Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Forward (+)

25052357 .. 25056899

Gene Structure 4543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018073

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGTGTGGAATTCTCGCCGTCTTGGGCTGCGCCGACAACTCTCAGGCCAAGCGGTTGAGGCATCGCGGGCCTGATTGGAGCGGGTTGCATTGCCATGGGGATTGTTACCTTGCTCATCAGCGATTGGCTATTGTGGACCCTGCCTCAGGAGATCAGCCGCTCTACAACGAGGACAAGACCGTCATTGTTACGGTTAATGGTGAGATATATAACCACAAGCAGTTGAGAGAAACATTGAAGGGTCATCGATTCCGAACTGGCAGTGACTGTGAAGTGATAGCGCATCTTTACGAGGAACATGGGGAAGAATTTGTTGACATGCTGGACGGGATGTTCTCCTTTGTCCTCCTTGATACAAGAGACAACACTTTCATGGCGGCTCGAGATGCTATTGGCATTACCCCACTTTACATGGGTTGGGGTCTTGATGGATCAATTTGGTTTGCTTCAGAAATGAAAGCTATAAGTGATGATTGTGAAAGATTCATATCTTTTCCTCCTGGGCATCTATACTCTAGCAAACAAGGAGGGCTGAGAAGGTGGTACAATCCAGAATGGTTTTTGGAGAAGATACCATCATCTCCTTATGATCCCATGGTTTTACGCGAGGCTTTTGAGAAGGCTGTGTTAAAGAGACTTATGACAGATGTACCGTTCGGTGTTCTTTTGTCCGGAGGATTGGACTCGTCACTTGTTGCTGCTGTGGCTTGTCGCTATTTGGCTAAATCAGAAGCTGCACGTCAGTGGGGGTCACAATTACATACCTTTTGCGTTGGCTTAGAGGGTTCTCCAGATTTAAAAGCAGCAAGAGAAGTTGCTGATTATCTTGGAACTCATCATCACGAGTTTCACTTTACTGTTCAGGAGGGCATAGATGCACTTGAAGAAGTTATCTACCATATTGAGACATATGATGTGACCACTGTCAGAGCCAGCACTCCAATGTTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

318

Amino Acids

35.68

Weight (kDa)

5.48

Isoelectric Point (pI)

