTATGACATTGGGTCTACCATTCGAGATAAGATCATCCCTCATGCTGTTTCATGGTTTACTGGAGAGGCTATTGAGGGAGAAGATTTTGGTGACTTGGAAGACGAAGATGAAGACGACGAAGAGGAAGATGACGAAGAGGAAGAAGATGAGGACGAAGAAGACGAGGAGGATGAAGACGATGAAGATGAAGGCAAAACCAAAAAGAAGACATCGGCCAGTCACAAGAAGAACGCAAGAGCACAAGTCGGGGAGCAGGGTGAGCGGCCTCCAGAATGCAAACAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

371

Amino Acids

42.49

Weight (kDa)

4.35

Isoelectric Point (pI)

51.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	54 - 297	2e-88	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19480 AT2G19480 AT2G19480 AT4G26110 AT4G26110 AT5G56950
fragaria_vesca	FvH4_1g07740 FvH4_1g07740 FvH4_4g08240 FvH4_5g31310 FvH4_6g00310 FvH4_6g00310 FvH4_6g24290 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33640 FvH4_6g33650 FvH4_6g33710 FvH4_6g47360
malus_domestica	MD02G1081800.v1.1 MD09G1192000.v1.1 MD15G1209100.v1.1
prunus_persica	Prupe.3G048200_v2.0.a1 Prupe.3G048200_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1 Prupe.7G207300_v2.0.a1
pyrus_communis	pycom02g06460 pycom09g10850 pycom15g18540
rosa_chinensis	RchiOBHm_Chr2g0093631 RchiOBHm_Chr2g0143531 RchiOBHm_Chr2g0143541 RchiOBHm_Chr2g0143561 RchiOBHm_Chr3g0453681 RchiOBHm_Chr3g0453701 RchiOBHm_Chr5g0064061
rosa_laevigata	RLG00000015834 RLG00000016422 RLG00000020045 RLG00000020046 RLG00000035700
rosa_multiflora	Rmu_co8360287.1_g000001 Rmu_sc0002126.1_g000019 Rmu_sc0003547.1_g000009 Rmu_sc0003556.1_g000007 Rmu_sc0003556.1_g000008 Rmu_sc0026989.1_g000002 Rmu_ssc0000231.1_g000007 Rmu_ssc0000239.1_g000004
rosa_roxburghii	Rroxscaffold_1G00016760 Rroxscaffold_1G00016790 Rroxscaffold_2G00101660 Rroxscaffold_2G00101720 Rroxscaffold_2G00101740 Rroxscaffold_6G00430600 Rroxscaffold_6G00430620
rosa_rugosa	Rorug02G0038100 Rorug02G0383200 Rorug02G0383300 Rorug02G0383400 Rorug02G0383500 Rorug02G0383800 Rorug02G0651100 Rorug02G0651200 Rorug05G0362500
rosa_samantha	Rh1BG414000 Rh2AG084600 Rh2AG435400 Rh2AG435500 Rh2AG435700 Rh2AG588700 Rh2BG085200 Rh2BG443000 Rh2BG443100 Rh2BG443200 Rh2BG443300 Rh2CG087500 Rh2CG421500 Rh2CG421600 Rh2CG421800 Rh2DG083200 Rh2DG453500 Rh2DG453600 Rh2DG453700 Rh2DG611000 Rh5AG420500 Rh5AG421100 Rh5BG436400 Rh5CG459100 Rh5CG459300 Rh5DG449900
