Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009639.1

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Reverse (-)

37655 .. 42591

Gene Structure 4937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009639.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

atgcgtgcaggagggctgagaaggtggtacaatccacaatggtttttggagaagataccatcgactccttatgatcccattgttttacgcgaggcttttgaaaaggctgtgttaaagagacttatgacagatgtaccattcggtgttcttttgtctggaggattggactcatcactcgttgctgctgtggcttgtcgctatttggctaaatcagaagcagcacgtcagtgggggtcacaattacataccttttgtgttggcttggagggttctccagatttgaaagcagcaagagaagttgcagattatcttggaactcatcatcacgagtttcactttactgttcgggaaggcatagatgcacttgaagaagttatctaccatattgagacatatgatgtgatcactgtcagagccagcactccaatgtttcttatgtctcgtaaaattaaatctctgggagtaaaaatggtcctttctggtgaaggttcggatgaaatctttggtggctacttgtatttccacaaggcaccaaacaaggaggagtttcaccaagaaacatgccagaagattaaaggtcttcatctgtttgactgtctgagggacaacaaatcgacatcagcttggggtgttgaggctcgtgtaccgtttcttgacaaagaatttatcaagactgctatggatattgatccagaatggaaaatgatcaggcctgatcttggaagaattgagaagtgggtcttaagcaaagcatttgatgatgatcagaagccatatttaccaaagcacatcttatacaggcagaaggagcagtttagtgatggtgtcggttacagctggattgacgggttgaaagatcatgcaaacaaacaaaatgctgcgagatcgacagttcctggtggtccaagtgtggcatgcagcacagcaaaaactgtggagtgggatgcagaatggtccaagaaccccgattcatctggtcgtgctgcacttggtatacatgcagctgcgtatgaggaatccaaagatgtaaagactggaaaccttgtggttgactctccacagaaacttgtaaaagtggttgcagagaaagtggctgcagtagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

368

Amino Acids

41.26

Weight (kDa)

6.65

Isoelectric Point (pI)

