Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011941.1

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Forward (+)

88349 .. 94469

Gene Structure 6121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011941.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

atgggaaagactgggcattcaagagagacaactctcaggccaagcggtctcgcattatcgaactctcgcgccggttgcggcatcgcggtcctgattagagagggttgcattgccatggggattgttgccttgctcatcagcgattggctattatggaccctgcctcaagagatcagccactctacaacgaggacaagaccgtcattgtcacggttaatggtgagatatataaccacaagcagatcaatttggtttgcttcagaaatgaaagctataagtgatgattgtgaaagattcatatcttttcctcctgggcatctatactctagcaaacaaggagggctgagaaggtggtacaatccacaatggtttttggagaagataccatcgactccttatcatcccattgttttacgcgaggcttttgagaaggaaggcatagatgcacttgaagaagttatctaccatattgagacatatgatgtgaccactgtcagagccagcactccaatgtttcatatgtctcgtaagattaaatctctgggagtaaaaatggtcctttctggtgaaggttcagatgaaatctttggtggctacttgtatttccacaaggcaccaaacaaggaggagtttcaccaagaaacatggcagaagcttggggtgttgaggctcgagtaccgtttcttgacaaagaattcatcaagactgctatggacgtacattgatccagaatggaaaatgatcaggcctgatcttgggagaattgagaagtgggtcttgcacaaagcatttgatgatgatcagaagccatatttaccaaagaatgctgcaagattgacagttttcggtggtccaagtgtggcatgcagcacagcaaaagctgtggagtgggatgcggaatggttcaagaaccctgatccatctggtcgtgctgcacttggtatacatgcagctgcgtatgaggaatccaaagatgggaaggctggaagtcttgtgagtgactctccacagaaacttgtaaaaggggttgcagagaaagtggctgcagtagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

351

Amino Acids

39.61

Weight (kDa)

8.97

Isoelectric Point (pI)

