RchiOBHm_Chr2g0114001

Glutamine amidotransferase domain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
26081683 .. 26086573
4891 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48729

Sequence Viewer

Length: 1188 bp
ATGATCCCATTGTTTTACGCTAGGCTTTTGAGAAGTTGGGCAGTGTTAAAGAGACTTACGACAGATGTACCATTCGGTGTTCTTTTGTCCGGAGGATTGGACTCGTCACTCGTTGCTGCTGTGGCTTGTCGCTATTTGGCTAAATCAGAAGCTGCACGTCAGTGGGGGTCACAATTACATACCTTTTGCGTTGGCTTAGAGGGTTCTCCAGATTTAAAAGCAGCAAGAGAAGTTGCTGATTATCTTGGAACTCATCATCACAAGTTTCACTTTACTGTTCACGAAGGCATAGATGCACTTGAAGAAGTTATCTACCATATTGAGACATATGATGTGACCACTGTCAGAGCCAGCACTCCAATGTTTCTTATGTCTCGTAAGATAAAATCTCTGGGAGTAAAAATGGTCCTTTCTGGTGAAGGTTCAGATGAAATCTTTGGTGGCTACTTGTATTTCCACAAGGCACCAAACAAGGAGGAGTTTCACCAAGAAACATGCCAGAATATTAAAGCTCTTCACCTGTGCGACTGTCTGAGGGCCAACAAATCGACTTCAGCTTGGGGTGTTGAGGCTCGAGTACCGTTTCTTGACAAAGAATTCATCAAGACTGCTATGGACATTAAACTTCCCCCCCCCCCCCCCCCCCCCCTCCAATTTTATACACAGTTCAAGTATTGTAATAAGGCTGATCTTGGGAGAATTGAGAATTGGGTCTTGTGCAAAGCATTTGATGATGATCAGAAGCCATATTTACTAAAGCACAACTTGCACAGGCAGAAGGGGCGGTTTAGTGATGGTGTCGGTTACAGCTGGATTGATGGCTTGAAAGATCATGCCAACAAACAAGTAACAGATTCAATGTTGATGAACGCAAGCTTTGTCTACCCTGAAAACACTCCGACTACAAAAGAAGGATACTACTATAGGACTATCTTTGAGAAATATTTTCCAAAGAATGCTGCGAGATCGACAGTTCCCGGTGGTCCAAGTGTGGCATGCAGCACAGCAAAAGCTGTGGAGTGGGACGCGGAATGGTCCAAGAACCCTGATCCATCTGGTCGTGCTTCACTTGGTGTACATGCAGCTGCATATGAGGAATCCAAAAATGTGAAGACTGGAAGTCTTGTGAGTGACTCTCCACAGAAACTTGTAAAAGGGGTTGCAGAGAAAGTGGCTGCAGTAGTTTGA

Protein Analysis

395

Amino Acids

44.08

Weight (kDa)

8.45

Isoelectric Point (pI)

