Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Forward (+)

25967454 .. 25969761

Gene Structure 2308 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48714

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTGTCGATCGGTTGTTGAGGCTGAGAATGGTGATAGGGAAGTTTCCAATTATCTTGATCTGTTATGTGAGGAATTAAAAGCATCTGTTACCTTACGGCATCGCGGTCCTGATTGGAGCGAGTTGCATTGCCATGGGGATTGTTACCTTGCTCATCAGCGATTGGCTATTGTGGACCCTGCCTCAGGAGATCAGCCGCTCTACAACGAGGACAAGACCGTCATTGTCACGGTTAATGGTGAGATATATAACCACAAGCAGTTGAGAGAAACATTGAAGGGTCATCGATTCCGAACTGGCAGTGACTGTGAAGTGATAGCGCACCTTTACGAGGAACATGGGGAAGAATTTGTTGACATGCTGGACGGGATGTTCTCCTTTGTCCTTCTTGATACAAGAGACGATACTTTCATGGCGGCTCGAGATGCTATTGGCATAACCCCACTGTACATGGGTTGGGGGGTCTTGATGGTAGGATCAATTTGGTTTGCTTCAGAAATGAAAGCTATAAGTGATGATTGTGAAAGATTCATATCTTTTCCTCCTGGGCATTTAGCTCTAGTAACTAATAATGATTTGGTTCATAAACCAACTAACAGCCTTTTAGTCAGCAAAAGTTTTAATATAAATCTTCTAAGATCAGCATACTTCTTATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

219

Amino Acids

24.8

Weight (kDa)

5.03

Isoelectric Point (pI)