42.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	529
AccI	GTMKAC	1 cut(s)	994
AccII	CGCG	1 cut(s)	90
AclWI	GGATC	2 cut(s)	68, 683
AcsI	RAATTY	1 cut(s)	662
AfaI	GTAC	3 cut(s)	29, 135, 645
AfiI	CCNNNNNNNGG	1 cut(s)	719
AflII	CTTAAG	1 cut(s)	742
AgsI	TTSAA	4 cut(s)	101, 283, 368, 853
AjiI	CACGTC	1 cut(s)	224
AjnI	CCWGG	1 cut(s)	895
AleI	CACNNNNGTG	1 cut(s)	226
AluBI	AGCT	3 cut(s)	623, 837, 1004
AluI	AGCT	3 cut(s)	623, 837, 1004
Alw26I	GTCTC	3 cut(s)	112, 383, 444
AlwI	GGATC	2 cut(s)	68, 683
AlwNI	CAGNNNCTG	1 cut(s)	896
AoxI	GGCC	1 cut(s)	710
ApeKI	GCWGC	9 cut(s)	182, 218, 287, 878, 918, 983, 1001, 1004, 1094
ApoI	RAATTY	1 cut(s)	662
AspS9I	GGNCC	3 cut(s)	472, 902, 954
AsuHPI	GGTGA	2 cut(s)	494, 542
AvaII	GGWCC	3 cut(s)	472, 902, 954
BaeI	ACNNNNGTAYC	2 cut(s)	117, 150
BanI	GGYRCC	1 cut(s)	529
BauI	CACGAG	2 cut(s)	326, 639
BbsI	GAAGAC	1 cut(s)	572
BbvI	GCAGC	9 cut(s)	169, 230, 299, 865, 930, 970, 991, 1013, 1081
BccI	CCATC	2 cut(s)	67, 815
BciT130I	CCWGG	1 cut(s)	897
BclI	TGATCA	3 cut(s)	402, 705, 763
BcoDI	GTCTC	3 cut(s)	112, 383, 444
BfmI	CTRYAG	1 cut(s)	1095
BfrI	CTTAAG	1 cut(s)	742
BisI	GCNGC	9 cut(s)	183, 219, 288, 879, 919, 984, 1002, 1005, 1095
BlsI	GCNGC	9 cut(s)	184, 220, 289, 880, 920, 985, 1003, 1006, 1096
Bme1390I	CCNGG	1 cut(s)	897
Bme18I	GGWCC	3 cut(s)	472, 902, 954
BmgBI	CACGTC	1 cut(s)	224
BmgT120I	GGNCC	3 cut(s)	472, 902, 954
BmiI	GGNNCC	1 cut(s)	531
BmrFI	CCNGG	1 cut(s)	897
BmsI	GCATC	2 cut(s)	349, 934
BpiI	GAAGAC	1 cut(s)	572
BpmI	CTGGAG	2 cut(s)	177, 258
BsaBI	GATNNNNATC	2 cut(s)	687, 762
Bsc4I	CCNNNNNNNGG	1 cut(s)	719
Bse1I	ACTGG	1 cut(s)	1039
Bse8I	GATNNNNATC	2 cut(s)	687, 762
BseBI	CCWGG	1 cut(s)	897
BseGI	GGATG	2 cut(s)	499, 949
BseJI	GATNNNNATC	2 cut(s)	687, 762
BseLI	CCNNNNNNNGG	1 cut(s)	719
BseMII	CTCAG	2 cut(s)	8, 590
BseNI	ACTGG	1 cut(s)	1039
BseRI	GAGGAG	1 cut(s)	557
BseXI	GCAGC	9 cut(s)	169, 230, 299, 865, 930, 970, 991, 1013, 1081
BsgI	GTGCAG	2 cut(s)	27, 969
Bsh1236I	CGCG	1 cut(s)	90
BshFI	GGCC	1 cut(s)	712
BshNI	GGYRCC	1 cut(s)	529
BslFI	GGGAC	1 cut(s)	617
BslI	CCNNNNNNNGG	1 cut(s)	719
BsmAI	GTCTC	3 cut(s)	112, 383, 444
BsmFI	GGGAC	1 cut(s)	617
BsnI	GGCC	1 cut(s)	712
Bsp143I	GATC	8 cut(s)	73, 402, 688, 705, 715, 763, 856, 884
BspANI	GGCC	1 cut(s)	712
BspCNI	CTCAG	2 cut(s)	9, 591
BspFNI	CGCG	1 cut(s)	90
BspLI	GGNNCC	1 cut(s)	531
BspMAI	CTGCAG	1 cut(s)	1099
BspPI	GGATC	2 cut(s)	68, 683
BspT107I	GGYRCC	1 cut(s)	529
BspTI	CTTAAG	1 cut(s)	742
BsrI	ACTGG	1 cut(s)	1039
BssMI	GATC	8 cut(s)	73, 402, 688, 705, 715, 763, 856, 884
BssNAI	GTATAC	1 cut(s)	995
BssSI	CACGAG	2 cut(s)	326, 639
Bst1107I	GTATAC	1 cut(s)	995
Bst2BI	CACGAG	2 cut(s)	326, 639
Bst2UI	CCWGG	1 cut(s)	897
