RchiOBHm_Chr2g0113591

Glutamine amidotransferase domain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
25718998 .. 25720615
1618 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48693

Sequence Viewer

Length: 672 bp
ATGATCATCAGATATGTGGCTGTGTTAAAGAGACTTATGACAGATGTACCATTCGGTGTTCTTTTGTCTGGAGGATTGTACATCATAATTACATACCTTTTGTGTTGGCTTGGAGTTAAGGGAAAGGTTCTAGGTGTTAGGGAGATTTTCAATGTTCAGGGTTCTCCAGATTTGAAAACAGCAAGAGAAGTTGCAGATTTTCTTGGAACTCATCATCACGAGTTTCACTTTACTGTTCAGGAAGGCATAAATGCACTTGAAGAAGTTATCTACCATATTGAGACATATGATATGACCACTGTCGGAGCCAGCACTCCAATGTTTCTTATGTCTCGTAAAAATAAATCTCTGGGAGTGAAAATGGTCCTTTCTGGTGAAGGTTCGGATGAAATCTTTGGTGGCTACATGTATTTCCACAAGGCACCAAACAAGGAGGAGTTTCTCCAAGAAACATGCCAGAAGATTAAAGGTCTTCATCTGTATGACTGTCTGAGGGCCCACAAATCAACATCAGCTTGGGGTGTTGAGGCTCGTGTACCGTTTCTTGACGAAGAATTTATCAAGACTGCTATGGACATTGATCCAGAATGGAAAAATGGTATAGCAATCATTAAACTTTGTTTTTTTCCTCCAATTTTATACACATACAGTTCATGTATTGTAGTGATTTGA

Protein Analysis

223

Amino Acids

25.27

Weight (kDa)

6.24

Isoelectric Point (pI)

