Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007010.1

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2846

Gene Structure 2846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007010.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ggttctccagatttaaaagcagcaagagaagttgctgattatcttggaactcatcatcacgagtttcactttactgttcagattaaagctcttcatctgtacgactgtccgagggccaataaatcgactttagcttggggtgttgaggctcgagtaccgtttcttgacaaagaattcatcaagaatgctatggacattgatccagaatggaaaatgatcaggcctgatcgtgggagaattgagaagtgggtcttgcgcaaagcatttgatgatgatcagaagccatatttaccaaagcacatcttgtacaggcagaaggagcagtttagtgatggtatcggttacagctggattgatggcttgaaagatcatgccaacaaacaagtatgccgcatttttttacatgcatttacattttggacagaaatcacagcaaaagctgtggagtgggatgccgaatggtccaagaaccctaatccatctggtcgtgatgcacttggtatacatgcagctgcgtacgaggaatccatagatgtgaagactggaagtcttgtgagtgactctccacagaaacttataaaaggggttgcagagcaagtggctgcagttgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

204

Amino Acids

23.31

Weight (kDa)

6.54

Isoelectric Point (pI)

28.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	578
Acc16I	TGCGCA	1 cut(s)	257
AccI	GTMKAC	1 cut(s)	502
AciI	CCGC	1 cut(s)	391
AclWI	GGATC	1 cut(s)	194
AcsI	RAATTY	1 cut(s)	173
AfaI	GTAC	4 cut(s)	101, 156, 308, 518
AfiI	CCNNNNNNNGG	1 cut(s)	230
AgsI	TTSAA	1 cut(s)	364
AhdI	GACNNNNNGTC	1 cut(s)	546
AluBI	AGCT	5 cut(s)	89, 134, 348, 440, 512
AluI	AGCT	5 cut(s)	89, 134, 348, 440, 512
AlwI	GGATC	1 cut(s)	194
Ama87I	CYCGRG	1 cut(s)	150
AoxI	GGCC	2 cut(s)	114, 221
ApeKI	GCWGC	4 cut(s)	20, 509, 512, 602
ApoI	RAATTY	1 cut(s)	173
AspLEI	GCGC	1 cut(s)	258
AspS9I	GGNCC	2 cut(s)	114, 462
AvaI	CYCGRG	1 cut(s)	150
AvaII	GGWCC	1 cut(s)	462
BauI	CACGAG	1 cut(s)	59
BbsI	GAAGAC	1 cut(s)	545
BbvI	GCAGC	4 cut(s)	32, 499, 521, 589
BccI	CCATC	3 cut(s)	326, 350, 487
BclI	TGATCA	2 cut(s)	216, 274
BfmI	CTRYAG	1 cut(s)	603
BisI	GCNGC	5 cut(s)	21, 391, 510, 513, 603
BlsI	GCNGC	5 cut(s)	22, 392, 511, 514, 604
Bme18I	GGWCC	1 cut(s)	462
BmeRI	GACNNNNNGTC	1 cut(s)	546
BmeT110I	CYCGRG	1 cut(s)	150
BmgT120I	GGNCC	2 cut(s)	114, 462
BmsI	GCATC	2 cut(s)	442, 481
BpiI	GAAGAC	1 cut(s)	545
BplI	GAGNNNNNCTC	2 cut(s)	547, 579
BsaBI	GATNNNNATC	1 cut(s)	273
BsaJI	CCNNGG	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse1I	ACTGG	1 cut(s)	547
Bse8I	GATNNNNATC	1 cut(s)	273
BseDI	CCNNGG	1 cut(s)	110
BseGI	GGATG	1 cut(s)	457
BseJI	GATNNNNATC	1 cut(s)	273
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseNI	ACTGG	1 cut(s)	547
BseXI	GCAGC	4 cut(s)	32, 499, 521, 589
BshFI	GGCC	2 cut(s)	116, 223
BsiHKCI	CYCGRG	1 cut(s)	150
BsiWI	CGTACG	1 cut(s)	516