Bst4CI	ACNGT	6 cut(s)	343, 409, 596, 648, 892, 934
BstAFI	CTTAAG	1 cut(s)	742
BstC8I	GCNNGC	3 cut(s)	6, 418, 916
BstDEI	CTNAG	2 cut(s)	17, 599
BstF5I	GGATG	2 cut(s)	499, 949
BstFNI	CGCG	1 cut(s)	90
BstKTI	GATC	8 cut(s)	76, 405, 691, 708, 718, 766, 859, 887
BstMAI	GTCTC	3 cut(s)	112, 383, 444
BstMBI	GATC	8 cut(s)	73, 402, 688, 705, 715, 763, 856, 884
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 808
BstNI	CCWGG	1 cut(s)	897
BstNSI	RCATGY	3 cut(s)	564, 918, 1001
BstSCI	CCNGG	1 cut(s)	895
BstSFI	CTRYAG	1 cut(s)	1095
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	9 cut(s)	169, 230, 299, 865, 930, 970, 991, 1013, 1081
BstV2I	GAAGAC	1 cut(s)	572
BstZ17I	GTATAC	1 cut(s)	995
BsuRI	GGCC	1 cut(s)	712
BtrI	CACGTC	1 cut(s)	224
BtsCI	GGATG	2 cut(s)	499, 949
BtsIMutI	CAGTG	2 cut(s)	233, 405
Cac8I	GCNNGC	3 cut(s)	6, 418, 916
CaiI	CAGNNNCTG	1 cut(s)	896
Cfr13I	GGNCC	3 cut(s)	472, 902, 954
Csp6I	GTAC	3 cut(s)	28, 134, 644
CspCI	CAANNNNNGTGG	2 cut(s)	915, 950
CviAII	CATG	4 cut(s)	561, 860, 915, 998
CviQI	GTAC	3 cut(s)	28, 134, 644
DdeI	CTNAG	2 cut(s)	17, 599
DpnI	GATC	8 cut(s)	75, 404, 690, 707, 717, 765, 858, 886
DpnII	GATC	8 cut(s)	73, 402, 688, 705, 715, 763, 856, 884
Eco147I	AGGCCT	1 cut(s)	712
Eco47I	GGWCC	3 cut(s)	472, 902, 954
EcoRII	CCWGG	1 cut(s)	895
FaeI	CATG	4 cut(s)	564, 863, 918, 1001
FalI	AAGNNNNNCTT	4 cut(s)	725, 757, 776, 808
FaqI	GGGAC	1 cut(s)	617
FatI	CATG	4 cut(s)	560, 859, 914, 997
FauNDI	CATATG	1 cut(s)	394
FbaI	TGATCA	3 cut(s)	402, 705, 763
FblI	GTMKAC	1 cut(s)	994
Fnu4HI	GCNGC	9 cut(s)	183, 219, 288, 879, 919, 984, 1002, 1005, 1095
FokI	GGATG	2 cut(s)	506, 956
Fsp4HI	GCNGC	9 cut(s)	183, 219, 288, 879, 919, 984, 1002, 1005, 1095
GluI	GCNGC	9 cut(s)	183, 219, 288, 879, 919, 984, 1002, 1005, 1095
GsuI	CTGGAG	2 cut(s)	177, 258
HaeIII	GGCC	1 cut(s)	712
Hin1II	CATG	4 cut(s)	564, 863, 918, 1001
HincII	GTYRAC	1 cut(s)	1051
HindII	GTYRAC	1 cut(s)	1051
HinfI	GANTC	5 cut(s)	64, 167, 968, 1016, 1052
HphI	GGTGA	2 cut(s)	494, 542
Hpy166II	GTNNAC	3 cut(s)	644, 995, 1051
Hpy188I	TCNGA	5 cut(s)	214, 413, 493, 600, 768
Hpy188III	TCNNGA	7 cut(s)	156, 275, 326, 347, 653, 670, 692
Hpy8I	GTNNAC	3 cut(s)	644, 995, 1051
HpyAV	CCTTC	4 cut(s)	15, 344, 479, 799
HpyCH4III	ACNGT	6 cut(s)	343, 409, 596, 648, 892, 934
HpyCH4IV	ACGT	1 cut(s)	223
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 808
HpyF3I	CTNAG	2 cut(s)	17, 599
HpySE526I	ACGT	1 cut(s)	223
Hsp92II	CATG	4 cut(s)	564, 863, 918, 1001
Ksp22I	TGATCA	3 cut(s)	402, 705, 763
Kzo9I	GATC	8 cut(s)	73, 402, 688, 705, 715, 763, 856, 884
LmnI	GCTCC	1 cut(s)	808
Lsp1109I	GCAGC	9 cut(s)	169, 230, 299, 865, 930, 970, 991, 1013, 1081
LweI	GCATC	2 cut(s)	349, 934
