Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Forward (+)

26262531 .. 26267589

Gene Structure 5059 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48756

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGGGATTGTTACCTTGCTCATCAGCGACTGGCTATTGTGGACCCTGCCAAAGGAGATCAGCCACTCTACAACGAGGACAAGACCGTCATTGTCACGATTCGTATCTTTTCCTCCTGGGCATTTATACTCTAGCAAACAAGGAGGGCTGAGAAGGTGGTACAATCCACAATGGTTTTTGGAGAAGATACCATCTACTCCTTATGATCCCTTTGTTTTACACGAGGCTTTTGAGAAGGCTGTGTTAAAGAGACTTATGACAGATGTACCATTCGGTGTTCTTTTGTCCGGAGCATTGGACTCATCACTTGTTGCTGCTGTGGCTTGTCGCTATTTGGCTAAATCAGAAGCTGCACGTCAGTGGAGGTCGCAATTACATACCTTTTGTGTTGGCTTGGAGGGTTCTCCAGATTTGAAAGCAGCAAGAGAAGTTGCAGATTATCTTGGAACTCATCATCACGAGTTTCACTTTACTGTTCAGATTTTCTTAAATTTAAGACTTCAGGAAGGCATAGATGCACTTGAAGAAGTTATCTACCATGTTGAGACATATGATGTGACCACTGTCAGAGCCAGCACTCCAATGTTTCTTATGTCTCATAAAATTAAATCTCTGGGTGTAAAAATGGTCCTTTCTGGTGAAGGTTCAGATGAAATCTTTGGTGGCTACTTGTATTTCCACAAGGCACCAAACAAGGAGGAGTTTCACCAAGAAACATGCCAGAAGATTAAAGGTCTTCATCTGTATGACTGTCTGAGGGCCAACAAATCAACATCAGCTTGGGGTATTGAGGCTCGTGTACTGTTTCTTGACAAAGAATTCATCAAGACTGCTATGGACATTGATCCAGGATGGAAAATGATCATGCCTGATCTTGGAAGAATTGAGAAGTGGGTCTTACGCAAAGCATTTGATGATGATCAAAAGCCATATTTACCAAAGCACATCTTGTACAGGCAGAAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

322

Amino Acids

37.05

Weight (kDa)

8.22

Isoelectric Point (pI)