41.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asn_synthase PF00733 13 - 158 3.3e-49 Asparagine synthase
Asn_synthase PF00733 156 - 321 2e-19 Asparagine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis pycom01g05790
rosa_chinensis RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 463
AccI GTMKAC 1 cut(s) 882
AccII CGCG 1 cut(s) 1028
AccIII TCCGGA 1 cut(s) 89
AciI CCGC 2 cut(s) 784, 1028
AclWI GGATC 1 cut(s) 1043
AcsI RAATTY 1 cut(s) 596
AcuI CTGAAG 1 cut(s) 537
AdeI CACNNNGTG 1 cut(s) 1073
AfaI GTAC 3 cut(s) 69, 579, 1077
AgsI TTSAA 4 cut(s) 302, 670, 826, 858
AhdI GACNNNNNGTC 1 cut(s) 1119
AjiI CACGTC 1 cut(s) 158
AjuI GAANNNNNNNTTGG 2 cut(s) 691, 723
AleI CACNNNNGTG 1 cut(s) 160
AluBI AGCT 7 cut(s) 152, 512, 557, 810, 876, 1013, 1085
AluI AGCT 7 cut(s) 152, 512, 557, 810, 876, 1013, 1085
Alw26I GTCTC 3 cut(s) 46, 317, 378
AlwI GGATC 1 cut(s) 1043
AlwNI CAGNNNCTG 1 cut(s) 152
Ama87I CYCGRG 1 cut(s) 573
Aor13HI TCCGGA 1 cut(s) 89
AoxI GGCC 1 cut(s) 537
ApeKI GCWGC 8 cut(s) 116, 152, 221, 959, 999, 1082, 1085, 1175
ApoI RAATTY 1 cut(s) 596
AspS9I GGNCC 4 cut(s) 406, 537, 983, 1035
AsuC2I CCSGG 1 cut(s) 978
AsuHPI GGTGA 3 cut(s) 428, 476, 509
AvaI CYCGRG 1 cut(s) 573
AvaII GGWCC 3 cut(s) 406, 983, 1035
BaeI ACNNNNGTAYC 2 cut(s) 51, 84
BanI GGYRCC 1 cut(s) 463
BbsI GAAGAC 1 cut(s) 1118
BbvI GCAGC 8 cut(s) 103, 139, 233, 946, 1011, 1072, 1094, 1162
BccI CCATC 3 cut(s) 788, 812, 1060
BciVI GTATCC 1 cut(s) 908
BclI TGATCA 1 cut(s) 736
BcnI CCSGG 1 cut(s) 978
BcoDI GTCTC 3 cut(s) 46, 317, 378
BfaI CTAG 1 cut(s) 21
BfmI CTRYAG 2 cut(s) 922, 1176
BfuI GTATCC 1 cut(s) 908
BisI GCNGC 8 cut(s) 117, 153, 222, 960, 1000, 1083, 1086, 1176
BlsI GCNGC 8 cut(s) 118, 154, 223, 961, 1001, 1084, 1087, 1177
Bme1390I CCNGG 1 cut(s) 978
Bme18I GGWCC 3 cut(s) 406, 983, 1035
BmeRI GACNNNNNGTC 1 cut(s) 1119
BmeT110I CYCGRG 1 cut(s) 573
BmgBI CACGTC 1 cut(s) 158
BmgT120I GGNCC 4 cut(s) 406, 537, 983, 1035
BmiI GGNNCC 1 cut(s) 465
BmrFI CCNGG 1 cut(s) 978
BmsI GCATC 1 cut(s) 283
BoxI GACNNNNGTC 1 cut(s) 341
BpiI GAAGAC 1 cut(s) 1118
BplI GAGNNNNNCTC 2 cut(s) 1120, 1152
BpmI CTGGAG 1 cut(s) 192
BpuMI CCSGG 1 cut(s) 978
BsaBI GATNNNNATC 1 cut(s) 735
BsaWI WCCGGW 1 cut(s) 89
Bse1I ACTGG 1 cut(s) 1120
Bse8I GATNNNNATC 1 cut(s) 735
BseAI TCCGGA 1 cut(s) 89