rosa_wichuraiana	Rw2G007100 Rw2G035480 Rw2G035490 Rw2G035500 Rw3G004120 Rw3G004130 Rw5G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1087
AccI	GTMKAC	2 cut(s)	275, 839
AccII	CGCG	1 cut(s)	165
AciI	CCGC	1 cut(s)	1087
AclWI	GGATC	3 cut(s)	72, 178, 691
AcoI	YGGCCR	2 cut(s)	111, 1038
AcuI	CTGAAG	1 cut(s)	336
AfiI	CCNNNNNNNGG	1 cut(s)	680
AflII	CTTAAG	1 cut(s)	662
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	4 cut(s)	311, 508, 626, 736
AhdI	GACNNNNNGTC	1 cut(s)	835
AjiI	CACGTC	1 cut(s)	61
AluBI	AGCT	4 cut(s)	236, 314, 422, 658
AluI	AGCT	4 cut(s)	236, 314, 422, 658
Alw21I	GWGCWC	3 cut(s)	52, 454, 1066
Alw26I	GTCTC	1 cut(s)	462
AlwI	GGATC	3 cut(s)	72, 178, 691
Ama87I	CYCGRG	2 cut(s)	134, 599
AoxI	GGCC	4 cut(s)	73, 111, 1038, 1088
ApeKI	GCWGC	5 cut(s)	6, 118, 233, 335, 791
Asp700I	GAANNNNTTC	1 cut(s)	594
AspLEI	GCGC	1 cut(s)	165
AspS9I	GGNCC	1 cut(s)	615
AsuC2I	CCSGG	1 cut(s)	115
AsuHPI	GGTGA	2 cut(s)	926, 1094
AsuNHI	GCTAGC	1 cut(s)	418
AvaI	CYCGRG	2 cut(s)	134, 599
AvaII	GGWCC	1 cut(s)	615
AxyI	CCTNAGG	2 cut(s)	498, 762
BbsI	GAAGAC	5 cut(s)	930, 942, 990, 1005, 1037
Bbv12I	GWGCWC	3 cut(s)	52, 454, 1066
BbvCI	CCTCAGC	2 cut(s)	423, 795
BbvI	GCAGC	5 cut(s)	18, 130, 245, 347, 778
BccI	CCATC	1 cut(s)	808
BciVI	GTATCC	1 cut(s)	642
BcnI	CCSGG	1 cut(s)	115
BcoDI	GTCTC	1 cut(s)	462
BfaI	CTAG	2 cut(s)	419, 708
BfrI	CTTAAG	1 cut(s)	662
BfuI	GTATCC	1 cut(s)	642
BisI	GCNGC	6 cut(s)	7, 119, 234, 336, 792, 1088
BlpI	GCTNAGC	1 cut(s)	696
BlsI	GCNGC	6 cut(s)	8, 120, 235, 337, 793, 1089
Bme1390I	CCNGG	1 cut(s)	115
Bme18I	GGWCC	1 cut(s)	615
BmeRI	GACNNNNNGTC	1 cut(s)	835
BmeT110I	CYCGRG	2 cut(s)	134, 599
BmgBI	CACGTC	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	615
BmiI	GGNNCC	1 cut(s)	616
BmrFI	CCNGG	1 cut(s)	115
BmsI	GCATC	1 cut(s)	778
BmtI	GCTAGC	1 cut(s)	422
BpiI	GAAGAC	5 cut(s)	930, 942, 990, 1005, 1037
BplI	GAGNNNNNCTC	6 cut(s)	60, 92, 220, 252, 222, 254
BpmI	CTGGAG	3 cut(s)	533, 906, 1077
Bpu10I	CCTNAGC	2 cut(s)	423, 795
Bpu1102I	GCTNAGC	1 cut(s)	696
BpuEI	CTTGAG	2 cut(s)	227, 738
BpuMI	CCSGG	1 cut(s)	115
Bsc4I	CCNNNNNNNGG	1 cut(s)	680
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	3 cut(s)	516, 889, 1041
Bse21I	CCTNAGG	2 cut(s)	498, 762
Bse3DI	GCAATG	1 cut(s)	405
BseGI	GGATG	3 cut(s)	772, 858, 1000
BseLI	CCNNNNNNNGG	1 cut(s)	680
BseMI	GCAATG	1 cut(s)	405