47.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asn_synthase	PF00733	73 - 232	2.6e-45	Asparagine synthase
Asn_synthase	PF00733	230 - 322	2.1e-19	Asparagine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	85
AccB1I	GGYRCC	1 cut(s)	685
AccIII	TCCGGA	1 cut(s)	287
AclWI	GGATC	2 cut(s)	200, 839
AcsI	RAATTY	2 cut(s)	490, 818
AcuI	CTGAAG	1 cut(s)	485
AfaI	GTAC	4 cut(s)	161, 267, 801, 953
AfiI	CCNNNNNNNGG	2 cut(s)	52, 875
AgsI	TTSAA	2 cut(s)	415, 524
AjiI	CACGTC	1 cut(s)	356
AjnI	CCWGG	2 cut(s)	115, 847
AleI	CACNNNNGTG	1 cut(s)	358
AluBI	AGCT	2 cut(s)	350, 779
AluI	AGCT	2 cut(s)	350, 779
Alw26I	GTCTC	3 cut(s)	244, 539, 600
AlwI	GGATC	2 cut(s)	200, 839
AlwNI	CAGNNNCTG	2 cut(s)	30, 350
Aor13HI	TCCGGA	1 cut(s)	287
AoxI	GGCC	1 cut(s)	759
ApeKI	GCWGC	3 cut(s)	314, 350, 419
ApoI	RAATTY	2 cut(s)	490, 818
AspS9I	GGNCC	3 cut(s)	42, 628, 759
AsuHPI	GGTGA	2 cut(s)	650, 698
AvaII	GGWCC	2 cut(s)	42, 628
BaeI	ACNNNNGTAYC	2 cut(s)	249, 282
BanI	GGYRCC	1 cut(s)	685
BauI	CACGAG	3 cut(s)	221, 458, 795
BbsI	GAAGAC	1 cut(s)	728
BbvI	GCAGC	3 cut(s)	301, 337, 431
BccI	CCATC	2 cut(s)	199, 846
BciT130I	CCWGG	2 cut(s)	117, 849
BclI	TGATCA	2 cut(s)	861, 919
BcoDI	GTCTC	3 cut(s)	244, 539, 600
BfaI	CTAG	1 cut(s)	132
BisI	GCNGC	3 cut(s)	315, 351, 420
BlsI	GCNGC	3 cut(s)	316, 352, 421
Bme1390I	CCNGG	2 cut(s)	117, 849
Bme18I	GGWCC	2 cut(s)	42, 628
BmgBI	CACGTC	1 cut(s)	356
BmgT120I	GGNCC	3 cut(s)	42, 628, 759
BmiI	GGNNCC	2 cut(s)	44, 687
BmrFI	CCNGG	2 cut(s)	117, 849
BmsI	GCATC	1 cut(s)	505
BoxI	GACNNNNGTC	1 cut(s)	563
BpiI	GAAGAC	1 cut(s)	728
BpmI	CTGGAG	1 cut(s)	390
BsaBI	GATNNNNATC	2 cut(s)	103, 918
BsaJI	CCNNGG	1 cut(s)	116
BsaWI	WCCGGW	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 875
Bse1I	ACTGG	1 cut(s)	35
Bse8I	GATNNNNATC	2 cut(s)	103, 918
BseAI	TCCGGA	1 cut(s)	287
BseBI	CCWGG	2 cut(s)	117, 849
BseDI	CCNNGG	1 cut(s)	116
BseGI	GGATG	1 cut(s)	857
BseJI	GATNNNNATC	2 cut(s)	103, 918
BseLI	CCNNNNNNNGG	2 cut(s)	52, 875
BseMII	CTCAG	2 cut(s)	140, 746
BseNI	ACTGG	1 cut(s)	35
BseRI	GAGGAG	1 cut(s)	713
BseXI	GCAGC	3 cut(s)	301, 337, 431
BsgI	GTGCAG	1 cut(s)	336
BshFI	GGCC	1 cut(s)	761
BshNI	GGYRCC	1 cut(s)	685
BsiSI	CCGG	1 cut(s)	288
BslI	CCNNNNNNNGG	2 cut(s)	52, 875
BsmAI	GTCTC	3 cut(s)	244, 539, 600
BsnI	GGCC	1 cut(s)	761
Bsp13I	TCCGGA	1 cut(s)	287
Bsp1407I	TGTACA	1 cut(s)	951
Bsp143I	GATC	6 cut(s)	57, 205, 844, 861, 871, 919
BspANI	GGCC	1 cut(s)	761
BspCNI	CTCAG	2 cut(s)	141, 747
BspEI	TCCGGA	1 cut(s)	287
BspLI	GGNNCC	2 cut(s)	44, 687
BspPI	GGATC	2 cut(s)	200, 839