37.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase_6	PF13522	24 - 151	1.5e-37	Glutamine amidotransferase domain
GATase_7	PF13537	39 - 156	1.2e-43	Glutamine amidotransferase domain
DUF3700	PF12481	103 - 194	6.1e-13	Aluminium induced protein
Asn_synthase	PF00733	201 - 316	4.7e-34	Asparagine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
AccBSI	CCGCTC	2 cut(s)	81, 160
AccII	CGCG	2 cut(s)	66, 606
AccIII	TCCGGA	1 cut(s)	671
AciI	CCGC	5 cut(s)	52, 66, 81, 158, 377
AclWI	GGATC	2 cut(s)	439, 584
AcsI	RAATTY	2 cut(s)	9, 308
AcuI	CTGAAG	1 cut(s)	432
AfaI	GTAC	2 cut(s)	545, 651
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	2 cut(s)	238, 884
AjiI	CACGTC	1 cut(s)	740
AjnI	CCWGG	1 cut(s)	499
AleI	CACNNNNGTG	1 cut(s)	742
AloI	GAACNNNNNNTCC	2 cut(s)	317, 349
AluBI	AGCT	2 cut(s)	461, 734
AluI	AGCT	2 cut(s)	461, 734
Alw26I	GTCTC	3 cut(s)	354, 628, 899
AlwI	GGATC	2 cut(s)	439, 584
AlwNI	CAGNNNCTG	2 cut(s)	267, 734
Ama87I	CYCGRG	1 cut(s)	381
Aor13HI	TCCGGA	1 cut(s)	671
AoxI	GGCC	2 cut(s)	45, 68
ApeKI	GCWGC	4 cut(s)	27, 698, 734, 803
ApoI	RAATTY	2 cut(s)	9, 308
AspLEI	GCGC	2 cut(s)	32, 283
AspS9I	GGNCC	2 cut(s)	68, 136
AsuHPI	GGTGA	1 cut(s)	212
AvaI	CYCGRG	1 cut(s)	381
AvaII	GGWCC	1 cut(s)	136
AxyI	CCTNAGG	1 cut(s)	145
BaeI	ACNNNNGTAYC	2 cut(s)	633, 666
BauI	CACGAG	1 cut(s)	842
BbvI	GCAGC	4 cut(s)	14, 685, 721, 815
BccI	CCATC	2 cut(s)	422, 583
BceAI	ACGGC	1 cut(s)	2
BciT130I	CCWGG	1 cut(s)	501
BcoDI	GTCTC	3 cut(s)	354, 628, 899
BfaI	CTAG	1 cut(s)	516
BisI	GCNGC	6 cut(s)	28, 158, 378, 699, 735, 804
BlsI	GCNGC	6 cut(s)	29, 159, 379, 700, 736, 805
Bme1390I	CCNGG	1 cut(s)	501
Bme18I	GGWCC	1 cut(s)	136
BmeT110I	CYCGRG	1 cut(s)	381
BmgBI	CACGTC	1 cut(s)	740
BmgT120I	GGNCC	2 cut(s)	68, 136
BmiI	GGNNCC	1 cut(s)	138
BmrFI	CCNGG	1 cut(s)	501
BmsI	GCATC	5 cut(s)	70, 292, 376, 514, 865
BoxI	GACNNNNGTC	1 cut(s)	923
BpmI	CTGGAG	1 cut(s)	774
Bsa29I	ATCGAT	1 cut(s)	247
BsaBI	GATNNNNATC	1 cut(s)	487
BsaJI	CCNNGG	3 cut(s)	94, 500, 594
BsaWI	WCCGGW	1 cut(s)	671
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse1I	ACTGG	1 cut(s)	262
Bse21I	CCTNAGG	1 cut(s)	145
Bse3DI	GCAATG	1 cut(s)	88
Bse8I	GATNNNNATC	1 cut(s)	487
BseAI	TCCGGA	1 cut(s)	671
BseBI	CCWGG	1 cut(s)	501
BseCI	ATCGAT	1 cut(s)	247
BseDI	CCNNGG	3 cut(s)	94, 500, 594
BseGI	GGATG	1 cut(s)	336
BseJI	GATNNNNATC	1 cut(s)	487
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMI	GCAATG	1 cut(s)	88
BseMII	CTCAG	3 cut(s)	56, 159, 524
BseNI	ACTGG	1 cut(s)	262
BseXI	GCAGC	4 cut(s)	14, 685, 721, 815
BsgI	GTGCAG	1 cut(s)	720
Bsh1236I	CGCG	2 cut(s)	66, 606
BshFI	GGCC	2 cut(s)	47, 70
BshVI	ATCGAT	1 cut(s)	247
BsiHKCI	CYCGRG	1 cut(s)	381
BsiSI	CCGG	1 cut(s)	672
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmAI	GTCTC	3 cut(s)	354, 628, 899
BsnI	GGCC	2 cut(s)	47, 70
BsoBI	CYCGRG	1 cut(s)	381
Bsp13I	TCCGGA	1 cut(s)	671
Bsp143I	GATC	3 cut(s)	151, 431, 589
Bsp19I	CCATGG	2 cut(s)	94, 594
BspACI	CCGC	5 cut(s)	52, 66, 81, 158, 377
BspANI	GGCC	2 cut(s)	47, 70
BspCNI	CTCAG	3 cut(s)	55, 158, 525
