Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Forward (+)

21961209 .. 21968979

Gene Structure 7771 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g29202.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCGATAGAGATTGAAGAGCAGATTGATCGAAACAAGTCCAAACCCGGACTTGATCGTATTGACTTGAAGAGATTCGCCTACTTTCTCGGAAAGAGGATTCAGTACGAGGATCGAATGCAAGTCGTAGGATTCCAGAAGCAGAAGGATAAAGATTCCAGAAAACGTGTCGCGGTGTTACTAGTTTTAATTAGCGTCAACGCTTGGATTCCAGTGTCGTTACTCATTGATAGGGCTAGGCACTTAGTACAGGAATCTCGTTCCCGTACCGGTCCTGTCCCGAAAGTTGGCGGGATGGGAAAGTTGGCTGGATGGGACGGGATAGGTTTTGAAAATGACAATCTCGTCCCGTCCCGTCCCGTTATGAAAGGTGGACTGACTCAAGTAACAAGGAGTCCAACTATGAGCAATGATGGGAGAGCAAATGGAACTCGCGTTGGGGTCCTGATAACAAGGAGGCAGAAGGCTATGTTGAAGAGACTCATGACAGATGTACCATTCAGTGTTCTTTTGTCTGGAAGGTTGGACTCATCACTCGTTCCTGCTGTGGCTTCTCGCTATTTGGCTACATCAGAAGCTGCACGTCAGTGGGGATCACAGTTACATACCTTTGGAGATCTGGGGGGGAGTGGTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

213

Amino Acids

23.46

Weight (kDa)

10.4

Isoelectric Point (pI)

