Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00653

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Forward (+)

15530 .. 19615

Gene Structure 4086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G014630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGTGTGCAGGAGGGCTGAGAAGGTGGTACAATCCAGAATGGTTTTTGGAGAAGATACCATCATCTCCTTATGATCCCATTGTTTTACGCGAGGCTTTTGAGAAGGCTGTGTTAAAGAGACTTATGACAGATGTACCATTCGGTGTTCTTTTGTCCAGAGGATTGGACTCGTCACTTGTTGCTGCTGTGACTTGTTGCTATTTGGCTAAATCAGAAGCTGCACGTCAGTGGGGGTCACAATTACATACCTTTTGCGTTGGCTTAGAGGGTTCTCCAGATTTAAAAGCAGCAAGAGAAGTTGCTGATTATCTTGGAACTCATCATCACGGAAATAATTTCTATTTTTGCTTCATATCTCAGGAAGGCATAGATGCACTTGAAGAAGTTATCTACCATATTGAGACATATGATGTGACCACTGTCAGAGCCAGCACTCCAATGTTTCTTATGTCTCGTAAGATAAAATCTCTGGGAGTAAAAATGGTCCTTTCTGGTGAAGGTTCAGATGAAATCTTTGGTGGCTACTTGTATTTCCACAAGGCACCAAACAAGGAGGAGTTTCACCAAGAAACATGCCAGAAGATTAAAGCTCTTCACCTGTACGACTGTCTGAGGGCCAACAAATCAACTTCAGCTTGGGGTGTTGAGGCTCAAGTACCGTTTCTTGACAAAGAATTCATCAAGACTGCTATGGACATTGATCCAGAATGGAAAATGATCAGGCCTGATCTTGGGAGAATTGAGAAGTGGGTCTTGCGCAAAGCATTTGATGATGATCAGAAGCCATATTTACCAAAGGTGCAGAAGGAGCAGTTTAGTGATGGTGTCGGTTACCGCTGGATTGACGGCTTGAAAGATCATGCCAACAAACAAAGATGCAGCACAGCAAAAGCTGTGGAGAGGGACGCGGAATGGTCCAAGAACCCTGATCCATCTGGTCGTGCTGCACTTGGTGTACATGCAGCTGCGTATGAGGAATCCAAAGATGTGAAGACTGGAAGTCTTGTGAGTGACTCTCCACAGAAACTTGTAAAAGGGGTTGCAGAGAAAGTGGCTGCAGTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

355

Amino Acids

39.92

Weight (kDa)

6.57

Isoelectric Point (pI)