BspT107I	GGYRCC	1 cut(s)	685
BsrGI	TGTACA	1 cut(s)	951
BsrI	ACTGG	1 cut(s)	35
BssECI	CCNNGG	1 cut(s)	116
BssMI	GATC	6 cut(s)	57, 205, 844, 861, 871, 919
BssSI	CACGAG	3 cut(s)	221, 458, 795
Bst2BI	CACGAG	3 cut(s)	221, 458, 795
Bst2UI	CCWGG	2 cut(s)	117, 849
Bst4CI	ACNGT	5 cut(s)	87, 475, 565, 752, 804
BstAUI	TGTACA	1 cut(s)	951
BstC8I	GCNNGC	1 cut(s)	574
BstDEI	CTNAG	2 cut(s)	149, 755
BstENI	CCTNNNNNAGG	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	857
BstKTI	GATC	6 cut(s)	60, 208, 847, 864, 874, 922
BstMAI	GTCTC	3 cut(s)	244, 539, 600
BstMBI	GATC	6 cut(s)	57, 205, 844, 861, 871, 919
BstMWI	GCNNNNNNNGC	1 cut(s)	320
BstNI	CCWGG	2 cut(s)	117, 849
BstNSI	RCATGY	1 cut(s)	720
BstPAI	GACNNNNGTC	1 cut(s)	563
BstSCI	CCNGG	2 cut(s)	115, 847
BstV1I	GCAGC	3 cut(s)	301, 337, 431
BstV2I	GAAGAC	1 cut(s)	728
BsuRI	GGCC	1 cut(s)	761
BtrI	CACGTC	1 cut(s)	356
BtsCI	GGATG	1 cut(s)	857
BtsIMutI	CAGTG	2 cut(s)	365, 561
Cac8I	GCNNGC	1 cut(s)	574
CaiI	CAGNNNCTG	2 cut(s)	30, 350
Cfr13I	GGNCC	3 cut(s)	42, 628, 759
Csp6I	GTAC	4 cut(s)	160, 266, 800, 952
CviAII	CATG	3 cut(s)	539, 717, 865
CviQI	GTAC	4 cut(s)	160, 266, 800, 952
DdeI	CTNAG	2 cut(s)	149, 755
DpnI	GATC	6 cut(s)	59, 207, 846, 863, 873, 921
DpnII	GATC	6 cut(s)	57, 205, 844, 861, 871, 919
DrdI	GACNNNNNNGTC	1 cut(s)	85
DseDI	GACNNNNNNGTC	1 cut(s)	85
Eco47I	GGWCC	2 cut(s)	42, 628
Eco57I	CTGAAG	1 cut(s)	485
EcoNI	CCTNNNNNAGG	1 cut(s)	50
EcoRI	GAATTC	1 cut(s)	818
EcoRII	CCWGG	2 cut(s)	115, 847
FaeI	CATG	3 cut(s)	542, 720, 868
FalI	AAGNNNNNCTT	4 cut(s)	881, 913, 932, 964
FatI	CATG	3 cut(s)	538, 716, 864
FauNDI	CATATG	1 cut(s)	550
FbaI	TGATCA	2 cut(s)	861, 919
Fnu4HI	GCNGC	3 cut(s)	315, 351, 420
FokI	GGATG	1 cut(s)	864
Fsp4HI	GCNGC	3 cut(s)	315, 351, 420
FspBI	CTAG	1 cut(s)	132
GluI	GCNGC	3 cut(s)	315, 351, 420
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	1 cut(s)	761
HapII	CCGG	1 cut(s)	288
Hin1II	CATG	3 cut(s)	542, 720, 868
HinfI	GANTC	2 cut(s)	99, 299
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	2 cut(s)	650, 698
Hpy166II	GTNNAC	2 cut(s)	42, 800
Hpy188I	TCNGA	5 cut(s)	346, 480, 569, 649, 756
Hpy188III	TCNNGA	7 cut(s)	96, 288, 407, 458, 503, 809, 826
Hpy8I	GTNNAC	2 cut(s)	42, 800
HpyAV	CCTTC	5 cut(s)	147, 229, 500, 635, 955
HpyCH4III	ACNGT	5 cut(s)	87, 475, 565, 752, 804
HpyCH4IV	ACGT	1 cut(s)	355
HpyCH4V	TGCA	3 cut(s)	353, 434, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	320
HpyF3I	CTNAG	2 cut(s)	149, 755
HpySE526I	ACGT	1 cut(s)	355
Hsp92II	CATG	3 cut(s)	542, 720, 868
Kpn2I	TCCGGA	1 cut(s)	287
