Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Forward (+)

26149314 .. 26150311

Gene Structure 998 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48735

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGATGGCGCTTGATACTGGGAGTGACCTGTTTTGGGTGTCTTGTGAAGGAACAGCTTATGCTCCTAATTTCGAGGTCAGCAAATATGACCCCAAAGGGTCATCGACTAGCAAGAAAGTCCATTGCAGCGTAATAAATGTCTGGGAGCATTCAACACTCGCCCTTATAGGGTCTCTTATGTCTCTGATCAAACTTCTACTTCTGGGATATTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alba TAXi_C TAXi_N

Protein Analysis

71

Amino Acids

7.84

Weight (kDa)

6.0

Isoelectric Point (pI)

17.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	2 - 43	1.8e-06	Xylanase inhibitor N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	2 cut(s)	34, 168
AgsI	TTSAA	1 cut(s)	153
AluBI	AGCT	1 cut(s)	56
AluI	AGCT	1 cut(s)	56
Alw26I	GTCTC	2 cut(s)	177, 186
ApeKI	GCWGC	1 cut(s)	126
AspLEI	GCGC	1 cut(s)	10
BbvI	GCAGC	1 cut(s)	138
BclI	TGATCA	1 cut(s)	186
BcoDI	GTCTC	2 cut(s)	177, 186
BfaI	CTAG	1 cut(s)	108
BfoI	RGCGCY	1 cut(s)	11
BisI	GCNGC	1 cut(s)	127
BlsI	GCNGC	1 cut(s)	128
BmrI	ACTGGG	1 cut(s)	27
BmuI	ACTGGG	1 cut(s)	27
BsaI	GGTCTC	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 168
Bse1I	ACTGG	1 cut(s)	22
Bse3DI	GCAATG	1 cut(s)	121
BseLI	CCNNNNNNNGG	2 cut(s)	34, 168
BseMI	GCAATG	1 cut(s)	121
BseNI	ACTGG	1 cut(s)	22
BseXI	GCAGC	1 cut(s)	138
BslI	CCNNNNNNNGG	2 cut(s)	34, 168
BsmAI	GTCTC	2 cut(s)	177, 186
BsmI	GAATGC	1 cut(s)	148
Bso31I	GGTCTC	1 cut(s)	177
Bsp143I	GATC	1 cut(s)	186
BspTNI	GGTCTC	1 cut(s)	177
BsrDI	GCAATG	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	22
BssMI	GATC	1 cut(s)	186
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	1 cut(s)	189
BstMAI	GTCTC	2 cut(s)	177, 186
BstMBI	GATC	1 cut(s)	186
BstV1I	GCAGC	1 cut(s)	138
CfoI	GCGC	1 cut(s)	10
CviJI	RGCY	1 cut(s)	56
CviKI_1	RGCY	1 cut(s)	56
DpnI	GATC	1 cut(s)	188
DpnII	GATC	1 cut(s)	186
Eco31I	GGTCTC	1 cut(s)	177
FaiI	YATR	4 cut(s)	60, 87, 167, 179
FbaI	TGATCA	1 cut(s)	186
Fnu4HI	GCNGC	1 cut(s)	127
Fsp4HI	GCNGC	1 cut(s)	127
FspBI	CTAG	1 cut(s)	108
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	1 cut(s)	127
HaeII	RGCGCY	1 cut(s)	11
HhaI	GCGC	1 cut(s)	10
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
Hpy188I	TCNGA	1 cut(s)	186
HpyAV	CCTTC	1 cut(s)	41
HpyCH4V	TGCA	1 cut(s)	126
HspAI	GCGC	1 cut(s)	8
Ksp22I	TGATCA	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	186
LmnI	GCTCC	2 cut(s)	67, 145
LpnPI	CCDG	4 cut(s)	3, 41, 127, 188
Lsp1109I	GCAGC	1 cut(s)	138
MaeI	CTAG	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	1 cut(s)	188
MboI	GATC	1 cut(s)	186
MluCI	AATT	1 cut(s)	67
MnlI	CCTC	1 cut(s)	67
Mva1269I	GAATGC	1 cut(s)	148
NdeII	GATC	1 cut(s)	186
NmuCI	GTSAC	1 cut(s)	23
PctI	GAATGC	1 cut(s)	148
PkrI	GCNGC	1 cut(s)	128
SatI	GCNGC	1 cut(s)	127
Sau3AI	GATC	1 cut(s)	186
SetI	ASST	3 cut(s)	30, 58, 78
SgeI	CNNG	9 cut(s)	23, 30, 40, 54, 85, 120, 124, 154, 170
Sse9I	AATT	1 cut(s)	67
SspMI	CTAG	1 cut(s)	108
TaqI	TCGA	2 cut(s)	72, 104
TasI	AATT	1 cut(s)	67
TseFI	GTSAC	1 cut(s)	23
TseI	GCWGC	1 cut(s)	126
Tsp45I	GTSAC	1 cut(s)	23
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.