Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Forward (+)

25205426 .. 25208558

Gene Structure 3133 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G019190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGGGAAGAATTTGTTGACATGTTGGATGGGATGTTCTCCTTTGACCTCCTTGATACAAGAGAGAAACACTTTCATGGTGGCTCGAGATCCTATTGGCATTACCCCACTTTACATGGGTTGGGGTCTTGATGGATCAATTTGGTTTGCTTCAGAAATGAAAGCTATAAGTGATGATTGTGAAAGATTCATATCTTTTCCTCCTGGGCATCTATACTCTAGCAAACAAGGAGGGCTGAGAAGTTGGTACAATCCAGAATGGTTTTTGGAGAAGATACCATCATCTCCTTATGATCCCATTGTTTTATGCGAGGCTTTTGAGAAGGCTGTGTTAAAGAGACTTATGACAGATGTACCATTCGGTGTTCTTTTGTCCGGAGGATTGGACTCGTCACTCGTTGCTGCTGTGGCTTGTCACTATTTGGGTTCTTCAGATTTAAAAGCAGCAAGAGAAGTTGCTGATTATCTTGGAACTCATCATCATGAGTTTCACTTTACTGTTCAGGTAATTTATAAGGGATGTAAGAAGAATACTTTTACTAATGCTCAAGGTGGAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

186

Amino Acids

20.66

Weight (kDa)

6.28

Isoelectric Point (pI)