24.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase_6	PF13522	37 - 166	1.2e-36	Glutamine amidotransferase domain
GATase_7	PF13537	52 - 171	8.2e-43	Glutamine amidotransferase domain
DUF3700	PF12481	116 - 185	1e-07	Aluminium induced protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	218
AccBSI	CCGCTC	1 cut(s)	199
AccII	CGCG	1 cut(s)	105
AciI	CCGC	3 cut(s)	105, 197, 416
AclWI	GGATC	1 cut(s)	484
AcsI	RAATTY	1 cut(s)	347
AcuI	CTGAAG	1 cut(s)	477
AfaI	GTAC	1 cut(s)	449
AfiI	CCNNNNNNNGG	2 cut(s)	185, 331
AgsI	TTSAA	1 cut(s)	277
AjnI	CCWGG	1 cut(s)	544
AloI	GAACNNNNNNTCC	2 cut(s)	356, 388
AluBI	AGCT	2 cut(s)	506, 557
AluI	AGCT	2 cut(s)	506, 557
Alw26I	GTCTC	1 cut(s)	393
AlwI	GGATC	1 cut(s)	484
AlwNI	CAGNNNCTG	1 cut(s)	306
Ama87I	CYCGRG	1 cut(s)	420
ApoI	RAATTY	1 cut(s)	347
AspLEI	GCGC	1 cut(s)	322
AspS9I	GGNCC	2 cut(s)	107, 175
AsuHPI	GGTGA	2 cut(s)	44, 251
AvaI	CYCGRG	1 cut(s)	420
AvaII	GGWCC	2 cut(s)	107, 175
AxyI	CCTNAGG	1 cut(s)	184
BccI	CCATC	1 cut(s)	463
BceAI	ACGGC	1 cut(s)	113
BciT130I	CCWGG	1 cut(s)	546
BcoDI	GTCTC	1 cut(s)	393
BfaI	CTAG	1 cut(s)	560
BisI	GCNGC	2 cut(s)	197, 417
BlsI	GCNGC	2 cut(s)	198, 418
Bme1390I	CCNGG	1 cut(s)	546
Bme18I	GGWCC	2 cut(s)	107, 175
BmeT110I	CYCGRG	1 cut(s)	420
BmgT120I	GGNCC	2 cut(s)	107, 175
BmiI	GGNNCC	1 cut(s)	177
BmrFI	CCNGG	1 cut(s)	546
BmsI	GCATC	3 cut(s)	92, 109, 415
Bsa29I	ATCGAT	1 cut(s)	286
BsaBI	GATNNNNATC	1 cut(s)	532
BsaJI	CCNNGG	2 cut(s)	133, 545
Bsc4I	CCNNNNNNNGG	2 cut(s)	185, 331
Bse1I	ACTGG	1 cut(s)	301
Bse21I	CCTNAGG	1 cut(s)	184
Bse3DI	GCAATG	1 cut(s)	127
Bse8I	GATNNNNATC	1 cut(s)	532
BseBI	CCWGG	1 cut(s)	546
BseCI	ATCGAT	1 cut(s)	286
BseDI	CCNNGG	2 cut(s)	133, 545
BseGI	GGATG	1 cut(s)	375
BseJI	GATNNNNATC	1 cut(s)	532
BseLI	CCNNNNNNNGG	2 cut(s)	185, 331
BseMI	GCAATG	1 cut(s)	127
BseMII	CTCAG	2 cut(s)	15, 198
BseNI	ACTGG	1 cut(s)	301
Bsh1236I	CGCG	1 cut(s)	105
Bsh1285I	CGRYCG	1 cut(s)	11
BshVI	ATCGAT	1 cut(s)	286
BsiEI	CGRYCG	1 cut(s)	11
BsiHKCI	CYCGRG	1 cut(s)	420
BslI	CCNNNNNNNGG	2 cut(s)	185, 331
BsmAI	GTCTC	1 cut(s)	393
BsmBI	CGTCTC	1 cut(s)	393
BsoBI	CYCGRG	1 cut(s)	420
Bsp1407I	TGTACA	1 cut(s)	447
Bsp143I	GATC	5 cut(s)	8, 58, 190, 476, 638
Bsp19I	CCATGG	1 cut(s)	133
BspACI	CCGC	3 cut(s)	105, 197, 416
BspCNI	CTCAG	2 cut(s)	16, 197
BspDI	ATCGAT	1 cut(s)	286
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	177
BspPI	GGATC	1 cut(s)	484
BsrBI	CCGCTC	1 cut(s)	199
BsrDI	GCAATG	1 cut(s)	127
BsrGI	TGTACA	1 cut(s)	447
BsrI	ACTGG	1 cut(s)	301
