Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000929.1

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Reverse (-)

25306 .. 31007

Gene Structure 5702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000929.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

atgacagatgtaccattcggtgttcttttgttcggaggattggactcgtcactcgttgctgctgtggcttgtcgctatttggctaaatcagaagctgcacgtcagtgggggtcacaattacataccttttgcgttggcttagagggttctccagatttaaaagcagcaagagaagttgctgattatcttggaactcatcatcacgagtttcactttactgttcaggaaggcatagatgcacttgaagaagttatctaccatattgagacatatgatgtgaccactgtcagagccagcactcctatgtttcttatgtcttgtaagattaaatctctgggagtaaaaatggtcctttctggtgaaggttcagatgaaatctttggtggctacttgtatttctacaaggcaccaaacaaggaggagtttcaccaagaaacctgccagaagcttggggtgttgaggctcgagtaccgtttggtgacaaagaattcatcaagactgctatggacattgatccagagtggaaaatggagggctgagaagatgctacaatccacaatgattttggagaagataccatcgattccttgtgatcccattgttttacgcgaggcttttgagaaggctgtgttaaagagacttatgacagaggtaccattcggtgttcttttgtccggagggttggactcagcacttgttgctgctgtggcttgtcgctatttggctaaatcagaatctgcaactcttcatctgtacgactgtatgagggccaccaaattgacttcagcttggggtgttgaggctcgtgtaccatttctcgacaaagaattcatcaagctatggacattgatccagaatggaaaatggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

289

Amino Acids

32.4

Weight (kDa)

6.71

Isoelectric Point (pI)