BspDI	ATCGAT	1 cut(s)	247
BspEI	TCCGGA	1 cut(s)	671
BspFNI	CGCG	2 cut(s)	66, 606
BspLI	GGNNCC	1 cut(s)	138
BspPI	GGATC	2 cut(s)	439, 584
BsrBI	CCGCTC	2 cut(s)	81, 160
BsrDI	GCAATG	1 cut(s)	88
BsrI	ACTGG	1 cut(s)	262
BssECI	CCNNGG	3 cut(s)	94, 500, 594
BssMI	GATC	3 cut(s)	151, 431, 589
BssSI	CACGAG	1 cut(s)	842
BssT1I	CCWWGG	2 cut(s)	94, 594
Bst2BI	CACGAG	1 cut(s)	842
Bst2UI	CCWGG	1 cut(s)	501
Bst4CI	ACNGT	6 cut(s)	181, 193, 269, 654, 859, 925
BstC8I	GCNNGC	2 cut(s)	68, 934
BstDEI	CTNAG	4 cut(s)	42, 145, 533, 778
BstDSI	CCRYGG	2 cut(s)	94, 594
BstENI	CCTNNNNNAGG	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	336
BstFNI	CGCG	2 cut(s)	66, 606
BstHHI	GCGC	2 cut(s)	32, 283
BstKTI	GATC	3 cut(s)	154, 434, 592
BstMAI	GTCTC	3 cut(s)	354, 628, 899
BstMBI	GATC	3 cut(s)	151, 431, 589
BstMWI	GCNNNNNNNGC	4 cut(s)	58, 67, 386, 704
BstNI	CCWGG	1 cut(s)	501
BstNSI	RCATGY	1 cut(s)	322
BstPAI	GACNNNNGTC	1 cut(s)	923
BstSCI	CCNGG	1 cut(s)	499
BstUI	CGCG	2 cut(s)	66, 606
BstV1I	GCAGC	4 cut(s)	14, 685, 721, 815
Bsu15I	ATCGAT	1 cut(s)	247
Bsu36I	CCTNAGG	1 cut(s)	145
BsuRI	GGCC	2 cut(s)	47, 70
BsuTUI	ATCGAT	1 cut(s)	247
BtgI	CCRYGG	2 cut(s)	94, 594
BtgZI	GCGATG	1 cut(s)	47
BtrI	CACGTC	1 cut(s)	740
BtsCI	GGATG	1 cut(s)	336
BtsI	GCAGTG	1 cut(s)	268
BtsIMutI	CAGTG	3 cut(s)	268, 749, 921
Cac8I	GCNNGC	2 cut(s)	68, 934
CaiI	CAGNNNCTG	2 cut(s)	267, 734
CfoI	GCGC	2 cut(s)	32, 283
Cfr13I	GGNCC	2 cut(s)	68, 136
ClaI	ATCGAT	1 cut(s)	247
Csp6I	GTAC	2 cut(s)	544, 650
CviAII	CATG	6 cut(s)	95, 299, 319, 373, 412, 595
CviQI	GTAC	2 cut(s)	544, 650
DdeI	CTNAG	4 cut(s)	42, 145, 533, 778
DpnI	GATC	3 cut(s)	153, 433, 591
DpnII	GATC	3 cut(s)	151, 431, 589
DraI	TTTAAA	1 cut(s)	798
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
Eco130I	CCWWGG	2 cut(s)	94, 594
Eco47I	GGWCC	1 cut(s)	136
Eco57I	CTGAAG	1 cut(s)	432
Eco81I	CCTNAGG	1 cut(s)	145
Eco88I	CYCGRG	1 cut(s)	381
EcoNI	CCTNNNNNAGG	1 cut(s)	144
EcoRI	GAATTC	1 cut(s)	9
EcoRII	CCWGG	1 cut(s)	499
EcoT14I	CCWWGG	2 cut(s)	94, 594
ErhI	CCWWGG	2 cut(s)	94, 594
FaeI	CATG	6 cut(s)	98, 302, 322, 376, 415, 598
FatI	CATG	6 cut(s)	94, 298, 318, 372, 411, 594
FauI	CCCGC	2 cut(s)	59, 74
FauNDI	CATATG	1 cut(s)	910
Fnu4HI	GCNGC	6 cut(s)	28, 158, 378, 699, 735, 804
FokI	GGATG	1 cut(s)	343
Fsp4HI	GCNGC	6 cut(s)	28, 158, 378, 699, 735, 804
FspBI	CTAG	1 cut(s)	516
GlaI	GCGC	2 cut(s)	31, 282
GluI	GCNGC	6 cut(s)	28, 158, 378, 699, 735, 804
GsuI	CTGGAG	1 cut(s)	774
HaeIII	GGCC	2 cut(s)	47, 70
HapII	CCGG	1 cut(s)	672
HhaI	GCGC	2 cut(s)	32, 283
Hin1II	CATG	6 cut(s)	98, 302, 322, 376, 415, 598
Hin6I	GCGC	2 cut(s)	30, 281
HinP1I	GCGC	2 cut(s)	30, 281
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HinfI	GANTC	3 cut(s)	249, 483, 683
HpaII	CCGG	1 cut(s)	672
HphI	GGTGA	1 cut(s)	212
Hpy166II	GTNNAC	2 cut(s)	136, 316
Hpy188I	TCNGA	5 cut(s)	254, 451, 730, 929, 950
Hpy188III	TCNNGA	8 cut(s)	147, 383, 425, 551, 672, 791, 842, 863
Hpy8I	GTNNAC	2 cut(s)	136, 316
HpyAV	CCTTC	3 cut(s)	232, 531, 613
