Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Forward (+)

25806875 .. 25809029

Gene Structure 2155 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48699

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGATCAGGCCTGATCTTGGGAGAATTGAGAAGTGGGTCTTGCGCAAAGCATTTGATGATGATCAGAAGCCATATTTACCAAAGCACATCTTGTACAGGCTGAAAGAGCAGTTTAGTGATGGTGTCGGTTACAGCTGGATTGACGGCTTGAAAGATCATGCCAACAAACAAGTAACAGATTCGATGCTGATGAACACAAGCTTTGTCTACCCTGAAAACACTGCAACTACAAAAGAAGGATACTACTATAGGACTATCTTTGAGAAATATTTTCCAAAGAATGCTGCGAGATCGACAGTTCCCGGTGGTCCAAGTGTGGCATGCAGCACAGAAAAAGCTGTGGAGTGGGATGCGGAATTGTTCAAGAACCCTGATCCATCTGGTCGTGCTGCACTTGGTATACATGCAGCTGCGTATGAGGAATCCAAAGATGGGAAGGCTGGAAGTCTTGTGAGTGACTCTCCACAGAAACTTGTAAAAGGGGTTGCAGAGAAAGTGGCTGCAGTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

170

Amino Acids

18.92

Weight (kDa)

7.76

Isoelectric Point (pI)