BseMII	CTCAG	4 cut(s)	414, 426, 753, 786
BseNI	ACTGG	3 cut(s)	516, 889, 1041
BseRI	GAGGAG	4 cut(s)	31, 239, 440, 1004
BseXI	GCAGC	5 cut(s)	18, 130, 245, 347, 778
Bsh1236I	CGCG	1 cut(s)	165
BshFI	GGCC	4 cut(s)	75, 113, 1040, 1090
BsiHKAI	GWGCWC	3 cut(s)	52, 454, 1066
BsiHKCI	CYCGRG	2 cut(s)	134, 599
BsiSI	CCGG	2 cut(s)	72, 114
BslFI	GGGAC	2 cut(s)	628, 743
BslI	CCNNNNNNNGG	1 cut(s)	680
BsmAI	GTCTC	1 cut(s)	462
BsmFI	GGGAC	2 cut(s)	628, 743
BsmI	GAATGC	2 cut(s)	697, 1103
BsnI	GGCC	4 cut(s)	75, 113, 1040, 1090
BsoBI	CYCGRG	2 cut(s)	134, 599
Bsp1286I	GDGCHC	3 cut(s)	52, 454, 1066
Bsp143I	GATC	6 cut(s)	34, 64, 183, 291, 683, 855
Bsp1720I	GCTNAGC	1 cut(s)	696
BspACI	CCGC	1 cut(s)	1087
BspANI	GGCC	4 cut(s)	75, 113, 1040, 1090
BspCNI	CTCAG	4 cut(s)	415, 427, 754, 787
BspFNI	CGCG	1 cut(s)	165
BspLI	GGNNCC	1 cut(s)	616
BspOI	GCTAGC	1 cut(s)	422
BspPI	GGATC	3 cut(s)	72, 178, 691
BspTI	CTTAAG	1 cut(s)	662
BsrBI	CCGCTC	1 cut(s)	1087
BsrDI	GCAATG	1 cut(s)	405
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	3 cut(s)	516, 889, 1041
BssAI	RCCGGY	1 cut(s)	71
BssMI	GATC	6 cut(s)	34, 64, 183, 291, 683, 855
BssNAI	GTATAC	1 cut(s)	276
Bst1107I	GTATAC	1 cut(s)	276
Bst6I	CTCTTC	3 cut(s)	342, 939, 954
BstAFI	CTTAAG	1 cut(s)	662
BstC8I	GCNNGC	2 cut(s)	73, 420
BstF5I	GGATG	3 cut(s)	772, 858, 1000
BstFNI	CGCG	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	165
BstKTI	GATC	6 cut(s)	37, 67, 186, 294, 686, 858
BstMAI	GTCTC	1 cut(s)	462
BstMBI	GATC	6 cut(s)	34, 64, 183, 291, 683, 855
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 1084
BstNSI	RCATGY	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	113
BstUI	CGCG	1 cut(s)	165
BstV1I	GCAGC	5 cut(s)	18, 130, 245, 347, 778
BstV2I	GAAGAC	5 cut(s)	930, 942, 990, 1005, 1037
BstX2I	RGATCY	2 cut(s)	183, 683
BstYI	RGATCY	2 cut(s)	183, 683
BstZ17I	GTATAC	1 cut(s)	276
Bsu36I	CCTNAGG	2 cut(s)	498, 762
BsuI	GTATCC	1 cut(s)	642
BsuRI	GGCC	4 cut(s)	75, 113, 1040, 1090
BtrI	CACGTC	1 cut(s)	61
BtsCI	GGATG	3 cut(s)	772, 858, 1000
Cac8I	GCNNGC	2 cut(s)	73, 420
CfoI	GCGC	1 cut(s)	165
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	615
CviAII	CATG	5 cut(s)	28, 197, 574, 866, 876
DpnI	GATC	6 cut(s)	36, 66, 185, 293, 685, 857
DpnII	GATC	6 cut(s)	34, 64, 183, 291, 683, 855