42.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asn_synthase PF00733 7 - 145 1.2e-32 Asparagine synthase
Asn_synthase PF00733 143 - 198 2.7e-11 Asparagine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis pycom01g05790
rosa_chinensis RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 421
AclWI GGATC 1 cut(s) 575
AcsI RAATTY 1 cut(s) 554
AfaI GTAC 3 cut(s) 48, 80, 537
AflIII ACRYGT 1 cut(s) 405
AgsI TTSAA 3 cut(s) 151, 175, 260
AluBI AGCT 1 cut(s) 515
AluI AGCT 1 cut(s) 515
Alw26I GTCTC 3 cut(s) 25, 275, 336
AlwI GGATC 1 cut(s) 575
AoxI GGCC 1 cut(s) 495
ApaI GGGCCC 1 cut(s) 499
ApoI RAATTY 1 cut(s) 554
AspS9I GGNCC 3 cut(s) 364, 495, 496
AsuHPI GGTGA 1 cut(s) 386
AvaII GGWCC 1 cut(s) 364
BaeGI GKGCMC 1 cut(s) 499
BaeI ACNNNNGTAYC 2 cut(s) 30, 63
BanI GGYRCC 1 cut(s) 421
BanII GRGCYC 1 cut(s) 499
BauI CACGAG 2 cut(s) 218, 531
BbsI GAAGAC 1 cut(s) 464
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 3 cut(s) 25, 275, 336
BfaI CTAG 1 cut(s) 131
Bme18I GGWCC 1 cut(s) 364
BmgT120I GGNCC 3 cut(s) 364, 495, 496
BmiI GGNNCC 3 cut(s) 307, 423, 497
BoxI GACNNNNGTC 1 cut(s) 299
BpiI GAAGAC 1 cut(s) 464
BpmI CTGGAG 2 cut(s) 90, 150
BseGI GGATG 1 cut(s) 391
BseMII CTCAG 1 cut(s) 482
BseRI GAGGAG 1 cut(s) 449
BseSI GKGCMC 1 cut(s) 499
BshFI GGCC 1 cut(s) 497
BshNI GGYRCC 1 cut(s) 421
BsmAI GTCTC 3 cut(s) 25, 275, 336
BsnI GGCC 1 cut(s) 497
Bsp120I GGGCCC 1 cut(s) 495
Bsp1286I GDGCHC 1 cut(s) 499
Bsp1407I TGTACA 1 cut(s) 78
Bsp143I GATC 2 cut(s) 3, 580
BspANI GGCC 1 cut(s) 497
BspCNI CTCAG 1 cut(s) 483
BspLI GGNNCC 3 cut(s) 307, 423, 497
BspPI GGATC 1 cut(s) 575
BspT107I GGYRCC 1 cut(s) 421
BsrGI TGTACA 1 cut(s) 78
BssMI GATC 2 cut(s) 3, 580
BssSI CACGAG 2 cut(s) 218, 531
Bst2BI CACGAG 2 cut(s) 218, 531
Bst4CI ACNGT 5 cut(s) 235, 301, 488, 540, 650
BstAUI TGTACA 1 cut(s) 78
BstC8I GCNNGC 1 cut(s) 310
BstDEI CTNAG 1 cut(s) 491
BstF5I GGATG 1 cut(s) 391
BstKTI GATC 2 cut(s) 6, 583
BstMAI GTCTC 3 cut(s) 25, 275, 336
BstMBI GATC 2 cut(s) 3, 580
BstNSI RCATGY 2 cut(s) 409, 456
BstPAI GACNNNNGTC 1 cut(s) 299
BstSLI GKGCMC 1 cut(s) 499
BstV2I GAAGAC 1 cut(s) 464
BsuRI GGCC 1 cut(s) 497
BtsCI GGATG 1 cut(s) 391
BtsIMutI CAGTG 1 cut(s) 297
Cac8I GCNNGC 1 cut(s) 310
Cfr13I GGNCC 3 cut(s) 364, 495, 496
Csp6I GTAC 3 cut(s) 47, 79, 536
CviAII CATG 3 cut(s) 406, 453, 654
CviJI RGCY 7 cut(s) 20, 109, 308, 402, 497, 515, 530
CviKI_1 RGCY 7 cut(s) 20, 109, 308, 402, 497, 515, 530
CviQI GTAC 3 cut(s) 47, 79, 536
DdeI CTNAG 1 cut(s) 491
DpnI GATC 2 cut(s) 5, 582
DpnII GATC 2 cut(s) 3, 580
Eco24I GRGCYC 1 cut(s) 499
Eco47I GGWCC 1 cut(s) 364
EcoO109I RGGNCCY 1 cut(s) 495
EcoT38I GRGCYC 1 cut(s) 499
FaeI CATG 3 cut(s) 409, 456, 657
FatI CATG 3 cut(s) 405, 452, 653
FauNDI CATATG 1 cut(s) 286
FbaI TGATCA 1 cut(s) 3
FokI GGATG 1 cut(s) 398
FriOI GRGCYC 1 cut(s) 499
FspBI CTAG 1 cut(s) 131
GsuI CTGGAG 2 cut(s) 90, 150
HaeIII GGCC 1 cut(s) 497
Hin1II CATG 3 cut(s) 409, 456, 657
HphI GGTGA 1 cut(s) 386
Hpy166II GTNNAC 1 cut(s) 536
Hpy188I TCNGA 4 cut(s) 11, 305, 385, 492
Hpy188III TCNNGA 7 cut(s) 69, 167, 218, 239, 545, 562, 584
Hpy8I GTNNAC 1 cut(s) 536
HpyAV CCTTC 2 cut(s) 236, 371
HpyCH4III ACNGT 5 cut(s) 235, 301, 488, 540, 650
HpyCH4V TGCA 2 cut(s) 194, 254
HpyF3I CTNAG 1 cut(s) 491
Hsp92II CATG 3 cut(s) 409, 456, 657
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 2 cut(s) 3, 580
LmnI GCTCC 1 cut(s) 305
LpnPI CCDG 9 cut(s) 54, 143, 180, 224, 322, 335, 357, 470, 597
MaeI CTAG 1 cut(s) 131
MalI GATC 2 cut(s) 5, 582
MboI GATC 2 cut(s) 3, 580
MboII GAAGA 4 cut(s) 272, 464, 472, 563
MhlI GDGCHC 1 cut(s) 499
MluCI AATT 3 cut(s) 87, 554, 633
MmeI TCCRAC 1 cut(s) 283
MnlI CCTC 5 cut(s) 65, 427, 486, 520, 639
MseI TTAA 4 cut(s) 26, 117, 465, 612
MslI CAYNNNNRTG 2 cut(s) 317, 480
NdeI CATATG 1 cut(s) 286
NdeII GATC 2 cut(s) 3, 580
NlaIII CATG 3 cut(s) 409, 456, 657
NlaIV GGNNCC 3 cut(s) 307, 423, 497
NspI RCATGY 2 cut(s) 409, 456
PciI ACATGT 1 cut(s) 405
PscI ACATGT 1 cut(s) 405
PshAI GACNNNNGTC 1 cut(s) 299
PspN4I GGNNCC 3 cut(s) 307, 423, 497
PspOMI GGGCCC 1 cut(s) 495
PspPI GGNCC 3 cut(s) 364, 495, 496
RsaI GTAC 3 cut(s) 48, 80, 537
RsaNI GTAC 3 cut(s) 47, 79, 536
RseI CAYNNNNRTG 2 cut(s) 317, 480
SaqAI TTAA 4 cut(s) 26, 117, 465, 612
Sau3AI GATC 2 cut(s) 3, 580
Sau96I GGNCC 3 cut(s) 364, 495, 496
SduI GDGCHC 1 cut(s) 499
SetI ASST 6 cut(s) 99, 129, 136, 382, 472, 517
SinI GGWCC 1 cut(s) 364
SmiMI CAYNNNNRTG 2 cut(s) 317, 480
Sse9I AATT 3 cut(s) 87, 554, 633
SspMI CTAG 1 cut(s) 131
TaaI ACNGT 5 cut(s) 235, 301, 488, 540, 650
TasI AATT 3 cut(s) 87, 554, 633
TatI WGTACW 1 cut(s) 78
Tru1I TTAA 4 cut(s) 26, 117, 465, 612
Tru9I TTAA 4 cut(s) 26, 117, 465, 612
TscAI CASTG 1 cut(s) 304
TspDTI ATGAA 3 cut(s) 402, 464, 642
TspRI CASTG 1 cut(s) 304
VpaK11BI GGWCC 1 cut(s) 364
XapI RAATTY 1 cut(s) 554
XceI RCATGY 2 cut(s) 409, 456
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.