41.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asn_synthase	PF00733	29 - 184	1.1e-43	Asparagine synthase
Asn_synthase	PF00733	182 - 295	2.2e-21	Asparagine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	758
AccB1I	GGYRCC	1 cut(s)	541
AccII	CGCG	2 cut(s)	90, 908
AciI	CCGC	2 cut(s)	835, 908
AclWI	GGATC	3 cut(s)	68, 695, 923
AcsI	RAATTY	1 cut(s)	674
AcuI	CTGAAG	1 cut(s)	615
AdeI	CACNNNGTG	1 cut(s)	953
AfaI	GTAC	5 cut(s)	29, 135, 602, 657, 957
AfiI	CCNNNNNNNGG	1 cut(s)	731
AgsI	TTSAA	2 cut(s)	380, 853
AhdI	GACNNNNNGTC	1 cut(s)	999
AjiI	CACGTC	1 cut(s)	224
AleI	CACNNNNGTG	1 cut(s)	226
AluBI	AGCT	5 cut(s)	218, 590, 635, 893, 965
AluI	AGCT	5 cut(s)	218, 590, 635, 893, 965
Alw26I	GTCTC	3 cut(s)	112, 395, 456
AlwI	GGATC	3 cut(s)	68, 695, 923
AlwNI	CAGNNNCTG	1 cut(s)	218
AoxI	GGCC	2 cut(s)	615, 722
ApeKI	GCWGC	8 cut(s)	182, 218, 287, 879, 944, 962, 965, 1055
ApoI	RAATTY	1 cut(s)	674
AspLEI	GCGC	1 cut(s)	759
AspS9I	GGNCC	3 cut(s)	484, 615, 915
AsuHPI	GGTGA	3 cut(s)	506, 554, 587
AvaII	GGWCC	2 cut(s)	484, 915
BaeI	ACNNNNGTAYC	2 cut(s)	117, 150
BanI	GGYRCC	1 cut(s)	541
BbsI	GAAGAC	1 cut(s)	998
BbvI	GCAGC	8 cut(s)	169, 205, 299, 891, 931, 952, 974, 1042
BccI	CCATC	3 cut(s)	67, 815, 940
BceAI	ACGGC	1 cut(s)	862
BclI	TGATCA	2 cut(s)	717, 775
BcoDI	GTCTC	3 cut(s)	112, 395, 456
BfmI	CTRYAG	1 cut(s)	1056
BisI	GCNGC	8 cut(s)	183, 219, 288, 880, 945, 963, 966, 1056
BlsI	GCNGC	8 cut(s)	184, 220, 289, 881, 946, 964, 967, 1057
Bme18I	GGWCC	2 cut(s)	484, 915
BmeRI	GACNNNNNGTC	1 cut(s)	999
BmgBI	CACGTC	1 cut(s)	224
BmgT120I	GGNCC	3 cut(s)	484, 615, 915
BmiI	GGNNCC	1 cut(s)	543
BmsI	GCATC	2 cut(s)	361, 866
BoxI	GACNNNNGTC	1 cut(s)	419
BpiI	GAAGAC	1 cut(s)	998
BplI	GAGNNNNNCTC	2 cut(s)	1000, 1032
BpmI	CTGGAG	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	636
BsaBI	GATNNNNATC	1 cut(s)	774
Bsc4I	CCNNNNNNNGG	1 cut(s)	731
Bse1I	ACTGG	1 cut(s)	1000
Bse8I	GATNNNNATC	1 cut(s)	774
BseJI	GATNNNNATC	1 cut(s)	774
BseLI	CCNNNNNNNGG	1 cut(s)	731
BseMII	CTCAG	3 cut(s)	8, 371, 602
BseNI	ACTGG	1 cut(s)	1000
BseRI	GAGGAG	1 cut(s)	569
BseXI	GCAGC	8 cut(s)	169, 205, 299, 891, 931, 952, 974, 1042
BsgI	GTGCAG	4 cut(s)	27, 204, 821, 930
Bsh1236I	CGCG	2 cut(s)	90, 908
BshFI	GGCC	2 cut(s)	617, 724
BshNI	GGYRCC	1 cut(s)	541
BslFI	GGGAC	1 cut(s)	917
BslI	CCNNNNNNNGG	1 cut(s)	731
BsmAI	GTCTC	3 cut(s)	112, 395, 456
BsmFI	GGGAC	1 cut(s)	917
BsnI	GGCC	2 cut(s)	617, 724
Bsp1407I	TGTACA	1 cut(s)	955
Bsp143I	GATC	7 cut(s)	73, 700, 717, 727, 775, 856, 928
BspACI	CCGC	2 cut(s)	835, 908
BspANI	GGCC	2 cut(s)	617, 724
BspCNI	CTCAG	3 cut(s)	9, 370, 603
BspFNI	CGCG	2 cut(s)	90, 908
BspLI	GGNNCC	1 cut(s)	543
BspMAI	CTGCAG	1 cut(s)	1060
BspPI	GGATC	3 cut(s)	68, 695, 923
BspQI	GCTCTTC	1 cut(s)	597
BspT107I	GGYRCC	1 cut(s)	541
BsrGI	TGTACA	1 cut(s)	955