BseJI GATNNNNATC 1 cut(s) 735
BseMII CTCAG 1 cut(s) 524
BseNI ACTGG 1 cut(s) 1120
BseRI GAGGAG 1 cut(s) 491
BseXI GCAGC 8 cut(s) 103, 139, 233, 946, 1011, 1072, 1094, 1162
BsgI GTGCAG 1 cut(s) 138
Bsh1236I CGCG 1 cut(s) 1028
BshFI GGCC 1 cut(s) 539
BshNI GGYRCC 1 cut(s) 463
BsiHKCI CYCGRG 1 cut(s) 573
BsiSI CCGG 2 cut(s) 90, 978
BslFI GGGAC 1 cut(s) 1037
BsmAI GTCTC 3 cut(s) 46, 317, 378
BsmFI GGGAC 1 cut(s) 1037
BsmI GAATGC 1 cut(s) 961
BsnI GGCC 1 cut(s) 539
BsoBI CYCGRG 1 cut(s) 573
Bsp13I TCCGGA 1 cut(s) 89
Bsp1407I TGTACA 1 cut(s) 1075
Bsp143I GATC 6 cut(s) 3, 688, 736, 829, 965, 1048
BspACI CCGC 2 cut(s) 784, 1028
BspANI GGCC 1 cut(s) 539
BspCNI CTCAG 1 cut(s) 525
BspEI TCCGGA 1 cut(s) 89
BspFNI CGCG 1 cut(s) 1028
BspLI GGNNCC 1 cut(s) 465
BspMAI CTGCAG 1 cut(s) 1180
BspPI GGATC 1 cut(s) 1043
BspQI GCTCTTC 1 cut(s) 519
BspT107I GGYRCC 1 cut(s) 463
BsrGI TGTACA 1 cut(s) 1075
BsrI ACTGG 1 cut(s) 1120
BssMI GATC 6 cut(s) 3, 688, 736, 829, 965, 1048
Bst4CI ACNGT 6 cut(s) 277, 343, 530, 582, 666, 973
Bst6I CTCTTC 1 cut(s) 519
BstAPI GCANNNNNTGC 1 cut(s) 766
BstAUI TGTACA 1 cut(s) 1075
BstC8I GCNNGC 3 cut(s) 352, 874, 997
BstDEI CTNAG 2 cut(s) 196, 533
BstFNI CGCG 1 cut(s) 1028
BstKTI GATC 6 cut(s) 6, 691, 739, 832, 968, 1051
BstMAI GTCTC 3 cut(s) 46, 317, 378
BstMBI GATC 6 cut(s) 3, 688, 736, 829, 965, 1048
BstMWI GCNNNNNNNGC 3 cut(s) 122, 766, 781
BstNSI RCATGY 3 cut(s) 498, 999, 1082
BstPAI GACNNNNGTC 1 cut(s) 341
BstSCI CCNGG 1 cut(s) 976
BstSFI CTRYAG 2 cut(s) 922, 1176
BstUI CGCG 1 cut(s) 1028
BstV1I GCAGC 8 cut(s) 103, 139, 233, 946, 1011, 1072, 1094, 1162
BstV2I GAAGAC 1 cut(s) 1118
BsuI GTATCC 1 cut(s) 908
BsuRI GGCC 1 cut(s) 539
BtrI CACGTC 1 cut(s) 158
BtsI GCAGTG 1 cut(s) 48
BtsIMutI CAGTG 3 cut(s) 48, 167, 339
Cac8I GCNNGC 3 cut(s) 352, 874, 997
CaiI CAGNNNCTG 1 cut(s) 152
Cfr13I GGNCC 4 cut(s) 406, 537, 983, 1035
CseI GACGC 1 cut(s) 1034
Csp6I GTAC 3 cut(s) 68, 578, 1076
CspCI CAANNNNNGTGG 2 cut(s) 996, 1031
CviAII CATG 4 cut(s) 495, 833, 996, 1079
CviQI GTAC 3 cut(s) 68, 578, 1076
DdeI CTNAG 2 cut(s) 196, 533
DpnI GATC 6 cut(s) 5, 690, 738, 831, 967, 1050
DpnII GATC 6 cut(s) 3, 688, 736, 829, 965, 1048
DraI TTTAAA 1 cut(s) 216
DraIII CACNNNGTG 1 cut(s) 1073
DriI GACNNNNNGTC 1 cut(s) 1119
Eam1104I CTCTTC 1 cut(s) 519