42.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase_7	PF13537	20 - 57	1.7e-08	Glutamine amidotransferase domain
DUF3700	PF12481	22 - 95	3.6e-08	Aluminium induced protein
Asn_synthase	PF00733	104 - 168	1.1e-15	Asparagine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	513
AccIII	TCCGGA	1 cut(s)	374
AclWI	GGATC	3 cut(s)	83, 142, 287
AcsI	RAATTY	1 cut(s)	10
AcuI	CTGAAG	2 cut(s)	135, 414
AfaI	GTAC	2 cut(s)	248, 354
AflIII	ACRYGT	1 cut(s)	20
AjnI	CCWGG	1 cut(s)	202
AloI	GAACNNNNNNTCC	2 cut(s)	19, 51
AluBI	AGCT	1 cut(s)	164
AluI	AGCT	1 cut(s)	164
Alw26I	GTCTC	1 cut(s)	331
AlwI	GGATC	3 cut(s)	83, 142, 287
Ama87I	CYCGRG	1 cut(s)	84
Aor13HI	TCCGGA	1 cut(s)	374
ApeKI	GCWGC	2 cut(s)	401, 443
ApoI	RAATTY	1 cut(s)	10
AvaI	CYCGRG	1 cut(s)	84
BaeI	ACNNNNGTAYC	2 cut(s)	336, 369
BbvI	GCAGC	2 cut(s)	388, 455
BccI	CCATC	3 cut(s)	22, 125, 286
BciT130I	CCWGG	1 cut(s)	204
BcoDI	GTCTC	1 cut(s)	331
BfaI	CTAG	1 cut(s)	219
BisI	GCNGC	2 cut(s)	402, 444
BlsI	GCNGC	2 cut(s)	403, 445
Bme1390I	CCNGG	1 cut(s)	204
BmeT110I	CYCGRG	1 cut(s)	84
BmrFI	CCNGG	1 cut(s)	204
BmsI	GCATC	1 cut(s)	217
BpuEI	CTTGAG	1 cut(s)	531
BsaBI	GATNNNNATC	1 cut(s)	190
BsaJI	CCNNGG	1 cut(s)	203
BsaWI	WCCGGW	1 cut(s)	374
Bse8I	GATNNNNATC	1 cut(s)	190
BseAI	TCCGGA	1 cut(s)	374
BseBI	CCWGG	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	203
BseGI	GGATG	3 cut(s)	33, 38, 524
BseJI	GATNNNNATC	1 cut(s)	190
BseMII	CTCAG	1 cut(s)	227
BseXI	GCAGC	2 cut(s)	388, 455
BsiHKCI	CYCGRG	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	375
BsmAI	GTCTC	1 cut(s)	331
BsoBI	CYCGRG	1 cut(s)	84
Bsp13I	TCCGGA	1 cut(s)	374
Bsp143I	GATC	3 cut(s)	88, 134, 292
BspCNI	CTCAG	1 cut(s)	228
BspEI	TCCGGA	1 cut(s)	374
BspHI	TCATGA	1 cut(s)	481
BspPI	GGATC	3 cut(s)	83, 142, 287
BssECI	CCNNGG	1 cut(s)	203
BssMI	GATC	3 cut(s)	88, 134, 292
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	1 cut(s)	499
BstDEI	CTNAG	1 cut(s)	236
BstF5I	GGATG	3 cut(s)	33, 38, 524
BstKTI	GATC	3 cut(s)	91, 137, 295
BstMAI	GTCTC	1 cut(s)	331
BstMBI	GATC	3 cut(s)	88, 134, 292
BstMWI	GCNNNNNNNGC	1 cut(s)	407
BstNI	CCWGG	1 cut(s)	204
BstNSI	RCATGY	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	202
BstV1I	GCAGC	2 cut(s)	388, 455
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
BtsCI	GGATG	3 cut(s)	33, 38, 524
CciI	TCATGA	1 cut(s)	481
Csp6I	GTAC	2 cut(s)	247, 353
CviAII	CATG	4 cut(s)	21, 76, 115, 482
CviJI	RGCY	6 cut(s)	83, 164, 235, 314, 326, 410
CviKI_1	RGCY	6 cut(s)	83, 164, 235, 314, 326, 410
CviQI	GTAC	2 cut(s)	247, 353
DdeI	CTNAG	1 cut(s)	236
DpnI	GATC	3 cut(s)	90, 136, 294
DpnII	GATC	3 cut(s)	88, 134, 292
DraI	TTTAAA	1 cut(s)	438
Eco57I	CTGAAG	2 cut(s)	135, 414
Eco88I	CYCGRG	1 cut(s)	84
EcoRII	CCWGG	1 cut(s)	202
FaeI	CATG	4 cut(s)	24, 79, 118, 485
FatI	CATG	4 cut(s)	20, 75, 114, 481
Fnu4HI	GCNGC	2 cut(s)	402, 444
FokI	GGATG	3 cut(s)	40, 45, 531
Fsp4HI	GCNGC	2 cut(s)	402, 444
FspBI	CTAG	1 cut(s)	219
GluI	GCNGC	2 cut(s)	402, 444
HapII	CCGG	1 cut(s)	375
Hin1II	CATG	4 cut(s)	24, 79, 118, 485
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HinfI	GANTC	2 cut(s)	186, 386
HpaII	CCGG	1 cut(s)	375
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188I	TCNGA	2 cut(s)	154, 433
Hpy188III	TCNNGA	5 cut(s)	86, 128, 254, 375, 482
Hpy8I	GTNNAC	1 cut(s)	18
HpyAV	CCTTC	1 cut(s)	316
HpyCH4III	ACNGT	1 cut(s)	499
HpyF10VI	GCNNNNNNNGC	1 cut(s)	407
HpyF3I	CTNAG	1 cut(s)	236
Hsp92II	CATG	4 cut(s)	24, 79, 118, 485
Kpn2I	TCCGGA	1 cut(s)	374
Kzo9I	GATC	3 cut(s)	88, 134, 292
LpnPI	CCDG	5 cut(s)	189, 216, 267, 388, 488
Lsp1109I	GCAGC	2 cut(s)	388, 455
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	1 cut(s)	219
MaeIII	GTNAC	2 cut(s)	390, 413
MalI	GATC	3 cut(s)	90, 136, 294
MboI	GATC	3 cut(s)	88, 134, 292
MboII	GAAGA	4 cut(s)	19, 283, 420, 538
MflI	RGATCY	1 cut(s)	88
MluCI	AATT	4 cut(s)	10, 138, 507, 556
MlyI	GAGTC	1 cut(s)	380
MmeI	TCCRAC	1 cut(s)	5
MnlI	CCTC	5 cut(s)	58, 210, 224, 304, 371
MroI	TCCGGA	1 cut(s)	374
MseI	TTAA	2 cut(s)	332, 437
MslI	CAYNNNNRTG	2 cut(s)	74, 480
MspI	CCGG	1 cut(s)	375
MspR9I	CCNGG	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	204
MwoI	GCNNNNNNNGC	1 cut(s)	407
NdeII	GATC	3 cut(s)	88, 134, 292
NlaIII	CATG	4 cut(s)	24, 79, 118, 485
NmuCI	GTSAC	2 cut(s)	390, 413
NspI	RCATGY	1 cut(s)	24
PaeR7I	CTCGAG	1 cut(s)	84
PagI	TCATGA	1 cut(s)	481
PciI	ACATGT	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	186
PkrI	GCNGC	2 cut(s)	403, 445
PleI	GAGTC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	380
PscI	ACATGT	1 cut(s)	20
PsiI	TTATAA	1 cut(s)	513
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PsuI	RGATCY	1 cut(s)	88
RsaI	GTAC	2 cut(s)	248, 354
RsaNI	GTAC	2 cut(s)	247, 353
RseI	CAYNNNNRTG	2 cut(s)	74, 480
SaqAI	TTAA	2 cut(s)	332, 437
SatI	GCNGC	2 cut(s)	402, 444
Sau3AI	GATC	3 cut(s)	88, 134, 292
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	1 cut(s)	204
SetI	ASST	4 cut(s)	50, 166, 507, 553
SfaNI	GCATC	1 cut(s)	217
Sfr274I	CTCGAG	1 cut(s)	84
SlaI	CTCGAG	1 cut(s)	84
SmiMI	CAYNNNNRTG	2 cut(s)	74, 480
SmlI	CTYRAG	2 cut(s)	84, 546
SmoI	CTYRAG	2 cut(s)	84, 546
Sse9I	AATT	4 cut(s)	10, 138, 507, 556
SspMI	CTAG	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	202
TaaI	ACNGT	1 cut(s)	499
TaqI	TCGA	1 cut(s)	85
TasI	AATT	4 cut(s)	10, 138, 507, 556
TfiI	GAWTC	1 cut(s)	186
Tru1I	TTAA	2 cut(s)	332, 437
Tru9I	TTAA	2 cut(s)	332, 437
TseFI	GTSAC	2 cut(s)	390, 413
TseI	GCWGC	2 cut(s)	401, 443
Tsp45I	GTSAC	2 cut(s)	390, 413
TspDTI	ATGAA	3 cut(s)	64, 173, 178
XapI	RAATTY	1 cut(s)	10
XceI	RCATGY	1 cut(s)	24
XhoI	CTCGAG	1 cut(s)	84
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.