MaeII	ACGT	1 cut(s)	223
MaeIII	GTNAC	2 cut(s)	234, 830
MalI	GATC	8 cut(s)	75, 404, 690, 707, 717, 765, 858, 886
MboI	GATC	8 cut(s)	73, 402, 688, 705, 715, 763, 856, 884
MboII	GAAGA	5 cut(s)	64, 380, 572, 580, 735
MluCI	AATT	4 cut(s)	239, 447, 662, 726
MlyI	GAGTC	3 cut(s)	58, 161, 1046
MnlI	CCTC	8 cut(s)	5, 85, 152, 259, 535, 594, 628, 1006
MseI	TTAA	4 cut(s)	113, 450, 573, 743
MslI	CAYNNNNRTG	2 cut(s)	226, 425
MspA1I	CMGCKG	2 cut(s)	837, 1004
MspCI	CTTAAG	1 cut(s)	742
MspR9I	CCNGG	1 cut(s)	897
MvaI	CCWGG	1 cut(s)	897
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	2 cut(s)	188, 808
NdeI	CATATG	1 cut(s)	394
NdeII	GATC	8 cut(s)	73, 402, 688, 705, 715, 763, 856, 884
NlaIII	CATG	4 cut(s)	564, 863, 918, 1001
NlaIV	GGNNCC	1 cut(s)	531
NmuCI	GTSAC	1 cut(s)	234
NspI	RCATGY	3 cut(s)	564, 918, 1001
OliI	CACNNNNGTG	1 cut(s)	226
PaeI	GCATGC	1 cut(s)	918
PceI	AGGCCT	1 cut(s)	712
PfeI	GAWTC	2 cut(s)	968, 1016
PkrI	GCNGC	9 cut(s)	184, 220, 289, 880, 920, 985, 1003, 1006, 1096
PleI	GAGTC	3 cut(s)	58, 161, 1046
PpsI	GAGTC	3 cut(s)	58, 161, 1046
Psp6I	CCWGG	1 cut(s)	895
PspGI	CCWGG	1 cut(s)	895
PspN4I	GGNNCC	1 cut(s)	531
PspPI	GGNCC	3 cut(s)	472, 902, 954
PstI	CTGCAG	1 cut(s)	1099
PstNI	CAGNNNCTG	1 cut(s)	896
PvuII	CAGCTG	2 cut(s)	837, 1004
RsaI	GTAC	3 cut(s)	29, 135, 645
RsaNI	GTAC	3 cut(s)	28, 134, 644
RseI	CAYNNNNRTG	2 cut(s)	226, 425
SaqAI	TTAA	4 cut(s)	113, 450, 573, 743
SatI	GCNGC	9 cut(s)	183, 219, 288, 879, 919, 984, 1002, 1005, 1095
Sau3AI	GATC	8 cut(s)	73, 402, 688, 705, 715, 763, 856, 884
Sau96I	GGNCC	3 cut(s)	472, 902, 954
SchI	GAGTC	3 cut(s)	58, 161, 1046
ScrFI	CCNGG	1 cut(s)	897
SetI	ASST	9 cut(s)	26, 226, 251, 490, 580, 625, 839, 1006, 1044
SfaNI	GCATC	2 cut(s)	349, 934
SfcI	CTRYAG	1 cut(s)	1095
SinI	GGWCC	3 cut(s)	472, 902, 954
SmiMI	CAYNNNNRTG	2 cut(s)	226, 425
SmlI	CTYRAG	1 cut(s)	742
SmoI	CTYRAG	1 cut(s)	742
SphI	GCATGC	1 cut(s)	918
Sse9I	AATT	4 cut(s)	239, 447, 662, 726
SseBI	AGGCCT	1 cut(s)	712
StuI	AGGCCT	1 cut(s)	712
StyD4I	CCNGG	1 cut(s)	895
TaaI	ACNGT	6 cut(s)	343, 409, 596, 648, 892, 934
TaiI	ACGT	1 cut(s)	226
TaqI	TCGA	3 cut(s)	62, 614, 887
TasI	AATT	4 cut(s)	239, 447, 662, 726
TfiI	GAWTC	2 cut(s)	968, 1016
Tru1I	TTAA	4 cut(s)	113, 450, 573, 743
Tru9I	TTAA	4 cut(s)	113, 450, 573, 743
TscAI	CASTG	2 cut(s)	233, 412
TseFI	GTSAC	1 cut(s)	234
TseI	GCWGC	9 cut(s)	182, 218, 287, 878, 918, 983, 1001, 1004, 1094
Tsp45I	GTSAC	1 cut(s)	234
TspDTI	ATGAA	3 cut(s)	510, 572, 960
TspRI	CASTG	2 cut(s)	233, 412
Vha464I	CTTAAG	1 cut(s)	742
VpaK11BI	GGWCC	3 cut(s)	472, 902, 954
XapI	RAATTY	1 cut(s)	662
XceI	RCATGY	3 cut(s)	564, 918, 1001
XmiI	GTMKAC	1 cut(s)	994

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.