Eam1105I GACNNNNNGTC 1 cut(s) 1119
EarI CTCTTC 1 cut(s) 519
Eco47I GGWCC 3 cut(s) 406, 983, 1035
Eco57I CTGAAG 1 cut(s) 537
Eco88I CYCGRG 1 cut(s) 573
EcoRI GAATTC 1 cut(s) 596
FaeI CATG 4 cut(s) 498, 836, 999, 1082
FalI AAGNNNNNCTT 4 cut(s) 254, 286, 749, 781
FaqI GGGAC 1 cut(s) 1037
FatI CATG 4 cut(s) 494, 832, 995, 1078
FauNDI CATATG 2 cut(s) 328, 1090
FbaI TGATCA 1 cut(s) 736
FblI GTMKAC 1 cut(s) 882
Fnu4HI GCNGC 8 cut(s) 117, 153, 222, 960, 1000, 1083, 1086, 1176
Fsp4HI GCNGC 8 cut(s) 117, 153, 222, 960, 1000, 1083, 1086, 1176
FspBI CTAG 1 cut(s) 21
GluI GCNGC 8 cut(s) 117, 153, 222, 960, 1000, 1083, 1086, 1176
GsuI CTGGAG 1 cut(s) 192
HaeIII GGCC 1 cut(s) 539
HapII CCGG 2 cut(s) 90, 978
HgaI GACGC 1 cut(s) 1034
Hin1II CATG 4 cut(s) 498, 836, 999, 1082
HindIII AAGCTT 1 cut(s) 874
HinfI GANTC 4 cut(s) 101, 854, 1097, 1133
HpaII CCGG 2 cut(s) 90, 978
HphI GGTGA 3 cut(s) 428, 476, 509
Hpy166II GTNNAC 3 cut(s) 280, 883, 1076
Hpy188I TCNGA 6 cut(s) 148, 347, 427, 534, 741, 900
Hpy188III TCNNGA 5 cut(s) 90, 209, 281, 587, 604
Hpy8I GTNNAC 3 cut(s) 280, 883, 1076
HpyAV CCTTC 4 cut(s) 278, 413, 772, 905
HpyCH4III ACNGT 6 cut(s) 277, 343, 530, 582, 666, 973
HpyCH4IV ACGT 1 cut(s) 157
HpyCH4V TGCA 9 cut(s) 155, 296, 720, 769, 999, 1082, 1088, 1163, 1178
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 766, 781
HpyF3I CTNAG 2 cut(s) 196, 533
HpySE526I ACGT 1 cut(s) 157
Hsp92II CATG 4 cut(s) 498, 836, 999, 1082
Kpn2I TCCGGA 1 cut(s) 89
Ksp22I TGATCA 1 cut(s) 736
Kzo9I GATC 6 cut(s) 3, 688, 736, 829, 965, 1048
LguI GCTCTTC 1 cut(s) 519
Lsp1109I GCAGC 8 cut(s) 103, 139, 233, 946, 1011, 1072, 1094, 1162
LweI GCATC 1 cut(s) 283
MaeI CTAG 1 cut(s) 21
MaeII ACGT 1 cut(s) 157
MaeIII GTNAC 6 cut(s) 105, 168, 334, 803, 847, 1130
MalI GATC 6 cut(s) 5, 690, 738, 831, 967, 1050
MboI GATC 6 cut(s) 3, 688, 736, 829, 965, 1048
MboII GAAGA 3 cut(s) 314, 506, 1123
MluCI AATT 5 cut(s) 173, 596, 653, 699, 706
MlyI GAGTC 2 cut(s) 95, 1127
MmeI TCCRAC 1 cut(s) 923
MnlI CCTC 7 cut(s) 86, 193, 469, 528, 562, 659, 1087
MroI TCCGGA 1 cut(s) 89
MseI TTAA 4 cut(s) 47, 215, 507, 621
MslI CAYNNNNRTG 2 cut(s) 160, 359
MspA1I CMGCKG 2 cut(s) 810, 1085
MspI CCGG 2 cut(s) 90, 978
MspR9I CCNGG 1 cut(s) 978
Mva1269I GAATGC 1 cut(s) 961
MvnI CGCG 1 cut(s) 1028
MwoI GCNNNNNNNGC 3 cut(s) 122, 766, 781
