RchiOBHm_Chr2g0113641

Glutamine amidotransferase domain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
25805211 .. 25806873
1663 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48698

Sequence Viewer

Length: 630 bp
ATGTACCATTCGGTGTTCTTTAGTCCGGAGGATTGGACTCATCACTCGTTGCTGCTGTGGCTTGTCGCTATTTGGCTAAATCAGAAGCTGCATGTCAGTGGGGGTCACAATTACATACCTTTTGCGTTGGCTTGGAGGTTAAGGGAAAGGTTCTTGGTCTTGGTGTTCAATTGTCTTTGCTATGCAAACTTTGGTACCGGAAAGGGTTCACCAGATTTAAAAGCAGCAAGAGAAGTTGCTGATTATCATGGAACTCATCATCACGAGTTTCACTTTACTATTCAGGAAGGCATAGATGCACTTGAAGAAGTTATCTACCATATTGAGACATATGATGTGACCACTGTCAGAGCCAGCACTCCAATGTTTCTTATGTCTCGTAAGATTAAATCTCTGGGAGTAAAAATGGTCCTTTCTGGTGAAGGTTCAGATGAAATCTTTGGTGGCTACTTGTATTTCCACGAGGCACCAAACAAGGAGGAGTTTCACCAAGAAACATGGCAGAAGATTAAAGCTCTTCATCTGTACGACTGTCTGAGGGCCAACAAATCGACTTCAGCTTGGGGTGTTGAGGCTCGAGTACCGTTTCTTGACAAAGAATTCATCAAGACTGCTATGGACGTACATTGA

Protein Analysis

209

Amino Acids

24.22

Weight (kDa)

6.29

Isoelectric Point (pI)