43.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	446
Acc65I	GGTACC	1 cut(s)	652
AccB1I	GGYRCC	2 cut(s)	406, 652
AccII	CGCG	1 cut(s)	609
AccIII	TCCGGA	1 cut(s)	674
AclWI	GGATC	3 cut(s)	508, 587, 844
AcsI	RAATTY	2 cut(s)	487, 827
AcuI	CTGAAG	1 cut(s)	768
AfaI	GTAC	5 cut(s)	12, 470, 654, 755, 810
AgsI	TTSAA	1 cut(s)	245
AjiI	CACGTC	1 cut(s)	101
AleI	CACNNNNGTG	1 cut(s)	103
AluBI	AGCT	4 cut(s)	95, 448, 788, 838
AluI	AGCT	4 cut(s)	95, 448, 788, 838
Alw26I	GTCTC	2 cut(s)	260, 631
AlwI	GGATC	3 cut(s)	508, 587, 844
AlwNI	CAGNNNCTG	2 cut(s)	95, 737
Ama87I	CYCGRG	1 cut(s)	464
Aor13HI	TCCGGA	1 cut(s)	674
AoxI	GGCC	1 cut(s)	768
ApeKI	GCWGC	4 cut(s)	59, 95, 164, 701
ApoI	RAATTY	2 cut(s)	487, 827
Asp718I	GGTACC	1 cut(s)	652
AspS9I	GGNCC	2 cut(s)	349, 768
AsuHPI	GGTGA	3 cut(s)	371, 419, 490
AvaI	CYCGRG	1 cut(s)	464
AvaII	GGWCC	1 cut(s)	349
BaeI	ACNNNNGTAYC	3 cut(s)	27, 636, 669
BanI	GGYRCC	2 cut(s)	406, 652
BauI	CACGAG	2 cut(s)	203, 804
BbvI	GCAGC	4 cut(s)	46, 82, 176, 688
BccI	CCATC	1 cut(s)	586
BcoDI	GTCTC	2 cut(s)	260, 631
BfuAI	ACCTGC	1 cut(s)	446
BisI	GCNGC	4 cut(s)	60, 96, 165, 702
BlsI	GCNGC	4 cut(s)	61, 97, 166, 703
Bme18I	GGWCC	1 cut(s)	349
BmeT110I	CYCGRG	1 cut(s)	464
BmgBI	CACGTC	1 cut(s)	101
BmgT120I	GGNCC	2 cut(s)	349, 768
BmiI	GGNNCC	2 cut(s)	408, 654
BmsI	GCATC	2 cut(s)	226, 534
BoxI	GACNNNNGTC	1 cut(s)	284
BpmI	CTGGAG	1 cut(s)	135
Bsa29I	ATCGAT	1 cut(s)	581
BsaWI	WCCGGW	1 cut(s)	674
BseAI	TCCGGA	1 cut(s)	674
BseCI	ATCGAT	1 cut(s)	581
BseMII	CTCAG	2 cut(s)	528, 702
BseRI	GAGGAG	1 cut(s)	434
BseXI	GCAGC	4 cut(s)	46, 82, 176, 688
BsgI	GTGCAG	1 cut(s)	81
Bsh1236I	CGCG	1 cut(s)	609
BshFI	GGCC	1 cut(s)	770
BshNI	GGYRCC	2 cut(s)	406, 652
BshVI	ATCGAT	1 cut(s)	581
BsiHKCI	CYCGRG	1 cut(s)	464
BsiSI	CCGG	1 cut(s)	675
BsmAI	GTCTC	2 cut(s)	260, 631
BsnI	GGCC	1 cut(s)	770
BsoBI	CYCGRG	1 cut(s)	464
Bsp13I	TCCGGA	1 cut(s)	674
Bsp143I	GATC	3 cut(s)	513, 592, 849
BspANI	GGCC	1 cut(s)	770
BspCNI	CTCAG	2 cut(s)	529, 701
BspDI	ATCGAT	1 cut(s)	581
BspEI	TCCGGA	1 cut(s)	674
BspFNI	CGCG	1 cut(s)	609
BspLI	GGNNCC	2 cut(s)	408, 654
BspMI	ACCTGC	1 cut(s)	446
BspPI	GGATC	3 cut(s)	508, 587, 844
BspT107I	GGYRCC	2 cut(s)	406, 652
BssMI	GATC	3 cut(s)	513, 592, 849
BssSI	CACGAG	2 cut(s)	203, 804
Bst2BI	CACGAG	2 cut(s)	203, 804
Bst4CI	ACNGT	4 cut(s)	220, 286, 473, 761
Bst6I	CTCTTC	1 cut(s)	750
BstAPI	GCANNNNNTGC	1 cut(s)	698
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	3 cut(s)	139, 537, 688
BstFNI	CGCG	1 cut(s)	609
BstKTI	GATC	3 cut(s)	516, 595, 852
BstMAI	GTCTC	2 cut(s)	260, 631
BstMBI	GATC	3 cut(s)	513, 592, 849
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 698, 707
BstPAI	GACNNNNGTC	1 cut(s)	284
BstUI	CGCG	1 cut(s)	609
BstV1I	GCAGC	4 cut(s)	46, 82, 176, 688
BstXI	CCANNNNNNTGG	1 cut(s)	449
Bsu15I	ATCGAT	1 cut(s)	581
BsuRI	GGCC	1 cut(s)	770
BsuTUI	ATCGAT	1 cut(s)	581
BtrI	CACGTC	1 cut(s)	101
BtsIMutI	CAGTG	2 cut(s)	110, 282
BveI	ACCTGC	1 cut(s)	446
Cac8I	GCNNGC	1 cut(s)	295
CaiI	CAGNNNCTG	2 cut(s)	95, 737
Cfr13I	GGNCC	2 cut(s)	349, 768
ClaI	ATCGAT	1 cut(s)	581
Csp6I	GTAC	5 cut(s)	11, 469, 653, 754, 809
CviQI	GTAC	5 cut(s)	11, 469, 653, 754, 809
DdeI	CTNAG	3 cut(s)	139, 537, 688
DpnI	GATC	3 cut(s)	515, 594, 851
DpnII	GATC	3 cut(s)	513, 592, 849
DraI	TTTAAA	1 cut(s)	159