NciI CCSGG 1 cut(s) 978
NdeI CATATG 2 cut(s) 328, 1090
NdeII GATC 6 cut(s) 3, 688, 736, 829, 965, 1048
NlaIII CATG 4 cut(s) 498, 836, 999, 1082
NlaIV GGNNCC 1 cut(s) 465
NmuCI GTSAC 4 cut(s) 105, 168, 334, 1130
NspI RCATGY 3 cut(s) 498, 999, 1082
OliI CACNNNNGTG 1 cut(s) 160
PaeI GCATGC 1 cut(s) 999
PaeR7I CTCGAG 1 cut(s) 573
PciSI GCTCTTC 1 cut(s) 519
PctI GAATGC 1 cut(s) 961
PfeI GAWTC 2 cut(s) 854, 1097
PkrI GCNGC 8 cut(s) 118, 154, 223, 961, 1001, 1084, 1087, 1177
PleI GAGTC 2 cut(s) 95, 1127
PpsI GAGTC 2 cut(s) 95, 1127
PshAI GACNNNNGTC 1 cut(s) 341
PspN4I GGNNCC 1 cut(s) 465
PspPI GGNCC 4 cut(s) 406, 537, 983, 1035
PspXI VCTCGAGB 1 cut(s) 573
PstI CTGCAG 1 cut(s) 1180
PstNI CAGNNNCTG 1 cut(s) 152
PvuII CAGCTG 2 cut(s) 810, 1085
RsaI GTAC 3 cut(s) 69, 579, 1077
RsaNI GTAC 3 cut(s) 68, 578, 1076
RseI CAYNNNNRTG 2 cut(s) 160, 359
SapI GCTCTTC 1 cut(s) 519
SaqAI TTAA 4 cut(s) 47, 215, 507, 621
SatI GCNGC 8 cut(s) 117, 153, 222, 960, 1000, 1083, 1086, 1176
Sau3AI GATC 6 cut(s) 3, 688, 736, 829, 965, 1048
Sau96I GGNCC 4 cut(s) 406, 537, 983, 1035
SchI GAGTC 2 cut(s) 95, 1127
ScrFI CCNGG 1 cut(s) 978
SfaNI GCATC 1 cut(s) 283
SfcI CTRYAG 2 cut(s) 922, 1176
Sfr274I CTCGAG 1 cut(s) 573
SinI GGWCC 3 cut(s) 406, 983, 1035
SlaI CTCGAG 1 cut(s) 573
SmiMI CAYNNNNRTG 2 cut(s) 160, 359
SmlI CTYRAG 1 cut(s) 573
SmoI CTYRAG 1 cut(s) 573
SphI GCATGC 1 cut(s) 999
Sse9I AATT 5 cut(s) 173, 596, 653, 699, 706
SsiI CCGC 2 cut(s) 784, 1028
SspI AATATT 2 cut(s) 505, 944
SspMI CTAG 1 cut(s) 21
StyD4I CCNGG 1 cut(s) 976
TaaI ACNGT 6 cut(s) 277, 343, 530, 582, 666, 973
TaiI ACGT 1 cut(s) 160
TaqI TCGA 3 cut(s) 548, 574, 968
TasI AATT 5 cut(s) 173, 596, 653, 699, 706
TatI WGTACW 1 cut(s) 1075
TfiI GAWTC 2 cut(s) 854, 1097
Tru1I TTAA 4 cut(s) 47, 215, 507, 621
Tru9I TTAA 4 cut(s) 47, 215, 507, 621
TscAI CASTG 3 cut(s) 48, 167, 346
TseFI GTSAC 4 cut(s) 105, 168, 334, 1130
TseI GCWGC 8 cut(s) 116, 152, 221, 959, 999, 1082, 1085, 1175
Tsp45I GTSAC 4 cut(s) 105, 168, 334, 1130
TspDTI ATGAA 3 cut(s) 444, 589, 881
TspRI CASTG 3 cut(s) 48, 167, 346
VpaK11BI GGWCC 3 cut(s) 406, 983, 1035
XapI RAATTY 1 cut(s) 596
XceI RCATGY 3 cut(s) 498, 999, 1082
XhoI CTCGAG 1 cut(s) 573
XmiI GTMKAC 1 cut(s) 882
XspI CTAG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.