DriI	GACNNNNNGTC	1 cut(s)	835
EaeI	YGGCCR	2 cut(s)	111, 1038
Eam1104I	CTCTTC	3 cut(s)	342, 939, 954
Eam1105I	GACNNNNNGTC	1 cut(s)	835
EarI	CTCTTC	3 cut(s)	342, 939, 954
Eco32I	GATATC	2 cut(s)	130, 432
Eco47I	GGWCC	1 cut(s)	615
Eco57I	CTGAAG	1 cut(s)	336
Eco81I	CCTNAGG	2 cut(s)	498, 762
Eco88I	CYCGRG	2 cut(s)	134, 599
EcoRV	GATATC	2 cut(s)	130, 432
FaeI	CATG	5 cut(s)	31, 200, 577, 869, 879
FaiI	YATR	8 cut(s)	29, 198, 276, 288, 575, 828, 867, 877
FalI	AAGNNNNNCTT	2 cut(s)	438, 470
FaqI	GGGAC	2 cut(s)	628, 743
FatI	CATG	5 cut(s)	27, 196, 573, 865, 875
FblI	GTMKAC	2 cut(s)	275, 839
Fnu4HI	GCNGC	6 cut(s)	7, 119, 234, 336, 792, 1088
FokI	GGATG	3 cut(s)	779, 845, 1007
Fsp4HI	GCNGC	6 cut(s)	7, 119, 234, 336, 792, 1088
FspBI	CTAG	2 cut(s)	419, 708
GlaI	GCGC	1 cut(s)	164
GluI	GCNGC	6 cut(s)	7, 119, 234, 336, 792, 1088
GsuI	CTGGAG	3 cut(s)	533, 906, 1077
HaeIII	GGCC	4 cut(s)	75, 113, 1040, 1090
HapII	CCGG	2 cut(s)	72, 114
HhaI	GCGC	1 cut(s)	165
Hin1II	CATG	5 cut(s)	31, 200, 577, 869, 879
Hin6I	GCGC	1 cut(s)	163
HinP1I	GCGC	1 cut(s)	163
HindIII	AAGCTT	1 cut(s)	656
HinfI	GANTC	3 cut(s)	106, 359, 504
HpaII	CCGG	2 cut(s)	72, 114
HphI	GGTGA	2 cut(s)	926, 1094
Hpy166II	GTNNAC	4 cut(s)	276, 749, 840, 882
Hpy188I	TCNGA	6 cut(s)	34, 127, 158, 255, 364, 436
Hpy188III	TCNNGA	8 cut(s)	136, 187, 239, 556, 599, 601, 848, 1094
Hpy8I	GTNNAC	4 cut(s)	276, 749, 840, 882
Hpy99I	CGWCG	2 cut(s)	62, 944
HpyAV	CCTTC	4 cut(s)	311, 440, 673, 1007
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	2 cut(s)	398, 1101
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 1084
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	5 cut(s)	31, 200, 577, 869, 879
HspAI	GCGC	1 cut(s)	163
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
Kzo9I	GATC	6 cut(s)	34, 64, 183, 291, 683, 855
LmnI	GCTCC	1 cut(s)	1075
Lsp1109I	GCAGC	5 cut(s)	18, 130, 245, 347, 778
LweI	GCATC	1 cut(s)	778
MaeI	CTAG	2 cut(s)	419, 708
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	3 cut(s)	322, 914, 1043
MalI	GATC	6 cut(s)	36, 66, 185, 293, 685, 857
MbiI	CCGCTC	1 cut(s)	1087
MboI	GATC	6 cut(s)	34, 64, 183, 291, 683, 855
MflI	RGATCY	2 cut(s)	183, 683
MhlI	GDGCHC	3 cut(s)	52, 454, 1066
MluCI	AATT	2 cut(s)	257, 718
MlyI	GAGTC	1 cut(s)	115
MroNI	GCCGGC	1 cut(s)	71