34.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asn_synthase	PF00733	7 - 96	1.1e-11	Asparagine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	44
AccI	GTMKAC	2 cut(s)	207, 400
AciI	CCGC	1 cut(s)	353
AclWI	GGATC	1 cut(s)	368
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	2 cut(s)	17, 432
AgsI	TTSAA	2 cut(s)	151, 364
AluBI	AGCT	4 cut(s)	135, 201, 338, 410
AluI	AGCT	4 cut(s)	135, 201, 338, 410
AlwI	GGATC	1 cut(s)	368
AoxI	GGCC	1 cut(s)	8
ApeKI	GCWGC	6 cut(s)	284, 324, 389, 407, 410, 500
AspLEI	GCGC	1 cut(s)	45
AspS9I	GGNCC	1 cut(s)	308
AsuC2I	CCSGG	1 cut(s)	303
AvaII	GGWCC	1 cut(s)	308
BbvI	GCAGC	6 cut(s)	271, 336, 376, 397, 419, 487
BccI	CCATC	3 cut(s)	113, 385, 425
BceAI	ACGGC	1 cut(s)	160
BciVI	GTATCC	1 cut(s)	233
BclI	TGATCA	2 cut(s)	3, 61
BcnI	CCSGG	1 cut(s)	303
BfmI	CTRYAG	2 cut(s)	247, 501
BfuI	GTATCC	1 cut(s)	233
BisI	GCNGC	6 cut(s)	285, 325, 390, 408, 411, 501
BlsI	GCNGC	6 cut(s)	286, 326, 391, 409, 412, 502
Bme1390I	CCNGG	1 cut(s)	303
Bme18I	GGWCC	1 cut(s)	308
BmgT120I	GGNCC	1 cut(s)	308
BmrFI	CCNGG	1 cut(s)	303
BmsI	GCATC	2 cut(s)	174, 340
BplI	GAGNNNNNCTC	2 cut(s)	445, 477
BpuMI	CCSGG	1 cut(s)	303
BsaBI	GATNNNNATC	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 432
Bse8I	GATNNNNATC	1 cut(s)	60
BseGI	GGATG	1 cut(s)	355
BseJI	GATNNNNATC	1 cut(s)	60
BseLI	CCNNNNNNNGG	2 cut(s)	17, 432
BseXI	GCAGC	6 cut(s)	271, 336, 376, 397, 419, 487
BsgI	GTGCAG	1 cut(s)	375
BshFI	GGCC	1 cut(s)	10
BsiSI	CCGG	1 cut(s)	303
BslI	CCNNNNNNNGG	2 cut(s)	17, 432
BsmI	GAATGC	1 cut(s)	286
BsnI	GGCC	1 cut(s)	10
Bsp1407I	TGTACA	1 cut(s)	93
Bsp143I	GATC	6 cut(s)	3, 13, 61, 154, 290, 373
BspACI	CCGC	1 cut(s)	353
BspANI	GGCC	1 cut(s)	10
BspMAI	CTGCAG	1 cut(s)	505
BspPI	GGATC	1 cut(s)	368
BsrGI	TGTACA	1 cut(s)	93
BssMI	GATC	6 cut(s)	3, 13, 61, 154, 290, 373
BssNAI	GTATAC	1 cut(s)	401
Bst1107I	GTATAC	1 cut(s)	401
Bst4CI	ACNGT	1 cut(s)	298
BstAUI	TGTACA	1 cut(s)	93
BstC8I	GCNNGC	1 cut(s)	322
BstF5I	GGATG	1 cut(s)	355
BstHHI	GCGC	1 cut(s)	45
BstKTI	GATC	6 cut(s)	6, 16, 64, 157, 293, 376
BstMBI	GATC	6 cut(s)	3, 13, 61, 154, 290, 373
BstMWI	GCNNNNNNNGC	1 cut(s)	106
BstNSI	RCATGY	2 cut(s)	324, 407
BstSCI	CCNGG	1 cut(s)	301
BstSFI	CTRYAG	2 cut(s)	247, 501
BstV1I	GCAGC	6 cut(s)	271, 336, 376, 397, 419, 487
BstZ17I	GTATAC	1 cut(s)	401
BsuI	GTATCC	1 cut(s)	233
BsuRI	GGCC	1 cut(s)	10
BtsCI	GGATG	1 cut(s)	355
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	219
Cac8I	GCNNGC	1 cut(s)	322
CfoI	GCGC	1 cut(s)	45
Cfr13I	GGNCC	1 cut(s)	308
Csp6I	GTAC	1 cut(s)	94
CviAII	CATG	3 cut(s)	158, 321, 404
CviQI	GTAC	1 cut(s)	94
DpnI	GATC	6 cut(s)	5, 15, 63, 156, 292, 375
DpnII	GATC	6 cut(s)	3, 13, 61, 154, 290, 373
Eco147I	AGGCCT	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	308
FaeI	CATG	3 cut(s)	161, 324, 407
FaiI	YATR	7 cut(s)	73, 159, 249, 322, 401, 405, 417
FalI	AAGNNNNNCTT	4 cut(s)	23, 55, 74, 106
FatI	CATG	3 cut(s)	157, 320, 403