Ksp22I	TGATCA	2 cut(s)	861, 919
Kzo9I	GATC	6 cut(s)	57, 205, 844, 861, 871, 919
LmnI	GCTCC	1 cut(s)	290
Lsp1109I	GCAGC	3 cut(s)	301, 337, 431
LweI	GCATC	1 cut(s)	505
MaeI	CTAG	1 cut(s)	132
MaeII	ACGT	1 cut(s)	355
MaeIII	GTNAC	3 cut(s)	10, 93, 556
MalI	GATC	6 cut(s)	59, 207, 846, 863, 873, 921
MboI	GATC	6 cut(s)	57, 205, 844, 861, 871, 919
MboII	GAAGA	5 cut(s)	196, 536, 728, 736, 891
MluCI	AATT	5 cut(s)	371, 490, 603, 818, 882
MlyI	GAGTC	1 cut(s)	293
MnlI	CCTC	9 cut(s)	69, 123, 137, 217, 357, 391, 691, 750, 784
MroI	TCCGGA	1 cut(s)	287
MseI	TTAA	5 cut(s)	245, 488, 494, 606, 729
MslI	CAYNNNNRTG	3 cut(s)	358, 581, 744
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	2 cut(s)	117, 849
MvaI	CCWGG	2 cut(s)	117, 849
MwoI	GCNNNNNNNGC	1 cut(s)	320
NdeI	CATATG	1 cut(s)	550
NdeII	GATC	6 cut(s)	57, 205, 844, 861, 871, 919
NlaIII	CATG	3 cut(s)	542, 720, 868
NlaIV	GGNNCC	2 cut(s)	44, 687
NmuCI	GTSAC	2 cut(s)	93, 556
NspI	RCATGY	1 cut(s)	720
OliI	CACNNNNGTG	1 cut(s)	358
PfeI	GAWTC	1 cut(s)	99
PfoI	TCCNGGA	1 cut(s)	847
PkrI	GCNGC	3 cut(s)	316, 352, 421
PleI	GAGTC	1 cut(s)	293
PpsI	GAGTC	1 cut(s)	293
PshAI	GACNNNNGTC	1 cut(s)	563
Psp6I	CCWGG	2 cut(s)	115, 847
PspGI	CCWGG	2 cut(s)	115, 847
PspN4I	GGNNCC	2 cut(s)	44, 687
PspPI	GGNCC	3 cut(s)	42, 628, 759
PstNI	CAGNNNCTG	2 cut(s)	30, 350
RsaI	GTAC	4 cut(s)	161, 267, 801, 953
RsaNI	GTAC	4 cut(s)	160, 266, 800, 952
RseI	CAYNNNNRTG	3 cut(s)	358, 581, 744
SaqAI	TTAA	5 cut(s)	245, 488, 494, 606, 729
SatI	GCNGC	3 cut(s)	315, 351, 420
Sau3AI	GATC	6 cut(s)	57, 205, 844, 861, 871, 919
Sau96I	GGNCC	3 cut(s)	42, 628, 759
SchI	GAGTC	1 cut(s)	293
ScrFI	CCNGG	2 cut(s)	117, 849
SetI	ASST	9 cut(s)	17, 158, 352, 358, 368, 383, 646, 736, 781
SfaNI	GCATC	1 cut(s)	505
SinI	GGWCC	2 cut(s)	42, 628
SmiMI	CAYNNNNRTG	3 cut(s)	358, 581, 744
Sse9I	AATT	5 cut(s)	371, 490, 603, 818, 882
SspMI	CTAG	1 cut(s)	132
StyD4I	CCNGG	2 cut(s)	115, 847
TaaI	ACNGT	5 cut(s)	87, 475, 565, 752, 804
TaiI	ACGT	1 cut(s)	358
TasI	AATT	5 cut(s)	371, 490, 603, 818, 882
TatI	WGTACW	2 cut(s)	799, 951
TfiI	GAWTC	1 cut(s)	99
Tru1I	TTAA	5 cut(s)	245, 488, 494, 606, 729
Tru9I	TTAA	5 cut(s)	245, 488, 494, 606, 729
TscAI	CASTG	2 cut(s)	365, 568
TseFI	GTSAC	2 cut(s)	93, 556
TseI	GCWGC	3 cut(s)	314, 350, 419
Tsp45I	GTSAC	2 cut(s)	93, 556
TspDTI	ATGAA	3 cut(s)	666, 728, 811
TspRI	CASTG	2 cut(s)	365, 568
VpaK11BI	GGWCC	2 cut(s)	42, 628
XagI	CCTNNNNNAGG	1 cut(s)	50
XapI	RAATTY	2 cut(s)	490, 818
XceI	RCATGY	1 cut(s)	720
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.