MroXI	GAANNNNTTC	1 cut(s)	594
MseI	TTAA	3 cut(s)	456, 543, 663
MslI	CAYNNNNRTG	1 cut(s)	26
MspCI	CTTAAG	1 cut(s)	662
MspI	CCGG	2 cut(s)	72, 114
MspR9I	CCNGG	1 cut(s)	115
Mva1269I	GAATGC	2 cut(s)	697, 1103
MvnI	CGCG	1 cut(s)	165
MwoI	GCNNNNNNNGC	2 cut(s)	242, 1084
NaeI	GCCGGC	1 cut(s)	73
NciI	CCSGG	1 cut(s)	115
NdeII	GATC	6 cut(s)	34, 64, 183, 291, 683, 855
NgoMIV	GCCGGC	1 cut(s)	71
NheI	GCTAGC	1 cut(s)	418
NlaIII	CATG	5 cut(s)	31, 200, 577, 869, 879
NlaIV	GGNNCC	1 cut(s)	616
NmuCI	GTSAC	2 cut(s)	914, 1043
NspI	RCATGY	1 cut(s)	31
PaeR7I	CTCGAG	2 cut(s)	134, 599
PciI	ACATGT	1 cut(s)	27
PcsI	WCGNNNNNNNCGW	1 cut(s)	984
PctI	GAATGC	2 cut(s)	697, 1103
PdiI	GCCGGC	1 cut(s)	73
PdmI	GAANNNNTTC	1 cut(s)	594
PfeI	GAWTC	2 cut(s)	359, 504
PkrI	GCNGC	6 cut(s)	8, 120, 235, 337, 793, 1089
PleI	GAGTC	1 cut(s)	114
PpsI	GAGTC	1 cut(s)	114
PscI	ACATGT	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	616
PspPI	GGNCC	1 cut(s)	615
PsuI	RGATCY	2 cut(s)	183, 683
RseI	CAYNNNNRTG	1 cut(s)	26
SaqAI	TTAA	3 cut(s)	456, 543, 663
SatI	GCNGC	6 cut(s)	7, 119, 234, 336, 792, 1088
Sau3AI	GATC	6 cut(s)	34, 64, 183, 291, 683, 855
Sau96I	GGNCC	1 cut(s)	615
SchI	GAGTC	1 cut(s)	115
ScrFI	CCNGG	1 cut(s)	115
SduI	GDGCHC	3 cut(s)	52, 454, 1066
SetI	ASST	8 cut(s)	63, 238, 271, 316, 424, 451, 660, 754
SfaNI	GCATC	1 cut(s)	778
Sfr274I	CTCGAG	2 cut(s)	134, 599
SinI	GGWCC	1 cut(s)	615
SlaI	CTCGAG	2 cut(s)	134, 599
SmiMI	CAYNNNNRTG	1 cut(s)	26
SmlI	CTYRAG	5 cut(s)	134, 206, 599, 662, 753
SmoI	CTYRAG	5 cut(s)	134, 206, 599, 662, 753
Sse9I	AATT	2 cut(s)	257, 718
SsiI	CCGC	1 cut(s)	1087
SspMI	CTAG	2 cut(s)	419, 708
StyD4I	CCNGG	1 cut(s)	113
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	6 cut(s)	67, 135, 222, 240, 600, 847
TaqII	GACCGA	1 cut(s)	632
TasI	AATT	2 cut(s)	257, 718
TauI	GCSGC	1 cut(s)	1090
TfiI	GAWTC	2 cut(s)	359, 504
Tru1I	TTAA	3 cut(s)	456, 543, 663
Tru9I	TTAA	3 cut(s)	456, 543, 663
TseFI	GTSAC	2 cut(s)	914, 1043
TseI	GCWGC	5 cut(s)	6, 118, 233, 335, 791
Tsp45I	GTSAC	2 cut(s)	914, 1043
Vha464I	CTTAAG	1 cut(s)	662
VpaK11BI	GGWCC	1 cut(s)	615
XceI	RCATGY	1 cut(s)	31
XhoI	CTCGAG	2 cut(s)	134, 599
XmiI	GTMKAC	2 cut(s)	275, 839
XmnI	GAANNNNTTC	1 cut(s)	594
XspI	CTAG	2 cut(s)	419, 708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.