HpyCH4III	ACNGT	6 cut(s)	181, 193, 269, 654, 859, 925
HpyCH4IV	ACGT	1 cut(s)	739
HpyCH4V	TGCA	3 cut(s)	88, 737, 878
HpyF10VI	GCNNNNNNNGC	4 cut(s)	58, 67, 386, 704
HpyF3I	CTNAG	4 cut(s)	42, 145, 533, 778
HpySE526I	ACGT	1 cut(s)	739
Hsp92II	CATG	6 cut(s)	98, 302, 322, 376, 415, 598
HspAI	GCGC	2 cut(s)	30, 281
Kpn2I	TCCGGA	1 cut(s)	671
Kzo9I	GATC	3 cut(s)	151, 431, 589
LmnI	GCTCC	1 cut(s)	78
Lsp1109I	GCAGC	4 cut(s)	14, 685, 721, 815
LweI	GCATC	5 cut(s)	70, 292, 376, 514, 865
MaeI	CTAG	1 cut(s)	516
MaeII	ACGT	1 cut(s)	739
MaeIII	GTNAC	6 cut(s)	104, 187, 263, 687, 750, 916
MalI	GATC	3 cut(s)	153, 433, 591
MbiI	CCGCTC	2 cut(s)	81, 160
MboI	GATC	3 cut(s)	151, 431, 589
MboII	GAAGA	3 cut(s)	317, 580, 896
MluCI	AATT	4 cut(s)	9, 308, 435, 755
MlyI	GAGTC	1 cut(s)	677
MroI	TCCGGA	1 cut(s)	671
MseI	TTAA	3 cut(s)	195, 629, 797
MslI	CAYNNNNRTG	4 cut(s)	93, 371, 742, 941
MspI	CCGG	1 cut(s)	672
MspR9I	CCNGG	1 cut(s)	501
MvaI	CCWGG	1 cut(s)	501
MvnI	CGCG	2 cut(s)	66, 606
MwoI	GCNNNNNNNGC	4 cut(s)	58, 67, 386, 704
NcoI	CCATGG	2 cut(s)	94, 594
NdeI	CATATG	1 cut(s)	910
NdeII	GATC	3 cut(s)	151, 431, 589
NlaIII	CATG	6 cut(s)	98, 302, 322, 376, 415, 598
NlaIV	GGNNCC	1 cut(s)	138
NmuCI	GTSAC	4 cut(s)	263, 687, 750, 916
NspI	RCATGY	1 cut(s)	322
OliI	CACNNNNGTG	1 cut(s)	742
PaeR7I	CTCGAG	1 cut(s)	381
PfeI	GAWTC	2 cut(s)	249, 483
PkrI	GCNGC	6 cut(s)	29, 159, 379, 700, 736, 805
PleI	GAGTC	1 cut(s)	677
PpsI	GAGTC	1 cut(s)	677
PshAI	GACNNNNGTC	1 cut(s)	923
Psp6I	CCWGG	1 cut(s)	499
PspGI	CCWGG	1 cut(s)	499
PspN4I	GGNNCC	1 cut(s)	138
PspPI	GGNCC	2 cut(s)	68, 136
PstNI	CAGNNNCTG	2 cut(s)	267, 734
RsaI	GTAC	2 cut(s)	545, 651
RsaNI	GTAC	2 cut(s)	544, 650
RseI	CAYNNNNRTG	4 cut(s)	93, 371, 742, 941
SaqAI	TTAA	3 cut(s)	195, 629, 797
SatI	GCNGC	6 cut(s)	28, 158, 378, 699, 735, 804
Sau3AI	GATC	3 cut(s)	151, 431, 589
Sau96I	GGNCC	2 cut(s)	68, 136
SchI	GAGTC	1 cut(s)	677
ScrFI	CCNGG	1 cut(s)	501
SetI	ASST	6 cut(s)	111, 463, 542, 736, 742, 767
SfaNI	GCATC	5 cut(s)	70, 292, 376, 514, 865
Sfr274I	CTCGAG	1 cut(s)	381
SinI	GGWCC	1 cut(s)	136
SlaI	CTCGAG	1 cut(s)	381
SmiMI	CAYNNNNRTG	4 cut(s)	93, 371, 742, 941
SmlI	CTYRAG	1 cut(s)	381
SmoI	CTYRAG	1 cut(s)	381
Sse9I	AATT	4 cut(s)	9, 308, 435, 755
SsiI	CCGC	5 cut(s)	52, 66, 81, 158, 377
SspMI	CTAG	1 cut(s)	516
StyD4I	CCNGG	1 cut(s)	499
StyI	CCWWGG	2 cut(s)	94, 594
TaaI	ACNGT	6 cut(s)	181, 193, 269, 654, 859, 925
TaiI	ACGT	1 cut(s)	742
TaqI	TCGA	2 cut(s)	247, 382
TasI	AATT	4 cut(s)	9, 308, 435, 755
TauI	GCSGC	2 cut(s)	160, 380
TfiI	GAWTC	2 cut(s)	249, 483
Tru1I	TTAA	3 cut(s)	195, 629, 797
Tru9I	TTAA	3 cut(s)	195, 629, 797
TscAI	CASTG	3 cut(s)	268, 749, 928
TseFI	GTSAC	4 cut(s)	263, 687, 750, 916
TseI	GCWGC	4 cut(s)	27, 698, 734, 803
Tsp45I	GTSAC	4 cut(s)	263, 687, 750, 916
TspDTI	ATGAA	3 cut(s)	361, 470, 475
TspRI	CASTG	3 cut(s)	268, 749, 928
VpaK11BI	GGWCC	1 cut(s)	136
XagI	CCTNNNNNAGG	1 cut(s)	144
XapI	RAATTY	2 cut(s)	9, 308
XceI	RCATGY	1 cut(s)	322
XhoI	CTCGAG	1 cut(s)	381
XspI	CTAG	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.