Eam1104I	CTCTTC	1 cut(s)	750
EarI	CTCTTC	1 cut(s)	750
Eco47I	GGWCC	1 cut(s)	349
Eco57I	CTGAAG	1 cut(s)	768
Eco88I	CYCGRG	1 cut(s)	464
EcoRI	GAATTC	2 cut(s)	487, 827
FauNDI	CATATG	1 cut(s)	271
Fnu4HI	GCNGC	4 cut(s)	60, 96, 165, 702
Fsp4HI	GCNGC	4 cut(s)	60, 96, 165, 702
GluI	GCNGC	4 cut(s)	60, 96, 165, 702
GsuI	CTGGAG	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	770
HapII	CCGG	1 cut(s)	675
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	4 cut(s)	44, 583, 686, 734
HpaII	CCGG	1 cut(s)	675
HphI	GGTGA	3 cut(s)	371, 419, 490
Hpy166II	GTNNAC	1 cut(s)	809
Hpy188I	TCNGA	5 cut(s)	35, 91, 290, 370, 733
Hpy188III	TCNNGA	8 cut(s)	152, 203, 224, 495, 517, 675, 818, 853
Hpy8I	GTNNAC	1 cut(s)	809
HpyAV	CCTTC	3 cut(s)	221, 356, 616
HpyCH4III	ACNGT	4 cut(s)	220, 286, 473, 761
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	3 cut(s)	98, 239, 740
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 698, 707
HpyF3I	CTNAG	3 cut(s)	139, 537, 688
HpySE526I	ACGT	1 cut(s)	100
Kpn2I	TCCGGA	1 cut(s)	674
KpnI	GGTACC	1 cut(s)	656
Kzo9I	GATC	3 cut(s)	513, 592, 849
Lsp1109I	GCAGC	4 cut(s)	46, 82, 176, 688
LweI	GCATC	2 cut(s)	226, 534
MaeII	ACGT	1 cut(s)	100
MaeIII	GTNAC	4 cut(s)	48, 111, 277, 478
MalI	GATC	3 cut(s)	515, 594, 851
MboI	GATC	3 cut(s)	513, 592, 849
MboII	GAAGA	4 cut(s)	257, 553, 583, 737
MluCI	AATT	4 cut(s)	116, 487, 776, 827
MlyI	GAGTC	2 cut(s)	38, 680
MmeI	TCCRAC	1 cut(s)	663
MroI	TCCGGA	1 cut(s)	674
MseI	TTAA	3 cut(s)	158, 327, 632
MslI	CAYNNNNRTG	2 cut(s)	103, 302
MspI	CCGG	1 cut(s)	675
MvnI	CGCG	1 cut(s)	609
MwoI	GCNNNNNNNGC	3 cut(s)	65, 698, 707
NdeI	CATATG	1 cut(s)	271
NdeII	GATC	3 cut(s)	513, 592, 849
NlaIV	GGNNCC	2 cut(s)	408, 654
NmuCI	GTSAC	4 cut(s)	48, 111, 277, 478
OliI	CACNNNNGTG	1 cut(s)	103
PaeR7I	CTCGAG	1 cut(s)	464
PfeI	GAWTC	2 cut(s)	583, 734
PkrI	GCNGC	4 cut(s)	61, 97, 166, 703
PleI	GAGTC	2 cut(s)	38, 680
PpsI	GAGTC	2 cut(s)	38, 680
PshAI	GACNNNNGTC	1 cut(s)	284
PspN4I	GGNNCC	2 cut(s)	408, 654
PspPI	GGNCC	2 cut(s)	349, 768
PspXI	VCTCGAGB	1 cut(s)	464
PstNI	CAGNNNCTG	2 cut(s)	95, 737
RsaI	GTAC	5 cut(s)	12, 470, 654, 755, 810
RsaNI	GTAC	5 cut(s)	11, 469, 653, 754, 809
RseI	CAYNNNNRTG	2 cut(s)	103, 302
SaqAI	TTAA	3 cut(s)	158, 327, 632
SatI	GCNGC	4 cut(s)	60, 96, 165, 702
Sau3AI	GATC	3 cut(s)	513, 592, 849
Sau96I	GGNCC	2 cut(s)	349, 768
SchI	GAGTC	2 cut(s)	38, 680
SetI	ASST	9 cut(s)	97, 103, 128, 367, 440, 450, 654, 790, 840
SfaNI	GCATC	2 cut(s)	226, 534
Sfr274I	CTCGAG	1 cut(s)	464
SinI	GGWCC	1 cut(s)	349
SlaI	CTCGAG	1 cut(s)	464
SmiMI	CAYNNNNRTG	2 cut(s)	103, 302
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
Sse9I	AATT	4 cut(s)	116, 487, 776, 827
TaaI	ACNGT	4 cut(s)	220, 286, 473, 761
TaiI	ACGT	1 cut(s)	103
TaqI	TCGA	3 cut(s)	465, 581, 819
TasI	AATT	4 cut(s)	116, 487, 776, 827
TfiI	GAWTC	2 cut(s)	583, 734
Tru1I	TTAA	3 cut(s)	158, 327, 632
Tru9I	TTAA	3 cut(s)	158, 327, 632
TscAI	CASTG	2 cut(s)	110, 289
TseFI	GTSAC	4 cut(s)	48, 111, 277, 478
TseI	GCWGC	4 cut(s)	59, 95, 164, 701
Tsp45I	GTSAC	4 cut(s)	48, 111, 277, 478
TspDTI	ATGAA	4 cut(s)	387, 480, 737, 820
TspRI	CASTG	2 cut(s)	110, 289
VpaK11BI	GGWCC	1 cut(s)	349
XapI	RAATTY	2 cut(s)	487, 827
XcmI	CCANNNNNNNNNTGG	1 cut(s)	562
XhoI	CTCGAG	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.