Rmu_sc0001699.1_g000005

Glutamine amidotransferase domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001699.1
Physical Location & Seq
Reverse (-)
31353 .. 33985
2633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001699.1_g000005.1.cds

Sequence Viewer

Length: 660 bp
atgaaaatttgtgatgagcccctatatgcaaagcacacatgtaaaggacatttgaagactggagctttgaacttcaggccatttgaagatttgaacttcaggccaaatggaaaagactgggcaatcacatatttccaacctttgaagagagacaactctcaggggccaagcggtcacgcattatcgaactctcacgcgggtggcggcatcgcggtcctgattgaagtgggctgcattgccgtggggattgttaccttgctcatcaacgattggctattgtggaccctgcctcaggggatcagccactctacaacgaggacaagaccgtcattgtcacggtactctctttcacctttgcattctaaaatttcaattcggatgaagattagatcaatttggtttgcttcagaaatgaaagctgtaagtgatgattgtgaaagattcatatcttttcctcttgggcatttatactctagcaaacaaggagggctgagaaggtcgtacaatccacaatggtttttggagaagataccatcgactccttatgatcccattgttttacgtgaggcttttgagaaggtatgcattgatgtgtaccacttacaatcctacttcttttctttttgtgttttgtatatgttcccactctttatcgattag

Protein Analysis

219

Amino Acids

25.0

Weight (kDa)

9.01

Isoelectric Point (pI)