BsrI	ACTGG	1 cut(s)	1000
BssMI	GATC	7 cut(s)	73, 700, 717, 727, 775, 856, 928
Bst4CI	ACNGT	3 cut(s)	421, 608, 660
Bst6I	CTCTTC	1 cut(s)	597
BstAUI	TGTACA	1 cut(s)	955
BstC8I	GCNNGC	1 cut(s)	430
BstDEI	CTNAG	4 cut(s)	17, 262, 357, 611
BstEII	GGTNACC	1 cut(s)	830
BstFNI	CGCG	2 cut(s)	90, 908
BstHHI	GCGC	1 cut(s)	759
BstKTI	GATC	7 cut(s)	76, 703, 720, 730, 778, 859, 931
BstMAI	GTCTC	3 cut(s)	112, 395, 456
BstMBI	GATC	7 cut(s)	73, 700, 717, 727, 775, 856, 928
BstMWI	GCNNNNNNNGC	1 cut(s)	808
BstNSI	RCATGY	2 cut(s)	576, 962
BstPAI	GACNNNNGTC	1 cut(s)	419
BstPI	GGTNACC	1 cut(s)	830
BstSFI	CTRYAG	1 cut(s)	1056
BstUI	CGCG	2 cut(s)	90, 908
BstV1I	GCAGC	8 cut(s)	169, 205, 299, 891, 931, 952, 974, 1042
BstV2I	GAAGAC	1 cut(s)	998
BstXI	CCANNNNNNTGG	1 cut(s)	163
BsuRI	GGCC	2 cut(s)	617, 724
BtrI	CACGTC	1 cut(s)	224
BtsIMutI	CAGTG	2 cut(s)	233, 417
Cac8I	GCNNGC	1 cut(s)	430
CaiI	CAGNNNCTG	1 cut(s)	218
CfoI	GCGC	1 cut(s)	759
Cfr13I	GGNCC	3 cut(s)	484, 615, 915
CseI	GACGC	1 cut(s)	914
Csp6I	GTAC	5 cut(s)	28, 134, 601, 656, 956
CspCI	CAANNNNNGTGG	2 cut(s)	876, 911
CviAII	CATG	3 cut(s)	573, 860, 959
CviQI	GTAC	5 cut(s)	28, 134, 601, 656, 956
DdeI	CTNAG	4 cut(s)	17, 262, 357, 611
DpnI	GATC	7 cut(s)	75, 702, 719, 729, 777, 858, 930
DpnII	GATC	7 cut(s)	73, 700, 717, 727, 775, 856, 928
DraI	TTTAAA	1 cut(s)	282
DraIII	CACNNNGTG	1 cut(s)	953
DriI	GACNNNNNGTC	1 cut(s)	999
Eam1104I	CTCTTC	1 cut(s)	597
Eam1105I	GACNNNNNGTC	1 cut(s)	999
EarI	CTCTTC	1 cut(s)	597
Eco147I	AGGCCT	1 cut(s)	724
Eco47I	GGWCC	2 cut(s)	484, 915
Eco57I	CTGAAG	1 cut(s)	615
Eco91I	GGTNACC	1 cut(s)	830
EcoO65I	GGTNACC	1 cut(s)	830
EcoRI	GAATTC	1 cut(s)	674
FaeI	CATG	3 cut(s)	576, 863, 962
FalI	AAGNNNNNCTT	2 cut(s)	737, 769
FaqI	GGGAC	1 cut(s)	917
FatI	CATG	3 cut(s)	572, 859, 958
FauNDI	CATATG	1 cut(s)	406
FbaI	TGATCA	2 cut(s)	717, 775
Fnu4HI	GCNGC	8 cut(s)	183, 219, 288, 880, 945, 963, 966, 1056
Fsp4HI	GCNGC	8 cut(s)	183, 219, 288, 880, 945, 963, 966, 1056
FspI	TGCGCA	1 cut(s)	758
GlaI	GCGC	1 cut(s)	758
GluI	GCNGC	8 cut(s)	183, 219, 288, 880, 945, 963, 966, 1056
GsuI	CTGGAG	1 cut(s)	258
HaeIII	GGCC	2 cut(s)	617, 724
HgaI	GACGC	1 cut(s)	914
HhaI	GCGC	1 cut(s)	759
Hin1II	CATG	3 cut(s)	576, 863, 962
Hin6I	GCGC	1 cut(s)	757
HinP1I	GCGC	1 cut(s)	757
HinfI	GANTC	3 cut(s)	167, 977, 1013
HphI	GGTGA	3 cut(s)	506, 554, 587
Hpy166II	GTNNAC	1 cut(s)	956
Hpy188I	TCNGA	5 cut(s)	214, 425, 505, 612, 780
Hpy188III	TCNNGA	7 cut(s)	35, 156, 275, 359, 665, 682, 704
Hpy8I	GTNNAC	1 cut(s)	956
HpyAV	CCTTC	5 cut(s)	15, 97, 356, 491, 799
HpyCH4III	ACNGT	3 cut(s)	421, 608, 660
HpyCH4IV	ACGT	1 cut(s)	223
HpyCH4V	TGCA	9 cut(s)	8, 221, 374, 802, 879, 947, 962, 1043, 1058
HpyF10VI	GCNNNNNNNGC	1 cut(s)	808
HpyF3I	CTNAG	4 cut(s)	17, 262, 357, 611
HpySE526I	ACGT	1 cut(s)	223