43.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	199
AccB1I	GGYRCC	1 cut(s)	613
AccI	GTMKAC	1 cut(s)	943
AccII	CGCG	3 cut(s)	69, 86, 417
AciI	CCGC	4 cut(s)	45, 78, 86, 896
AclWI	GGATC	2 cut(s)	719, 911
AcsI	RAATTY	1 cut(s)	694
AcuI	CTGAAG	1 cut(s)	243
AfaI	GTAC	3 cut(s)	356, 677, 719
AfiI	CCNNNNNNNGG	2 cut(s)	755, 975
AgsI	TTSAA	3 cut(s)	21, 452, 907
AjnI	CCWGG	1 cut(s)	310
AluBI	AGCT	4 cut(s)	272, 655, 881, 953
AluI	AGCT	4 cut(s)	272, 655, 881, 953
Alw26I	GTCTC	4 cut(s)	20, 53, 467, 528
AlwI	GGATC	2 cut(s)	719, 911
Ama87I	CYCGRG	1 cut(s)	671
AoxI	GGCC	2 cut(s)	38, 746
ApeKI	GCWGC	6 cut(s)	827, 867, 932, 950, 953, 1043
ApoI	RAATTY	1 cut(s)	694
AspLEI	GCGC	1 cut(s)	71
AspS9I	GGNCC	4 cut(s)	88, 156, 556, 851
AsuHPI	GGTGA	3 cut(s)	232, 578, 626
AvaI	CYCGRG	1 cut(s)	671
AvaII	GGWCC	4 cut(s)	88, 156, 556, 851
BanI	GGYRCC	1 cut(s)	613
BbvI	GCAGC	6 cut(s)	814, 879, 919, 940, 962, 1030
BccI	CCATC	3 cut(s)	394, 928, 968
BciT130I	CCWGG	1 cut(s)	312
BclI	TGATCA	2 cut(s)	741, 799
BcoDI	GTCTC	4 cut(s)	20, 53, 467, 528
BfaI	CTAG	1 cut(s)	327
BfmI	CTRYAG	1 cut(s)	1044
BisI	GCNGC	7 cut(s)	79, 828, 868, 933, 951, 954, 1044
BlsI	GCNGC	7 cut(s)	80, 829, 869, 934, 952, 955, 1045
Bme1390I	CCNGG	1 cut(s)	312
Bme18I	GGWCC	4 cut(s)	88, 156, 556, 851
BmeT110I	CYCGRG	1 cut(s)	671
BmgT120I	GGNCC	4 cut(s)	88, 156, 556, 851
BmiI	GGNNCC	2 cut(s)	158, 615
BmrFI	CCNGG	1 cut(s)	312
BmrI	ACTGGG	1 cut(s)	21
BmsI	GCATC	4 cut(s)	90, 325, 433, 883
BmuI	ACTGGG	1 cut(s)	21
BoxI	GACNNNNGTC	1 cut(s)	491
BplI	GAGNNNNNCTC	2 cut(s)	988, 1020
BpuEI	CTTGAG	1 cut(s)	150
BsaBI	GATNNNNATC	2 cut(s)	298, 798
BsaI	GGTCTC	1 cut(s)	53
BsaJI	CCNNGG	2 cut(s)	114, 311
Bsc4I	CCNNNNNNNGG	2 cut(s)	755, 975
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	1 cut(s)	16
Bse3DI	GCAATG	1 cut(s)	108
Bse8I	GATNNNNATC	2 cut(s)	298, 798
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	2 cut(s)	114, 311
BseGI	GGATG	2 cut(s)	400, 898
BseJI	GATNNNNATC	2 cut(s)	298, 798
BseLI	CCNNNNNNNGG	2 cut(s)	755, 975
BseMI	GCAATG	1 cut(s)	108
BseMII	CTCAG	2 cut(s)	49, 335
BseNI	ACTGG	1 cut(s)	16
BseRI	GAGGAG	1 cut(s)	641
BseXI	GCAGC	6 cut(s)	814, 879, 919, 940, 962, 1030
BsgI	GTGCAG	1 cut(s)	918
Bsh1236I	CGCG	3 cut(s)	69, 86, 417
BshFI	GGCC	2 cut(s)	40, 748
BshNI	GGYRCC	1 cut(s)	613
BsiHKCI	CYCGRG	1 cut(s)	671
BsiSI	CCGG	1 cut(s)	72
BslI	CCNNNNNNNGG	2 cut(s)	755, 975
BsmAI	GTCTC	4 cut(s)	20, 53, 467, 528
BsmI	GAATGC	2 cut(s)	16, 829
BsnI	GGCC	2 cut(s)	40, 748
Bso31I	GGTCTC	1 cut(s)	53
BsoBI	CYCGRG	1 cut(s)	671
Bsp143I	GATC	7 cut(s)	171, 242, 724, 741, 751, 799, 916
Bsp19I	CCATGG	1 cut(s)	114
BspACI	CCGC	4 cut(s)	45, 78, 86, 896
BspANI	GGCC	2 cut(s)	40, 748
BspCNI	CTCAG	2 cut(s)	48, 336
BspFNI	CGCG	3 cut(s)	69, 86, 417
BspLI	GGNNCC	2 cut(s)	158, 615
BspMAI	CTGCAG	1 cut(s)	1048
BspPI	GGATC	2 cut(s)	719, 911
BspT107I	GGYRCC	1 cut(s)	613
BspTNI	GGTCTC	1 cut(s)	53
BsrDI	GCAATG	1 cut(s)	108
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	1 cut(s)	16
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	2 cut(s)	114, 311