BslI	CCNNNNNNNGG	1 cut(s)	230
BsmI	GAATGC	1 cut(s)	190
BsnI	GGCC	2 cut(s)	116, 223
BsoBI	CYCGRG	1 cut(s)	150
Bsp1407I	TGTACA	1 cut(s)	306
Bsp143I	GATC	5 cut(s)	199, 216, 226, 274, 367
BspACI	CCGC	1 cut(s)	391
BspANI	GGCC	2 cut(s)	116, 223
BspMAI	CTGCAG	1 cut(s)	607
BspPI	GGATC	1 cut(s)	194
BspQI	GCTCTTC	1 cut(s)	96
BsrGI	TGTACA	1 cut(s)	306
BsrI	ACTGG	1 cut(s)	547
BssECI	CCNNGG	1 cut(s)	110
BssMI	GATC	5 cut(s)	199, 216, 226, 274, 367
BssNAI	GTATAC	1 cut(s)	503
BssSI	CACGAG	1 cut(s)	59
Bst1107I	GTATAC	1 cut(s)	503
Bst2BI	CACGAG	1 cut(s)	59
Bst4CI	ACNGT	3 cut(s)	76, 107, 159
Bst6I	CTCTTC	1 cut(s)	96
BstAUI	TGTACA	1 cut(s)	306
BstF5I	GGATG	1 cut(s)	457
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	5 cut(s)	202, 219, 229, 277, 370
BstMBI	GATC	5 cut(s)	199, 216, 226, 274, 367
BstMWI	GCNNNNNNNGC	1 cut(s)	319
BstNSI	RCATGY	2 cut(s)	407, 509
BstSFI	CTRYAG	1 cut(s)	603
BstV1I	GCAGC	4 cut(s)	32, 499, 521, 589
BstV2I	GAAGAC	1 cut(s)	545
BstZ17I	GTATAC	1 cut(s)	503
BsuRI	GGCC	2 cut(s)	116, 223
BtsCI	GGATG	1 cut(s)	457
CfoI	GCGC	1 cut(s)	258
Cfr13I	GGNCC	2 cut(s)	114, 462
Csp6I	GTAC	4 cut(s)	100, 155, 307, 517
CspCI	CAANNNNNGTGG	2 cut(s)	423, 458
CviAII	CATG	3 cut(s)	371, 404, 506
CviQI	GTAC	4 cut(s)	100, 155, 307, 517
DpnI	GATC	5 cut(s)	201, 218, 228, 276, 369
DpnII	GATC	5 cut(s)	199, 216, 226, 274, 367
DraI	TTTAAA	1 cut(s)	15
DriI	GACNNNNNGTC	1 cut(s)	546
Eam1104I	CTCTTC	1 cut(s)	96
Eam1105I	GACNNNNNGTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	96
Eco147I	AGGCCT	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	462
Eco88I	CYCGRG	1 cut(s)	150
EcoRI	GAATTC	1 cut(s)	173
EcoT22I	ATGCAT	1 cut(s)	409
FaeI	CATG	3 cut(s)	374, 407, 509
FaiI	YATR	9 cut(s)	191, 286, 372, 388, 405, 503, 507, 530, 578
FalI	AAGNNNNNCTT	4 cut(s)	236, 268, 287, 319
FatI	CATG	3 cut(s)	370, 403, 505
FbaI	TGATCA	2 cut(s)	216, 274
FblI	GTMKAC	1 cut(s)	502
Fnu4HI	GCNGC	5 cut(s)	21, 391, 510, 513, 603
FokI	GGATG	1 cut(s)	464
Fsp4HI	GCNGC	5 cut(s)	21, 391, 510, 513, 603
FspI	TGCGCA	1 cut(s)	257
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	5 cut(s)	21, 391, 510, 513, 603
HaeIII	GGCC	2 cut(s)	116, 223
HhaI	GCGC	1 cut(s)	258
Hin1II	CATG	3 cut(s)	374, 407, 509
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HinfI	GANTC	2 cut(s)	524, 560
Hpy166II	GTNNAC	1 cut(s)	503
Hpy188I	TCNGA	3 cut(s)	81, 111, 279
Hpy188III	TCNNGA	6 cut(s)	8, 59, 164, 181, 203, 488
Hpy8I	GTNNAC	1 cut(s)	503
HpyAV	CCTTC	1 cut(s)	310
HpyCH4III	ACNGT	3 cut(s)	76, 107, 159
HpyCH4V	TGCA	5 cut(s)	407, 494, 509, 590, 605