Hsp92II	CATG	3 cut(s)	576, 863, 962
HspAI	GCGC	1 cut(s)	757
Ksp22I	TGATCA	2 cut(s)	717, 775
Kzo9I	GATC	7 cut(s)	73, 700, 717, 727, 775, 856, 928
LguI	GCTCTTC	1 cut(s)	597
LmnI	GCTCC	1 cut(s)	808
Lsp1109I	GCAGC	8 cut(s)	169, 205, 299, 891, 931, 952, 974, 1042
LweI	GCATC	2 cut(s)	361, 866
MaeII	ACGT	1 cut(s)	223
MaeIII	GTNAC	6 cut(s)	171, 187, 234, 412, 830, 1010
MalI	GATC	7 cut(s)	75, 702, 719, 729, 777, 858, 930
MboI	GATC	7 cut(s)	73, 700, 717, 727, 775, 856, 928
MboII	GAAGA	5 cut(s)	64, 392, 584, 592, 1003
MluCI	AATT	4 cut(s)	239, 334, 674, 738
MlyI	GAGTC	2 cut(s)	161, 1007
MnlI	CCTC	9 cut(s)	5, 85, 152, 259, 547, 606, 640, 894, 967
MseI	TTAA	3 cut(s)	113, 281, 585
MslI	CAYNNNNRTG	2 cut(s)	226, 437
MspA1I	CMGCKG	2 cut(s)	837, 965
MvnI	CGCG	2 cut(s)	90, 908
MwoI	GCNNNNNNNGC	1 cut(s)	808
NdeI	CATATG	1 cut(s)	406
NdeII	GATC	7 cut(s)	73, 700, 717, 727, 775, 856, 928
NlaIII	CATG	3 cut(s)	576, 863, 962
NlaIV	GGNNCC	1 cut(s)	543
NmuCI	GTSAC	5 cut(s)	171, 187, 234, 412, 1010
NsbI	TGCGCA	1 cut(s)	758
NspI	RCATGY	2 cut(s)	576, 962
OliI	CACNNNNGTG	1 cut(s)	226
PceI	AGGCCT	1 cut(s)	724
PciSI	GCTCTTC	1 cut(s)	597
PfeI	GAWTC	1 cut(s)	977
PkrI	GCNGC	8 cut(s)	184, 220, 289, 881, 946, 964, 967, 1057
PleI	GAGTC	2 cut(s)	161, 1007
PpsI	GAGTC	2 cut(s)	161, 1007
PshAI	GACNNNNGTC	1 cut(s)	419
PspEI	GGTNACC	1 cut(s)	830
PspN4I	GGNNCC	1 cut(s)	543
PspPI	GGNCC	3 cut(s)	484, 615, 915
PstI	CTGCAG	1 cut(s)	1060
PstNI	CAGNNNCTG	1 cut(s)	218
PvuII	CAGCTG	1 cut(s)	965
RsaI	GTAC	5 cut(s)	29, 135, 602, 657, 957
RsaNI	GTAC	5 cut(s)	28, 134, 601, 656, 956
RseI	CAYNNNNRTG	2 cut(s)	226, 437
SapI	GCTCTTC	1 cut(s)	597
SaqAI	TTAA	3 cut(s)	113, 281, 585
SatI	GCNGC	8 cut(s)	183, 219, 288, 880, 945, 963, 966, 1056
Sau3AI	GATC	7 cut(s)	73, 700, 717, 727, 775, 856, 928
Sau96I	GGNCC	3 cut(s)	484, 615, 915
SchI	GAGTC	2 cut(s)	161, 1007
SfaNI	GCATC	2 cut(s)	361, 866
SfcI	CTRYAG	1 cut(s)	1056
SinI	GGWCC	2 cut(s)	484, 915
SmiMI	CAYNNNNRTG	2 cut(s)	226, 437
SmlI	CTYRAG	1 cut(s)	651
SmoI	CTYRAG	1 cut(s)	651
Sse9I	AATT	4 cut(s)	239, 334, 674, 738
SseBI	AGGCCT	1 cut(s)	724
SsiI	CCGC	2 cut(s)	835, 908
StuI	AGGCCT	1 cut(s)	724
TaaI	ACNGT	3 cut(s)	421, 608, 660
TaiI	ACGT	1 cut(s)	226
TasI	AATT	4 cut(s)	239, 334, 674, 738
TatI	WGTACW	1 cut(s)	955
TfiI	GAWTC	1 cut(s)	977
Tru1I	TTAA	3 cut(s)	113, 281, 585
Tru9I	TTAA	3 cut(s)	113, 281, 585
TscAI	CASTG	2 cut(s)	233, 424
TseFI	GTSAC	5 cut(s)	171, 187, 234, 412, 1010
TseI	GCWGC	8 cut(s)	182, 218, 287, 879, 944, 962, 965, 1055
Tsp45I	GTSAC	5 cut(s)	171, 187, 234, 412, 1010
TspDTI	ATGAA	3 cut(s)	340, 522, 667
TspGWI	ACGGA	1 cut(s)	342
TspRI	CASTG	2 cut(s)	233, 424
VpaK11BI	GGWCC	2 cut(s)	484, 915
XapI	RAATTY	1 cut(s)	674
XceI	RCATGY	2 cut(s)	576, 962

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.