BssECI	CCNNGG	2 cut(s)	133, 545
BssMI	GATC	5 cut(s)	8, 58, 190, 476, 638
BssT1I	CCWWGG	1 cut(s)	133
Bst2UI	CCWGG	1 cut(s)	546
Bst4CI	ACNGT	4 cut(s)	220, 232, 308, 447
BstAUI	TGTACA	1 cut(s)	447
BstDEI	CTNAG	3 cut(s)	24, 184, 635
BstDSI	CCRYGG	1 cut(s)	133
BstENI	CCTNNNNNAGG	2 cut(s)	183, 329
BstF5I	GGATG	1 cut(s)	375
BstFNI	CGCG	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	322
BstKTI	GATC	5 cut(s)	11, 61, 193, 479, 641
BstMAI	GTCTC	1 cut(s)	393
BstMBI	GATC	5 cut(s)	8, 58, 190, 476, 638
BstMCI	CGRYCG	1 cut(s)	11
BstMWI	GCNNNNNNNGC	1 cut(s)	425
BstNI	CCWGG	1 cut(s)	546
BstNSI	RCATGY	1 cut(s)	361
BstSCI	CCNGG	1 cut(s)	544
BstUI	CGCG	1 cut(s)	105
Bsu15I	ATCGAT	1 cut(s)	286
Bsu36I	CCTNAGG	1 cut(s)	184
BsuTUI	ATCGAT	1 cut(s)	286
BtgI	CCRYGG	1 cut(s)	133
BtgZI	GCGATG	1 cut(s)	86
BtsCI	GGATG	1 cut(s)	375
BtsI	GCAGTG	1 cut(s)	307
BtsIMutI	CAGTG	2 cut(s)	307, 443
CaiI	CAGNNNCTG	1 cut(s)	306
CfoI	GCGC	1 cut(s)	322
Cfr13I	GGNCC	2 cut(s)	107, 175
ClaI	ATCGAT	1 cut(s)	286
Csp6I	GTAC	1 cut(s)	448
CviAII	CATG	5 cut(s)	134, 338, 358, 412, 451
CviJI	RGCY	7 cut(s)	23, 167, 196, 419, 506, 557, 600
CviKI_1	RGCY	7 cut(s)	23, 167, 196, 419, 506, 557, 600
CviQI	GTAC	1 cut(s)	448
DdeI	CTNAG	3 cut(s)	24, 184, 635
DpnI	GATC	5 cut(s)	10, 60, 192, 478, 640
DpnII	GATC	5 cut(s)	8, 58, 190, 476, 638
DrdI	GACNNNNNNGTC	1 cut(s)	218
DseDI	GACNNNNNNGTC	1 cut(s)	218
Eco130I	CCWWGG	1 cut(s)	133
Eco47I	GGWCC	2 cut(s)	107, 175
Eco57I	CTGAAG	1 cut(s)	477
Eco81I	CCTNAGG	1 cut(s)	184
Eco88I	CYCGRG	1 cut(s)	420
EcoNI	CCTNNNNNAGG	2 cut(s)	183, 329
EcoRII	CCWGG	1 cut(s)	544
EcoT14I	CCWWGG	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	133
Esp3I	CGTCTC	1 cut(s)	393
FaeI	CATG	5 cut(s)	137, 341, 361, 415, 454
FatI	CATG	5 cut(s)	133, 337, 357, 411, 450
Fnu4HI	GCNGC	2 cut(s)	197, 417
FokI	GGATG	1 cut(s)	382
Fsp4HI	GCNGC	2 cut(s)	197, 417
FspBI	CTAG	1 cut(s)	560
GlaI	GCGC	1 cut(s)	321
GluI	GCNGC	2 cut(s)	197, 417
HhaI	GCGC	1 cut(s)	322
Hin1II	CATG	5 cut(s)	137, 341, 361, 415, 454
Hin6I	GCGC	1 cut(s)	320
HinP1I	GCGC	1 cut(s)	320
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HinfI	GANTC	2 cut(s)	288, 528
HphI	GGTGA	2 cut(s)	44, 251
Hpy166II	GTNNAC	2 cut(s)	175, 355
Hpy188I	TCNGA	2 cut(s)	293, 496
Hpy188III	TCNNGA	6 cut(s)	56, 110, 186, 389, 422, 466
Hpy8I	GTNNAC	2 cut(s)	175, 355
HpyAV	CCTTC	2 cut(s)	271, 395
HpyCH4III	ACNGT	4 cut(s)	220, 232, 308, 447
HpyCH4V	TGCA	1 cut(s)	127
HpyF10VI	GCNNNNNNNGC	1 cut(s)	425
HpyF3I	CTNAG	3 cut(s)	24, 184, 635