53.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asn_synthase	PF00733	155 - 204	4.6e-07	Asparagine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	344
AccII	CGCG	2 cut(s)	173, 435
AciI	CCGC	2 cut(s)	173, 291
AclWI	GGATC	2 cut(s)	120, 601
AfaI	GTAC	4 cut(s)	107, 249, 268, 495
AfiI	CCNNNNNNNGG	1 cut(s)	287
AflIII	ACRYGT	1 cut(s)	166
AgeI	ACCGGT	1 cut(s)	269
AgsI	TTSAA	4 cut(s)	17, 70, 332, 475
AhlI	ACTAGT	1 cut(s)	181
AjiI	CACGTC	1 cut(s)	584
AleI	CACNNNNGTG	1 cut(s)	586
AluBI	AGCT	1 cut(s)	578
AluI	AGCT	1 cut(s)	578
Alw26I	GTCTC	1 cut(s)	472
AlwI	GGATC	2 cut(s)	120, 601
AlwNI	CAGNNNCTG	1 cut(s)	578
ApeKI	GCWGC	1 cut(s)	578
AsiGI	ACCGGT	1 cut(s)	269
Asp700I	GAANNNNTTC	1 cut(s)	74
AspS9I	GGNCC	2 cut(s)	272, 442
AsuC2I	CCSGG	1 cut(s)	48
AvaII	GGWCC	2 cut(s)	272, 442
BaeI	ACNNNNGTAYC	2 cut(s)	477, 510
BbvI	GCAGC	1 cut(s)	565
BccI	CCATC	3 cut(s)	289, 306, 407
BcgI	CGANNNNNNTGC	2 cut(s)	11, 45
BcnI	CCSGG	1 cut(s)	48
BcoDI	GTCTC	1 cut(s)	472
BcuI	ACTAGT	1 cut(s)	181
BfaI	CTAG	2 cut(s)	182, 237
BglII	AGATCT	1 cut(s)	616
BisI	GCNGC	1 cut(s)	579
BlsI	GCNGC	1 cut(s)	580
Bme1390I	CCNGG	1 cut(s)	48
Bme18I	GGWCC	2 cut(s)	272, 442
BmgBI	CACGTC	1 cut(s)	584
BmgT120I	GGNCC	2 cut(s)	272, 442
BmiI	GGNNCC	1 cut(s)	443
BmrFI	CCNGG	1 cut(s)	48
BpuEI	CTTGAG	1 cut(s)	366
BpuMI	CCSGG	1 cut(s)	48
BsaWI	WCCGGW	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
Bse118I	RCCGGY	1 cut(s)	269
Bse1I	ACTGG	1 cut(s)	212
Bse3DI	GCAATG	1 cut(s)	415
BseGI	GGATG	2 cut(s)	300, 317
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseMI	GCAATG	1 cut(s)	415
BseNI	ACTGG	1 cut(s)	212
BseXI	GCAGC	1 cut(s)	565
BsgI	GTGCAG	1 cut(s)	564
Bsh1236I	CGCG	2 cut(s)	173, 435
BshTI	ACCGGT	1 cut(s)	269
BsiSI	CCGG	2 cut(s)	48, 270
BslFI	GGGAC	5 cut(s)	263, 329, 332, 337, 342
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmAI	GTCTC	1 cut(s)	472
BsmFI	GGGAC	5 cut(s)	263, 329, 332, 337, 342
BsmI	GAATGC	1 cut(s)	123
Bsp143I	GATC	5 cut(s)	28, 55, 112, 593, 616
BspACI	CCGC	2 cut(s)	173, 291
BspFNI	CGCG	2 cut(s)	173, 435
BspHI	TCATGA	1 cut(s)	483
BspLI	GGNNCC	1 cut(s)	443
BspPI	GGATC	2 cut(s)	120, 601
BspQI	GCTCTTC	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	415
BsrFI	RCCGGY	1 cut(s)	269
BsrI	ACTGG	1 cut(s)	212
BssAI	RCCGGY	1 cut(s)	269
BssMI	GATC	5 cut(s)	28, 55, 112, 593, 616
Bst4CI	ACNGT	1 cut(s)	600
Bst6I	CTCTTC	3 cut(s)	12, 65, 470
BstDEI	CTNAG	1 cut(s)	244
BstF5I	GGATG	2 cut(s)	300, 317
BstFNI	CGCG	2 cut(s)	173, 435
BstKTI	GATC	5 cut(s)	31, 58, 115, 596, 619
BstMAI	GTCTC	1 cut(s)	472
BstMBI	GATC	5 cut(s)	28, 55, 112, 593, 616
BstSCI	CCNGG	1 cut(s)	46
BstUI	CGCG	2 cut(s)	173, 435
BstV1I	GCAGC	1 cut(s)	565
BstX2I	RGATCY	1 cut(s)	616
BstYI	RGATCY	1 cut(s)	616
BtrI	CACGTC	1 cut(s)	584
BtsCI	GGATG	2 cut(s)	300, 317
BtsIMutI	CAGTG	3 cut(s)	219, 508, 593
CaiI	CAGNNNCTG	1 cut(s)	578
CciI	TCATGA	1 cut(s)	483
Cfr10I	RCCGGY	1 cut(s)	269
Cfr13I	GGNCC	2 cut(s)	272, 442
CseI	GACGC	1 cut(s)	184
Csp6I	GTAC	4 cut(s)	106, 248, 267, 494
CspAI	ACCGGT	1 cut(s)	269
CviAII	CATG	1 cut(s)	484
CviJI	RGCY	6 cut(s)	236, 308, 467, 551, 566, 578
CviKI_1	RGCY	6 cut(s)	236, 308, 467, 551, 566, 578
CviQI	GTAC	4 cut(s)	106, 248, 267, 494
DdeI	CTNAG	1 cut(s)	244
DpnI	GATC	5 cut(s)	30, 57, 114, 595, 618
DpnII	GATC	5 cut(s)	28, 55, 112, 593, 616
DrdI	GACNNNNNNGTC	1 cut(s)	344
DseDI	GACNNNNNNGTC	1 cut(s)	344
Eam1104I	CTCTTC	3 cut(s)	12, 65, 470