BssMI	GATC	7 cut(s)	171, 242, 724, 741, 751, 799, 916
BssNAI	GTATAC	1 cut(s)	944
BssT1I	CCWWGG	1 cut(s)	114
Bst1107I	GTATAC	1 cut(s)	944
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	5 cut(s)	201, 213, 493, 680, 841
BstC8I	GCNNGC	2 cut(s)	502, 865
BstDEI	CTNAG	2 cut(s)	35, 344
BstDSI	CCRYGG	1 cut(s)	114
BstF5I	GGATG	2 cut(s)	400, 898
BstFNI	CGCG	3 cut(s)	69, 86, 417
BstHHI	GCGC	1 cut(s)	71
BstKTI	GATC	7 cut(s)	174, 245, 727, 744, 754, 802, 919
BstMAI	GTCTC	4 cut(s)	20, 53, 467, 528
BstMBI	GATC	7 cut(s)	171, 242, 724, 741, 751, 799, 916
BstMWI	GCNNNNNNNGC	1 cut(s)	75
BstNI	CCWGG	1 cut(s)	312
BstNSI	RCATGY	2 cut(s)	867, 950
BstPAI	GACNNNNGTC	1 cut(s)	491
BstSCI	CCNGG	1 cut(s)	310
BstSFI	CTRYAG	1 cut(s)	1044
BstUI	CGCG	3 cut(s)	69, 86, 417
BstV1I	GCAGC	6 cut(s)	814, 879, 919, 940, 962, 1030
BstZ17I	GTATAC	1 cut(s)	944
BsuRI	GGCC	2 cut(s)	40, 748
BtgI	CCRYGG	1 cut(s)	114
BtgZI	GCGATG	1 cut(s)	67
BtsCI	GGATG	2 cut(s)	400, 898
BtsIMutI	CAGTG	1 cut(s)	489
Cac8I	GCNNGC	2 cut(s)	502, 865
CfoI	GCGC	1 cut(s)	71
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	4 cut(s)	88, 156, 556, 851
Csp6I	GTAC	3 cut(s)	355, 676, 718
CspCI	CAANNNNNGTGG	2 cut(s)	864, 899
CviAII	CATG	4 cut(s)	115, 645, 864, 947
CviQI	GTAC	3 cut(s)	355, 676, 718
DdeI	CTNAG	2 cut(s)	35, 344
DpnI	GATC	7 cut(s)	173, 244, 726, 743, 753, 801, 918
DpnII	GATC	7 cut(s)	171, 242, 724, 741, 751, 799, 916
DrdI	GACNNNNNNGTC	1 cut(s)	199
DseDI	GACNNNNNNGTC	1 cut(s)	199
Eco130I	CCWWGG	1 cut(s)	114
Eco147I	AGGCCT	1 cut(s)	748
Eco31I	GGTCTC	1 cut(s)	53
Eco47I	GGWCC	4 cut(s)	88, 156, 556, 851
Eco57I	CTGAAG	1 cut(s)	243
Eco88I	CYCGRG	1 cut(s)	671
EcoRI	GAATTC	1 cut(s)	694
EcoRII	CCWGG	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	4 cut(s)	118, 648, 867, 950
FalI	AAGNNNNNCTT	2 cut(s)	761, 793
FatI	CATG	4 cut(s)	114, 644, 863, 946
FauNDI	CATATG	2 cut(s)	478, 519
FbaI	TGATCA	2 cut(s)	741, 799
FblI	GTMKAC	1 cut(s)	943
Fnu4HI	GCNGC	7 cut(s)	79, 828, 868, 933, 951, 954, 1044
FokI	GGATG	2 cut(s)	387, 905
Fsp4HI	GCNGC	7 cut(s)	79, 828, 868, 933, 951, 954, 1044
FspBI	CTAG	1 cut(s)	327
GlaI	GCGC	1 cut(s)	70
GluI	GCNGC	7 cut(s)	79, 828, 868, 933, 951, 954, 1044
HaeIII	GGCC	2 cut(s)	40, 748
HapII	CCGG	1 cut(s)	72
HhaI	GCGC	1 cut(s)	71
Hin1II	CATG	4 cut(s)	118, 648, 867, 950
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HindIII	AAGCTT	1 cut(s)	653
HinfI	GANTC	4 cut(s)	294, 391, 965, 1001
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	3 cut(s)	232, 578, 626
Hpy166II	GTNNAC	1 cut(s)	944
Hpy188I	TCNGA	4 cut(s)	262, 497, 577, 804
Hpy188III	TCNNGA	7 cut(s)	21, 91, 167, 685, 702, 728, 907
Hpy8I	GTNNAC	1 cut(s)	944
HpyAV	CCTTC	5 cut(s)	342, 424, 428, 563, 973
HpyCH4III	ACNGT	5 cut(s)	201, 213, 493, 680, 841
HpyCH4IV	ACGT	1 cut(s)	716
HpyCH4V	TGCA	9 cut(s)	108, 446, 781, 830, 867, 935, 950, 1031, 1046
HpyF10VI	GCNNNNNNNGC	1 cut(s)	75
HpyF3I	CTNAG	2 cut(s)	35, 344
HpySE526I	ACGT	1 cut(s)	716
Hsp92II	CATG	4 cut(s)	118, 648, 867, 950
HspAI	GCGC	1 cut(s)	69
Ksp22I	TGATCA	2 cut(s)	741, 799
Kzo9I	GATC	7 cut(s)	171, 242, 724, 741, 751, 799, 916