41.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis pycom01g05790
rosa_chinensis RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 325
AccII CGCG 2 cut(s) 197, 212
AciI CCGC 4 cut(s) 171, 197, 204, 212
AclWI GGATC 2 cut(s) 305, 542
AcsI RAATTY 2 cut(s) 6, 366
AcuI CTGAAG 3 cut(s) 58, 82, 390
AfaI GTAC 3 cut(s) 341, 503, 596
AfiI CCNNNNNNNGG 1 cut(s) 292
AflIII ACRYGT 1 cut(s) 38
AgsI TTSAA 7 cut(s) 55, 70, 86, 94, 145, 224, 372
AleI CACNNNNGTG 1 cut(s) 198
AluBI AGCT 2 cut(s) 65, 419
AluI AGCT 2 cut(s) 65, 419
Alw26I GTCTC 1 cut(s) 144
AlwI GGATC 2 cut(s) 305, 542
AoxI GGCC 3 cut(s) 77, 101, 164
ApeKI GCWGC 1 cut(s) 231
ApoI RAATTY 2 cut(s) 6, 366
ArsI GACNNNNNNTTYG 2 cut(s) 49, 81
AspS9I GGNCC 3 cut(s) 164, 214, 282
AsuHPI GGTGA 1 cut(s) 342
AvaII GGWCC 2 cut(s) 214, 282
AxyI CCTNAGG 1 cut(s) 291
BanII GRGCYC 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 62
BbvI GCAGC 1 cut(s) 218
BccI CCATC 1 cut(s) 541
BceAI ACGGC 1 cut(s) 224
BcoDI GTCTC 1 cut(s) 144
BfaI CTAG 1 cut(s) 474
BisI GCNGC 2 cut(s) 205, 232
BlsI GCNGC 2 cut(s) 206, 233
Bme18I GGWCC 2 cut(s) 214, 282
BmgT120I GGNCC 3 cut(s) 164, 214, 282
BmiI GGNNCC 2 cut(s) 165, 284
BmrI ACTGGG 1 cut(s) 127
BmsI GCATC 1 cut(s) 216
BmuI ACTGGG 1 cut(s) 127
BpiI GAAGAC 1 cut(s) 62
BpmI CTGGAG 1 cut(s) 81
Bsa29I ATCGAT 1 cut(s) 654
BsaAI YACGTR 1 cut(s) 563
BsaBI GATNNNNATC 1 cut(s) 445
BsaJI CCNNGG 1 cut(s) 240
Bsc4I CCNNNNNNNGG 1 cut(s) 292
Bse1I ACTGG 2 cut(s) 64, 122
Bse21I CCTNAGG 1 cut(s) 291
Bse3DI GCAATG 1 cut(s) 234
Bse8I GATNNNNATC 1 cut(s) 445
BseCI ATCGAT 1 cut(s) 654
BseDI CCNNGG 1 cut(s) 240
BseGI GGATG 1 cut(s) 384
BseJI GATNNNNATC 1 cut(s) 445
BseLI CCNNNNNNNGG 1 cut(s) 292
BseMI GCAATG 1 cut(s) 234
BseMII CTCAG 3 cut(s) 173, 305, 482
BseNI ACTGG 2 cut(s) 64, 122
BseXI GCAGC 1 cut(s) 218
Bsh1236I CGCG 2 cut(s) 197, 212
BshFI GGCC 3 cut(s) 79, 103, 166
BshVI ATCGAT 1 cut(s) 654
BslI CCNNNNNNNGG 1 cut(s) 292
BsmAI GTCTC 1 cut(s) 144
BsmI GAATGC 1 cut(s) 358
BsnI GGCC 3 cut(s) 79, 103, 166
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 3 cut(s) 297, 389, 547
BspACI CCGC 4 cut(s) 171, 197, 204, 212
BspANI GGCC 3 cut(s) 79, 103, 166
BspCNI CTCAG 3 cut(s) 172, 304, 483
BspDI ATCGAT 1 cut(s) 654
BspFNI CGCG 2 cut(s) 197, 212
BspLI GGNNCC 2 cut(s) 165, 284
BspPI GGATC 2 cut(s) 305, 542
BsrDI GCAATG 1 cut(s) 234
BsrI ACTGG 2 cut(s) 64, 122
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 3 cut(s) 297, 389, 547
Bst4CI ACNGT 2 cut(s) 327, 339
Bst6I CTCTTC 1 cut(s) 140
BstBAI YACGTR 1 cut(s) 563
BstDEI CTNAG 3 cut(s) 159, 291, 491
BstDSI CCRYGG 1 cut(s) 240
BstENI CCTNNNNNAGG 1 cut(s) 290
BstF5I GGATG 1 cut(s) 384
BstFNI CGCG 2 cut(s) 197, 212
BstKTI GATC 3 cut(s) 300, 392, 550
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 3 cut(s) 297, 389, 547
BstNSI RCATGY 1 cut(s) 42
BstUI CGCG 2 cut(s) 197, 212
BstV1I GCAGC 1 cut(s) 218
BstV2I GAAGAC 1 cut(s) 62
Bsu15I ATCGAT 1 cut(s) 654
Bsu36I CCTNAGG 1 cut(s) 291
BsuRI GGCC 3 cut(s) 79, 103, 166
BsuTUI ATCGAT 1 cut(s) 654
BtgI CCRYGG 1 cut(s) 240
BtgZI GCGATG 1 cut(s) 193
BtsCI GGATG 1 cut(s) 384
Cfr13I GGNCC 3 cut(s) 164, 214, 282
ClaI ATCGAT 1 cut(s) 654
Csp6I GTAC 3 cut(s) 340, 502, 595
CviAII CATG 1 cut(s) 39
CviQI GTAC 3 cut(s) 340, 502, 595
DdeI CTNAG 3 cut(s) 159, 291, 491