EarI	CTCTTC	3 cut(s)	12, 65, 470
Eco47I	GGWCC	2 cut(s)	272, 442
EcoO109I	RGGNCCY	1 cut(s)	442
FaeI	CATG	1 cut(s)	487
FaiI	YATR	5 cut(s)	365, 404, 470, 485, 606
FaqI	GGGAC	5 cut(s)	263, 329, 332, 337, 342
FatI	CATG	1 cut(s)	483
FauI	CCCGC	1 cut(s)	284
Fnu4HI	GCNGC	1 cut(s)	579
FokI	GGATG	2 cut(s)	307, 324
Fsp4HI	GCNGC	1 cut(s)	579
FspBI	CTAG	2 cut(s)	182, 237
GluI	GCNGC	1 cut(s)	579
HapII	CCGG	2 cut(s)	48, 270
HgaI	GACGC	1 cut(s)	184
Hin1II	CATG	1 cut(s)	487
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HpaII	CCGG	2 cut(s)	48, 270
Hpy166II	GTNNAC	2 cut(s)	199, 374
Hpy188I	TCNGA	2 cut(s)	92, 574
Hpy188III	TCNNGA	6 cut(s)	136, 159, 280, 445, 484, 516
Hpy8I	GTNNAC	2 cut(s)	199, 374
HpyAV	CCTTC	3 cut(s)	139, 457, 513
HpyCH4III	ACNGT	1 cut(s)	600
HpyCH4IV	ACGT	2 cut(s)	166, 583
HpyCH4V	TGCA	2 cut(s)	121, 581
HpyF3I	CTNAG	1 cut(s)	244
HpySE526I	ACGT	2 cut(s)	166, 583
Hsp92II	CATG	1 cut(s)	487
Kzo9I	GATC	5 cut(s)	28, 55, 112, 593, 616
LguI	GCTCTTC	1 cut(s)	12
Lsp1109I	GCAGC	1 cut(s)	565
MaeI	CTAG	2 cut(s)	182, 237
MaeII	ACGT	2 cut(s)	166, 583
MaeIII	GTNAC	5 cut(s)	177, 219, 385, 600, 632
MalI	GATC	5 cut(s)	30, 57, 114, 595, 618
MboI	GATC	5 cut(s)	28, 55, 112, 593, 616
MboII	GAAGA	3 cut(s)	29, 82, 487
MflI	RGATCY	1 cut(s)	616
MluCI	AATT	1 cut(s)	189
MlyI	GAGTC	4 cut(s)	373, 403, 474, 521
MmeI	TCCRAC	2 cut(s)	422, 504
MnlI	CCTC	3 cut(s)	90, 103, 450
MroXI	GAANNNNTTC	1 cut(s)	74
MseI	TTAA	1 cut(s)	188
MslI	CAYNNNNRTG	1 cut(s)	586
MspI	CCGG	2 cut(s)	48, 270
MspR9I	CCNGG	1 cut(s)	48
Mva1269I	GAATGC	1 cut(s)	123
MvnI	CGCG	2 cut(s)	173, 435
NciI	CCSGG	1 cut(s)	48
NdeII	GATC	5 cut(s)	28, 55, 112, 593, 616
NlaIII	CATG	1 cut(s)	487
NlaIV	GGNNCC	1 cut(s)	443
NmuCI	GTSAC	1 cut(s)	632
OliI	CACNNNNGTG	1 cut(s)	586
PagI	TCATGA	1 cut(s)	483
PciSI	GCTCTTC	1 cut(s)	12
PctI	GAATGC	1 cut(s)	123
PdmI	GAANNNNTTC	1 cut(s)	74
PfeI	GAWTC	6 cut(s)	75, 100, 132, 155, 208, 254
PinAI	ACCGGT	1 cut(s)	269
PkrI	GCNGC	1 cut(s)	580
PleI	GAGTC	4 cut(s)	373, 402, 474, 521
PpsI	GAGTC	4 cut(s)	373, 402, 474, 521
PpuMI	RGGWCCY	1 cut(s)	442
Psp5II	RGGWCCY	1 cut(s)	442
PspN4I	GGNNCC	1 cut(s)	443
PspPI	GGNCC	2 cut(s)	272, 442
PspPPI	RGGWCCY	1 cut(s)	442
PstNI	CAGNNNCTG	1 cut(s)	578
PsuI	RGATCY	1 cut(s)	616
RsaI	GTAC	4 cut(s)	107, 249, 268, 495
RsaNI	GTAC	4 cut(s)	106, 248, 267, 494
RseI	CAYNNNNRTG	1 cut(s)	586
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	188
SatI	GCNGC	1 cut(s)	579
Sau3AI	GATC	5 cut(s)	28, 55, 112, 593, 616
Sau96I	GGNCC	2 cut(s)	272, 442
SchI	GAGTC	4 cut(s)	373, 403, 474, 521
ScrFI	CCNGG	1 cut(s)	48
SetI	ASST	7 cut(s)	169, 328, 373, 524, 580, 586, 611
SinI	GGWCC	2 cut(s)	272, 442
SmiMI	CAYNNNNRTG	1 cut(s)	586
SmlI	CTYRAG	1 cut(s)	381
SmoI	CTYRAG	1 cut(s)	381
SpeI	ACTAGT	1 cut(s)	181
Sse9I	AATT	1 cut(s)	189
SsiI	CCGC	2 cut(s)	173, 291
SspMI	CTAG	2 cut(s)	182, 237
StyD4I	CCNGG	1 cut(s)	46
TaaI	ACNGT	1 cut(s)	600
TaiI	ACGT	2 cut(s)	169, 586
TaqI	TCGA	2 cut(s)	31, 115
TasI	AATT	1 cut(s)	189
TatI	WGTACW	1 cut(s)	247
TfiI	GAWTC	6 cut(s)	75, 100, 132, 155, 208, 254
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
TscAI	CASTG	3 cut(s)	219, 508, 593
TseFI	GTSAC	1 cut(s)	632
TseI	GCWGC	1 cut(s)	578
Tsp45I	GTSAC	1 cut(s)	632
TspDTI	ATGAA	1 cut(s)	380
TspRI	CASTG	3 cut(s)	219, 508, 593
VpaK11BI	GGWCC	2 cut(s)	272, 442
XmnI	GAANNNNTTC	1 cut(s)	74
XspI	CTAG	2 cut(s)	182, 237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.