Lsp1109I	GCAGC	6 cut(s)	814, 879, 919, 940, 962, 1030
LweI	GCATC	4 cut(s)	90, 325, 433, 883
MaeI	CTAG	1 cut(s)	327
MaeII	ACGT	1 cut(s)	716
MaeIII	GTNAC	3 cut(s)	207, 484, 998
MalI	GATC	7 cut(s)	173, 244, 726, 743, 753, 801, 918
MboI	GATC	7 cut(s)	171, 242, 724, 741, 751, 799, 916
MboII	GAAGA	2 cut(s)	391, 464
MluCI	AATT	3 cut(s)	246, 694, 762
MlyI	GAGTC	2 cut(s)	385, 995
MnlI	CCTC	9 cut(s)	94, 174, 183, 318, 332, 412, 619, 660, 955
MseI	TTAA	2 cut(s)	215, 534
MslI	CAYNNNNRTG	2 cut(s)	113, 509
MspA1I	CMGCKG	1 cut(s)	953
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	312
Mva1269I	GAATGC	2 cut(s)	16, 829
MvaI	CCWGG	1 cut(s)	312
MvnI	CGCG	3 cut(s)	69, 86, 417
MwoI	GCNNNNNNNGC	1 cut(s)	75
NcoI	CCATGG	1 cut(s)	114
NdeI	CATATG	2 cut(s)	478, 519
NdeII	GATC	7 cut(s)	171, 242, 724, 741, 751, 799, 916
NlaIII	CATG	4 cut(s)	118, 648, 867, 950
NlaIV	GGNNCC	2 cut(s)	158, 615
NmuCI	GTSAC	3 cut(s)	207, 484, 998
NspI	RCATGY	2 cut(s)	867, 950
PaeI	GCATGC	1 cut(s)	867
PaeR7I	CTCGAG	1 cut(s)	671
PceI	AGGCCT	1 cut(s)	748
PctI	GAATGC	2 cut(s)	16, 829
PfeI	GAWTC	2 cut(s)	294, 965
PkrI	GCNGC	7 cut(s)	80, 829, 869, 934, 952, 955, 1045
PleI	GAGTC	2 cut(s)	385, 995
PpsI	GAGTC	2 cut(s)	385, 995
PshAI	GACNNNNGTC	1 cut(s)	491
Psp6I	CCWGG	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	2 cut(s)	158, 615
PspPI	GGNCC	4 cut(s)	88, 156, 556, 851
PspXI	VCTCGAGB	1 cut(s)	671
PstI	CTGCAG	1 cut(s)	1048
PvuII	CAGCTG	1 cut(s)	953
RsaI	GTAC	3 cut(s)	356, 677, 719
RsaNI	GTAC	3 cut(s)	355, 676, 718
RseI	CAYNNNNRTG	2 cut(s)	113, 509
SaqAI	TTAA	2 cut(s)	215, 534
SatI	GCNGC	7 cut(s)	79, 828, 868, 933, 951, 954, 1044
Sau3AI	GATC	7 cut(s)	171, 242, 724, 741, 751, 799, 916
Sau96I	GGNCC	4 cut(s)	88, 156, 556, 851
SchI	GAGTC	2 cut(s)	385, 995
ScrFI	CCNGG	1 cut(s)	312
SetI	ASST	7 cut(s)	274, 353, 574, 657, 719, 883, 955
SfaNI	GCATC	4 cut(s)	90, 325, 433, 883
SfcI	CTRYAG	1 cut(s)	1044
Sfr274I	CTCGAG	1 cut(s)	671
SinI	GGWCC	4 cut(s)	88, 156, 556, 851
SlaI	CTCGAG	1 cut(s)	671
SmiMI	CAYNNNNRTG	2 cut(s)	113, 509
SmlI	CTYRAG	2 cut(s)	165, 671
SmoI	CTYRAG	2 cut(s)	165, 671
SphI	GCATGC	1 cut(s)	867
Sse9I	AATT	3 cut(s)	246, 694, 762
SseBI	AGGCCT	1 cut(s)	748
SsiI	CCGC	4 cut(s)	45, 78, 86, 896
SspMI	CTAG	1 cut(s)	327
StuI	AGGCCT	1 cut(s)	748
StyD4I	CCNGG	1 cut(s)	310
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	5 cut(s)	201, 213, 493, 680, 841
TaiI	ACGT	1 cut(s)	719
TaqI	TCGA	3 cut(s)	59, 389, 672
TasI	AATT	3 cut(s)	246, 694, 762
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	2 cut(s)	294, 965
Tru1I	TTAA	2 cut(s)	215, 534
Tru9I	TTAA	2 cut(s)	215, 534
TscAI	CASTG	1 cut(s)	496
TseFI	GTSAC	3 cut(s)	207, 484, 998
TseI	GCWGC	6 cut(s)	827, 867, 932, 950, 953, 1043
Tsp45I	GTSAC	3 cut(s)	207, 484, 998
TspDTI	ATGAA	5 cut(s)	281, 286, 506, 594, 687
TspRI	CASTG	1 cut(s)	496
VpaK11BI	GGWCC	4 cut(s)	88, 156, 556, 851
XapI	RAATTY	1 cut(s)	694
XceI	RCATGY	2 cut(s)	867, 950
XhoI	CTCGAG	1 cut(s)	671
XmiI	GTMKAC	1 cut(s)	943
XspI	CTAG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.