DpnI GATC 3 cut(s) 299, 391, 549
DpnII GATC 3 cut(s) 297, 389, 547
DrdI GACNNNNNNGTC 1 cut(s) 325
DseDI GACNNNNNNGTC 1 cut(s) 325
Eam1104I CTCTTC 1 cut(s) 140
EarI CTCTTC 1 cut(s) 140
Eco24I GRGCYC 1 cut(s) 21
Eco47I GGWCC 2 cut(s) 214, 282
Eco57I CTGAAG 3 cut(s) 58, 82, 390
Eco81I CCTNAGG 1 cut(s) 291
EcoNI CCTNNNNNAGG 1 cut(s) 290
EcoT22I ATGCAT 1 cut(s) 587
EcoT38I GRGCYC 1 cut(s) 21
FaeI CATG 1 cut(s) 42
FatI CATG 1 cut(s) 38
FauI CCCGC 1 cut(s) 190
Fnu4HI GCNGC 2 cut(s) 205, 232
FokI GGATG 1 cut(s) 391
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 2 cut(s) 205, 232
FspBI CTAG 1 cut(s) 474
GluI GCNGC 2 cut(s) 205, 232
GsuI CTGGAG 1 cut(s) 81
HaeIII GGCC 3 cut(s) 79, 103, 166
Hin1II CATG 1 cut(s) 42
HinfI GANTC 2 cut(s) 441, 538
HphI GGTGA 1 cut(s) 342
Hpy166II GTNNAC 2 cut(s) 282, 595
Hpy188I TCNGA 2 cut(s) 378, 409
Hpy188III TCNNGA 1 cut(s) 217
Hpy8I GTNNAC 2 cut(s) 282, 595
HpyAV CCTTC 2 cut(s) 489, 571
HpyCH4III ACNGT 2 cut(s) 327, 339
HpyCH4IV ACGT 1 cut(s) 562
HpyCH4V TGCA 4 cut(s) 29, 234, 358, 585
HpyF3I CTNAG 3 cut(s) 159, 291, 491
HpySE526I ACGT 1 cut(s) 562
Hsp92II CATG 1 cut(s) 42
Kzo9I GATC 3 cut(s) 297, 389, 547
LmnI GCTCC 1 cut(s) 62
LpnPI CCDG 8 cut(s) 45, 61, 85, 103, 146, 230, 278, 299
Lsp1109I GCAGC 1 cut(s) 218
LweI GCATC 1 cut(s) 216
MaeI CTAG 1 cut(s) 474
MaeII ACGT 1 cut(s) 562
MaeIII GTNAC 3 cut(s) 173, 250, 333
MalI GATC 3 cut(s) 299, 391, 549
MboI GATC 3 cut(s) 297, 389, 547
MboII GAAGA 5 cut(s) 67, 98, 157, 394, 538
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 4 cut(s) 6, 366, 372, 393
MlyI GAGTC 1 cut(s) 532
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 5 cut(s) 300, 309, 465, 479, 559
Mph1103I ATGCAT 1 cut(s) 587
MslI CAYNNNNRTG 3 cut(s) 198, 239, 590
Mva1269I GAATGC 1 cut(s) 358
MvnI CGCG 2 cut(s) 197, 212
NdeII GATC 3 cut(s) 297, 389, 547
NlaIII CATG 1 cut(s) 42
NlaIV GGNNCC 2 cut(s) 165, 284
NmuCI GTSAC 2 cut(s) 173, 333
NsiI ATGCAT 1 cut(s) 587
NspI RCATGY 1 cut(s) 42
OliI CACNNNNGTG 1 cut(s) 198
PciI ACATGT 1 cut(s) 38
PctI GAATGC 1 cut(s) 358
PfeI GAWTC 1 cut(s) 441
PkrI GCNGC 2 cut(s) 206, 233
PleI GAGTC 1 cut(s) 532
PpsI GAGTC 1 cut(s) 532
Ppu21I YACGTR 1 cut(s) 563
PscI ACATGT 1 cut(s) 38
PspN4I GGNNCC 2 cut(s) 165, 284
PspPI GGNCC 3 cut(s) 164, 214, 282
RsaI GTAC 3 cut(s) 341, 503, 596
RsaNI GTAC 3 cut(s) 340, 502, 595
RseI CAYNNNNRTG 3 cut(s) 198, 239, 590
SatI GCNGC 2 cut(s) 205, 232
Sau3AI GATC 3 cut(s) 297, 389, 547
Sau96I GGNCC 3 cut(s) 164, 214, 282
SchI GAGTC 1 cut(s) 532
SduI GDGCHC 1 cut(s) 21
SetI ASST 8 cut(s) 67, 142, 257, 355, 421, 500, 565, 582
SfaNI GCATC 1 cut(s) 216
SinI GGWCC 2 cut(s) 214, 282
SmiMI CAYNNNNRTG 3 cut(s) 198, 239, 590
Sse9I AATT 4 cut(s) 6, 366, 372, 393
SsiI CCGC 4 cut(s) 171, 197, 204, 212
SspMI CTAG 1 cut(s) 474
TaaI ACNGT 2 cut(s) 327, 339
TaiI ACGT 1 cut(s) 565
TaqI TCGA 3 cut(s) 185, 536, 654
TasI AATT 4 cut(s) 6, 366, 372, 393
TauI GCSGC 1 cut(s) 207
TfiI GAWTC 1 cut(s) 441
TseFI GTSAC 2 cut(s) 173, 333
TseI GCWGC 1 cut(s) 231
Tsp45I GTSAC 2 cut(s) 173, 333
TspDTI ATGAA 4 cut(s) 17, 395, 428, 433
VpaK11BI GGWCC 2 cut(s) 214, 282
XagI CCTNNNNNAGG 1 cut(s) 290
XapI RAATTY 2 cut(s) 6, 366
XceI RCATGY 1 cut(s) 42
XspI CTAG 1 cut(s) 474
Zsp2I ATGCAT 1 cut(s) 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.