FbaI	TGATCA	2 cut(s)	3, 61
FblI	GTMKAC	2 cut(s)	207, 400
Fnu4HI	GCNGC	6 cut(s)	285, 325, 390, 408, 411, 501
FokI	GGATG	1 cut(s)	362
Fsp4HI	GCNGC	6 cut(s)	285, 325, 390, 408, 411, 501
FspI	TGCGCA	1 cut(s)	44
GlaI	GCGC	1 cut(s)	44
GluI	GCNGC	6 cut(s)	285, 325, 390, 408, 411, 501
HaeIII	GGCC	1 cut(s)	10
HapII	CCGG	1 cut(s)	303
HhaI	GCGC	1 cut(s)	45
Hin1II	CATG	3 cut(s)	161, 324, 407
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HindIII	AAGCTT	1 cut(s)	199
HinfI	GANTC	3 cut(s)	179, 422, 458
HpaII	CCGG	1 cut(s)	303
Hpy166II	GTNNAC	2 cut(s)	208, 401
Hpy188I	TCNGA	1 cut(s)	66
Hpy188III	TCNNGA	1 cut(s)	364
Hpy8I	GTNNAC	2 cut(s)	208, 401
HpyAV	CCTTC	2 cut(s)	230, 430
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4V	TGCA	6 cut(s)	224, 324, 392, 407, 488, 503
HpyF10VI	GCNNNNNNNGC	1 cut(s)	106
Hsp92II	CATG	3 cut(s)	161, 324, 407
HspAI	GCGC	1 cut(s)	43
Ksp22I	TGATCA	2 cut(s)	3, 61
Kzo9I	GATC	6 cut(s)	3, 13, 61, 154, 290, 373
LpnPI	CCDG	8 cut(s)	24, 82, 121, 225, 316, 366, 384, 426
Lsp1109I	GCAGC	6 cut(s)	271, 336, 376, 397, 419, 487
LweI	GCATC	2 cut(s)	174, 340
MaeIII	GTNAC	3 cut(s)	128, 172, 455
MalI	GATC	6 cut(s)	5, 15, 63, 156, 292, 375
MboI	GATC	6 cut(s)	3, 13, 61, 154, 290, 373
MluCI	AATT	2 cut(s)	24, 356
MlyI	GAGTC	1 cut(s)	452
MnlI	CCTC	1 cut(s)	412
MspA1I	CMGCKG	2 cut(s)	135, 410
MspI	CCGG	1 cut(s)	303
MspR9I	CCNGG	1 cut(s)	303
Mva1269I	GAATGC	1 cut(s)	286
MwoI	GCNNNNNNNGC	1 cut(s)	106
NciI	CCSGG	1 cut(s)	303
NdeII	GATC	6 cut(s)	3, 13, 61, 154, 290, 373
NlaIII	CATG	3 cut(s)	161, 324, 407
NmuCI	GTSAC	1 cut(s)	455
NsbI	TGCGCA	1 cut(s)	44
NspI	RCATGY	2 cut(s)	324, 407
PaeI	GCATGC	1 cut(s)	324
PceI	AGGCCT	1 cut(s)	10
PctI	GAATGC	1 cut(s)	286
PfeI	GAWTC	2 cut(s)	179, 422
PkrI	GCNGC	6 cut(s)	286, 326, 391, 409, 412, 502
PleI	GAGTC	1 cut(s)	452
PpsI	GAGTC	1 cut(s)	452
PspPI	GGNCC	1 cut(s)	308
PstI	CTGCAG	1 cut(s)	505
PvuII	CAGCTG	2 cut(s)	135, 410
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
SatI	GCNGC	6 cut(s)	285, 325, 390, 408, 411, 501
Sau3AI	GATC	6 cut(s)	3, 13, 61, 154, 290, 373
Sau96I	GGNCC	1 cut(s)	308
SchI	GAGTC	1 cut(s)	452
ScrFI	CCNGG	1 cut(s)	303
SetI	ASST	4 cut(s)	137, 203, 340, 412
SfaNI	GCATC	2 cut(s)	174, 340
SfcI	CTRYAG	2 cut(s)	247, 501
SinI	GGWCC	1 cut(s)	308
SphI	GCATGC	1 cut(s)	324
Sse9I	AATT	2 cut(s)	24, 356
SseBI	AGGCCT	1 cut(s)	10
SsiI	CCGC	1 cut(s)	353
SspI	AATATT	1 cut(s)	269
StuI	AGGCCT	1 cut(s)	10
StyD4I	CCNGG	1 cut(s)	301
TaaI	ACNGT	1 cut(s)	298
TaqI	TCGA	2 cut(s)	182, 293
TasI	AATT	2 cut(s)	24, 356
TatI	WGTACW	1 cut(s)	93
TfiI	GAWTC	2 cut(s)	179, 422
TscAI	CASTG	1 cut(s)	226
TseFI	GTSAC	1 cut(s)	455
TseI	GCWGC	6 cut(s)	284, 324, 389, 407, 410, 500
Tsp45I	GTSAC	1 cut(s)	455
TspDTI	ATGAA	1 cut(s)	206
TspRI	CASTG	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	308
XceI	RCATGY	2 cut(s)	324, 407
XmiI	GTMKAC	2 cut(s)	207, 400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.