Hsp92II	CATG	5 cut(s)	137, 341, 361, 415, 454
HspAI	GCGC	1 cut(s)	320
Kzo9I	GATC	5 cut(s)	8, 58, 190, 476, 638
LmnI	GCTCC	1 cut(s)	117
LpnPI	CCDG	7 cut(s)	123, 171, 192, 282, 347, 531, 558
LweI	GCATC	3 cut(s)	92, 109, 415
MaeI	CTAG	1 cut(s)	560
MaeIII	GTNAC	5 cut(s)	88, 143, 226, 302, 562
MalI	GATC	5 cut(s)	10, 60, 192, 478, 640
MbiI	CCGCTC	1 cut(s)	199
MboI	GATC	5 cut(s)	8, 58, 190, 476, 638
MboII	GAAGA	2 cut(s)	356, 623
MluCI	AATT	4 cut(s)	49, 74, 347, 480
MnlI	CCTC	6 cut(s)	13, 64, 193, 202, 325, 552
MseI	TTAA	3 cut(s)	77, 234, 621
MslI	CAYNNNNRTG	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	546
MvaI	CCWGG	1 cut(s)	546
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	425
NcoI	CCATGG	1 cut(s)	133
NdeII	GATC	5 cut(s)	8, 58, 190, 476, 638
NlaIII	CATG	5 cut(s)	137, 341, 361, 415, 454
NlaIV	GGNNCC	1 cut(s)	177
NmuCI	GTSAC	2 cut(s)	226, 302
NspI	RCATGY	1 cut(s)	361
PaeR7I	CTCGAG	1 cut(s)	420
PfeI	GAWTC	2 cut(s)	288, 528
PkrI	GCNGC	2 cut(s)	198, 418
Ple19I	CGATCG	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	544
PspGI	CCWGG	1 cut(s)	544
PspN4I	GGNNCC	1 cut(s)	177
PspPI	GGNCC	2 cut(s)	107, 175
PstNI	CAGNNNCTG	1 cut(s)	306
PvuI	CGATCG	1 cut(s)	11
RsaI	GTAC	1 cut(s)	449
RsaNI	GTAC	1 cut(s)	448
RseI	CAYNNNNRTG	1 cut(s)	132
SaqAI	TTAA	3 cut(s)	77, 234, 621
SatI	GCNGC	2 cut(s)	197, 417
Sau3AI	GATC	5 cut(s)	8, 58, 190, 476, 638
Sau96I	GGNCC	2 cut(s)	107, 175
ScrFI	CCNGG	1 cut(s)	546
SetI	ASST	5 cut(s)	95, 150, 327, 508, 559
SfaNI	GCATC	3 cut(s)	92, 109, 415
Sfr274I	CTCGAG	1 cut(s)	420
SinI	GGWCC	2 cut(s)	107, 175
SlaI	CTCGAG	1 cut(s)	420
SmiMI	CAYNNNNRTG	1 cut(s)	132
SmlI	CTYRAG	1 cut(s)	420
SmoI	CTYRAG	1 cut(s)	420
Sse9I	AATT	4 cut(s)	49, 74, 347, 480
SsiI	CCGC	3 cut(s)	105, 197, 416
SspMI	CTAG	1 cut(s)	560
StyD4I	CCNGG	1 cut(s)	544
StyI	CCWWGG	1 cut(s)	133
TaaI	ACNGT	4 cut(s)	220, 232, 308, 447
TaqI	TCGA	3 cut(s)	7, 286, 421
TasI	AATT	4 cut(s)	49, 74, 347, 480
TatI	WGTACW	1 cut(s)	447
TauI	GCSGC	2 cut(s)	199, 419
TfiI	GAWTC	2 cut(s)	288, 528
Tru1I	TTAA	3 cut(s)	77, 234, 621
Tru9I	TTAA	3 cut(s)	77, 234, 621
TscAI	CASTG	2 cut(s)	307, 450
TseFI	GTSAC	2 cut(s)	226, 302
Tsp45I	GTSAC	2 cut(s)	226, 302
TspDTI	ATGAA	4 cut(s)	400, 515, 520, 572
TspRI	CASTG	2 cut(s)	307, 450
VpaK11BI	GGWCC	2 cut(s)	107, 175
XagI	CCTNNNNNAGG	2 cut(s)	183, 329
XapI	RAATTY	1 cut(s)	347
XceI	RCATGY	1 cut(s)	361
XhoI	CTCGAG	1 cut(s)	420
XspI	CTAG	1 cut(s)	560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.