HpyF10VI	GCNNNNNNNGC	1 cut(s)	319
Hsp92II	CATG	3 cut(s)	374, 407, 509
HspAI	GCGC	1 cut(s)	256
Ksp22I	TGATCA	2 cut(s)	216, 274
Kzo9I	GATC	5 cut(s)	199, 216, 226, 274, 367
LguI	GCTCTTC	1 cut(s)	96
LmnI	GCTCC	1 cut(s)	319
LpnPI	CCDG	8 cut(s)	21, 205, 216, 237, 295, 334, 468, 528
Lsp1109I	GCAGC	4 cut(s)	32, 499, 521, 589
LweI	GCATC	2 cut(s)	442, 481
MaeIII	GTNAC	2 cut(s)	341, 557
MalI	GATC	5 cut(s)	201, 218, 228, 276, 369
MboI	GATC	5 cut(s)	199, 216, 226, 274, 367
MboII	GAAGA	2 cut(s)	83, 550
MluCI	AATT	2 cut(s)	173, 237
MlyI	GAGTC	1 cut(s)	554
MnlI	CCTC	3 cut(s)	105, 139, 514
Mph1103I	ATGCAT	1 cut(s)	409
MseI	TTAA	2 cut(s)	14, 84
MslI	CAYNNNNRTG	1 cut(s)	533
MspA1I	CMGCKG	2 cut(s)	348, 512
Mva1269I	GAATGC	1 cut(s)	190
MwoI	GCNNNNNNNGC	1 cut(s)	319
NdeII	GATC	5 cut(s)	199, 216, 226, 274, 367
NlaIII	CATG	3 cut(s)	374, 407, 509
NmuCI	GTSAC	1 cut(s)	557
NsbI	TGCGCA	1 cut(s)	257
NsiI	ATGCAT	1 cut(s)	409
NspI	RCATGY	2 cut(s)	407, 509
PaeR7I	CTCGAG	1 cut(s)	150
PceI	AGGCCT	1 cut(s)	223
PciSI	GCTCTTC	1 cut(s)	96
PctI	GAATGC	1 cut(s)	190
PfeI	GAWTC	1 cut(s)	524
Pfl23II	CGTACG	1 cut(s)	516
PkrI	GCNGC	5 cut(s)	22, 392, 511, 514, 604
PleI	GAGTC	1 cut(s)	554
PpsI	GAGTC	1 cut(s)	554
PsiI	TTATAA	1 cut(s)	578
PspLI	CGTACG	1 cut(s)	516
PspPI	GGNCC	2 cut(s)	114, 462
PspXI	VCTCGAGB	1 cut(s)	150
PstI	CTGCAG	1 cut(s)	607
PvuII	CAGCTG	2 cut(s)	348, 512
RsaI	GTAC	4 cut(s)	101, 156, 308, 518
RsaNI	GTAC	4 cut(s)	100, 155, 307, 517
RseI	CAYNNNNRTG	1 cut(s)	533
SapI	GCTCTTC	1 cut(s)	96
SaqAI	TTAA	2 cut(s)	14, 84
SatI	GCNGC	5 cut(s)	21, 391, 510, 513, 603
Sau3AI	GATC	5 cut(s)	199, 216, 226, 274, 367
Sau96I	GGNCC	2 cut(s)	114, 462
SchI	GAGTC	1 cut(s)	554
SetI	ASST	5 cut(s)	91, 136, 350, 442, 514
SfaNI	GCATC	2 cut(s)	442, 481
SfcI	CTRYAG	1 cut(s)	603
Sfr274I	CTCGAG	1 cut(s)	150
SinI	GGWCC	1 cut(s)	462
SlaI	CTCGAG	1 cut(s)	150
SmiMI	CAYNNNNRTG	1 cut(s)	533
SmlI	CTYRAG	1 cut(s)	150
SmoI	CTYRAG	1 cut(s)	150
Sse9I	AATT	2 cut(s)	173, 237
SseBI	AGGCCT	1 cut(s)	223
SsiI	CCGC	1 cut(s)	391
StuI	AGGCCT	1 cut(s)	223
TaaI	ACNGT	3 cut(s)	76, 107, 159
TaqI	TCGA	2 cut(s)	125, 151
TasI	AATT	2 cut(s)	173, 237
TatI	WGTACW	1 cut(s)	306
TauI	GCSGC	1 cut(s)	393
TfiI	GAWTC	1 cut(s)	524
Tru1I	TTAA	2 cut(s)	14, 84
Tru9I	TTAA	2 cut(s)	14, 84
TseFI	GTSAC	1 cut(s)	557
TseI	GCWGC	4 cut(s)	20, 509, 512, 602
Tsp45I	GTSAC	1 cut(s)	557
TspDTI	ATGAA	2 cut(s)	83, 166
VpaK11BI	GGWCC	1 cut(s)	462
XapI	RAATTY	1 cut(s)	173
XceI	RCATGY	2 cut(s)	407, 509
XhoI	CTCGAG	1 cut(s)	150
XmiI	GTMKAC	1 cut(s)	502
Zsp2I	ATGCAT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.