38.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asn_synthase PF00733 67 - 159 1e-29 Asparagine synthase
Asn_synthase PF00733 157 - 208 4.3e-12 Asparagine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis pycom01g05790
rosa_chinensis RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 194
AccB1I GGYRCC 2 cut(s) 194, 466
AccIII TCCGGA 1 cut(s) 25
AcsI RAATTY 1 cut(s) 599
AcuI CTGAAG 1 cut(s) 540
AfaI GTAC 5 cut(s) 5, 196, 527, 582, 624
AgsI TTSAA 2 cut(s) 169, 305
AluBI AGCT 3 cut(s) 88, 515, 560
AluI AGCT 3 cut(s) 88, 515, 560
Alw26I GTCTC 2 cut(s) 320, 381
AlwNI CAGNNNCTG 1 cut(s) 88
Ama87I CYCGRG 1 cut(s) 576
Aor13HI TCCGGA 1 cut(s) 25
AoxI GGCC 1 cut(s) 540
ApeKI GCWGC 3 cut(s) 52, 88, 224
ApoI RAATTY 1 cut(s) 599
Asp700I GAANNNNTTC 1 cut(s) 205
Asp718I GGTACC 1 cut(s) 194
AspS9I GGNCC 2 cut(s) 409, 540
AsuHPI GGTGA 3 cut(s) 201, 431, 479
AvaI CYCGRG 1 cut(s) 576
AvaII GGWCC 1 cut(s) 409
BaeI ACNNNNGTAYC 2 cut(s) 178, 211
BanI GGYRCC 2 cut(s) 194, 466
BauI CACGAG 2 cut(s) 263, 461
BbvI GCAGC 3 cut(s) 39, 75, 236
BcoDI GTCTC 2 cut(s) 320, 381
BisI GCNGC 3 cut(s) 53, 89, 225
BlsI GCNGC 3 cut(s) 54, 90, 226
Bme18I GGWCC 1 cut(s) 409
BmeT110I CYCGRG 1 cut(s) 576
BmgT120I GGNCC 2 cut(s) 409, 540
BmiI GGNNCC 2 cut(s) 196, 468
BmsI GCATC 1 cut(s) 286
BoxI GACNNNNGTC 1 cut(s) 344
BsaWI WCCGGW 2 cut(s) 25, 197
BseAI TCCGGA 1 cut(s) 25
BseMII CTCAG 1 cut(s) 527
BseRI GAGGAG 1 cut(s) 494
BseXI GCAGC 3 cut(s) 39, 75, 236
BshFI GGCC 1 cut(s) 542
BshNI GGYRCC 2 cut(s) 194, 466
BsiHKCI CYCGRG 1 cut(s) 576
BsiSI CCGG 2 cut(s) 26, 198
BsmAI GTCTC 2 cut(s) 320, 381
BsnI GGCC 1 cut(s) 542
BsoBI CYCGRG 1 cut(s) 576
Bsp13I TCCGGA 1 cut(s) 25
BspANI GGCC 1 cut(s) 542
BspCNI CTCAG 1 cut(s) 528
BspEI TCCGGA 1 cut(s) 25
BspLI GGNNCC 2 cut(s) 196, 468
BspQI GCTCTTC 1 cut(s) 522
BspT107I GGYRCC 2 cut(s) 194, 466
BssSI CACGAG 2 cut(s) 263, 461
Bst2BI CACGAG 2 cut(s) 263, 461
Bst4CI ACNGT 3 cut(s) 346, 533, 585
Bst6I CTCTTC 1 cut(s) 522
BstC8I GCNNGC 1 cut(s) 355
BstDEI CTNAG 1 cut(s) 536
BstMAI GTCTC 2 cut(s) 320, 381
BstMWI GCNNNNNNNGC 1 cut(s) 58
BstNSI RCATGY 1 cut(s) 95
BstPAI GACNNNNGTC 1 cut(s) 344
BstV1I GCAGC 3 cut(s) 39, 75, 236
BsuRI GGCC 1 cut(s) 542
BtsIMutI CAGTG 2 cut(s) 103, 342
Cac8I GCNNGC 1 cut(s) 355
CaiI CAGNNNCTG 1 cut(s) 88
Cfr13I GGNCC 2 cut(s) 409, 540
Csp6I GTAC 5 cut(s) 4, 195, 526, 581, 623
CviAII CATG 3 cut(s) 92, 248, 498
CviQI GTAC 5 cut(s) 4, 195, 526, 581, 623
DdeI CTNAG 1 cut(s) 536
DraI TTTAAA 1 cut(s) 219
Eam1104I CTCTTC 1 cut(s) 522
EarI CTCTTC 1 cut(s) 522
Eco47I GGWCC 1 cut(s) 409
Eco57I CTGAAG 1 cut(s) 540
Eco88I CYCGRG 1 cut(s) 576
EcoRI GAATTC 1 cut(s) 599
FaeI CATG 3 cut(s) 95, 251, 501
FatI CATG 3 cut(s) 91, 247, 497
FauNDI CATATG 1 cut(s) 331
Fnu4HI GCNGC 3 cut(s) 53, 89, 225
Fsp4HI GCNGC 3 cut(s) 53, 89, 225
GluI GCNGC 3 cut(s) 53, 89, 225
HaeIII GGCC 1 cut(s) 542
HapII CCGG 2 cut(s) 26, 198
Hin1II CATG 3 cut(s) 95, 251, 501
HinfI GANTC 1 cut(s) 37
HpaII CCGG 2 cut(s) 26, 198
HphI GGTGA 3 cut(s) 201, 431, 479
Hpy166II GTNNAC 1 cut(s) 209
Hpy188I TCNGA 4 cut(s) 84, 350, 430, 537
Hpy188III TCNNGA 5 cut(s) 26, 263, 284, 590, 607
Hpy8I GTNNAC 1 cut(s) 209
HpyAV CCTTC 2 cut(s) 281, 416
HpyCH4III ACNGT 3 cut(s) 346, 533, 585
HpyCH4IV ACGT 1 cut(s) 621
HpyCH4V TGCA 3 cut(s) 91, 185, 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 58
HpyF3I CTNAG 1 cut(s) 536
HpySE526I ACGT 1 cut(s) 621
Hsp92II CATG 3 cut(s) 95, 251, 501
Kpn2I TCCGGA 1 cut(s) 25
KpnI GGTACC 1 cut(s) 198
LguI GCTCTTC 1 cut(s) 522
LpnPI CCDG 7 cut(s) 39, 211, 225, 269, 367, 380, 402
Lsp1109I GCAGC 3 cut(s) 39, 75, 236
LweI GCATC 1 cut(s) 286
MaeII ACGT 1 cut(s) 621
MaeIII GTNAC 2 cut(s) 104, 337
MboII GAAGA 3 cut(s) 317, 509, 517
MfeI CAATTG 1 cut(s) 169
MluCI AATT 3 cut(s) 109, 169, 599
MlyI GAGTC 1 cut(s) 31
MnlI CCTC 6 cut(s) 22, 129, 457, 472, 531, 565
MroI TCCGGA 1 cut(s) 25
MroXI GAANNNNTTC 1 cut(s) 205
MseI TTAA 4 cut(s) 140, 218, 387, 510
MslI CAYNNNNRTG 2 cut(s) 96, 362
MspI CCGG 2 cut(s) 26, 198
MunI CAATTG 1 cut(s) 169
MwoI GCNNNNNNNGC 1 cut(s) 58
NdeI CATATG 1 cut(s) 331
NlaIII CATG 3 cut(s) 95, 251, 501
NlaIV GGNNCC 2 cut(s) 196, 468
NmuCI GTSAC 2 cut(s) 104, 337
NspI RCATGY 1 cut(s) 95
PaeR7I CTCGAG 1 cut(s) 576
PciSI GCTCTTC 1 cut(s) 522
PdmI GAANNNNTTC 1 cut(s) 205
PkrI GCNGC 3 cut(s) 54, 90, 226
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
PshAI GACNNNNGTC 1 cut(s) 344
PspN4I GGNNCC 2 cut(s) 196, 468
PspPI GGNCC 2 cut(s) 409, 540
PspXI VCTCGAGB 1 cut(s) 576
PstNI CAGNNNCTG 1 cut(s) 88
RsaI GTAC 5 cut(s) 5, 196, 527, 582, 624
RsaNI GTAC 5 cut(s) 4, 195, 526, 581, 623
RseI CAYNNNNRTG 2 cut(s) 96, 362
SapI GCTCTTC 1 cut(s) 522
SaqAI TTAA 4 cut(s) 140, 218, 387, 510
SatI GCNGC 3 cut(s) 53, 89, 225
Sau96I GGNCC 2 cut(s) 409, 540
SchI GAGTC 1 cut(s) 31
SetI ASST 8 cut(s) 90, 121, 140, 152, 427, 517, 562, 624
SfaNI GCATC 1 cut(s) 286
Sfr274I CTCGAG 1 cut(s) 576
SinI GGWCC 1 cut(s) 409
SlaI CTCGAG 1 cut(s) 576
SmiMI CAYNNNNRTG 2 cut(s) 96, 362
SmlI CTYRAG 1 cut(s) 576
SmoI CTYRAG 1 cut(s) 576
Sse9I AATT 3 cut(s) 109, 169, 599
TaaI ACNGT 3 cut(s) 346, 533, 585
TaiI ACGT 1 cut(s) 624
TaqI TCGA 2 cut(s) 551, 577
TasI AATT 3 cut(s) 109, 169, 599
Tru1I TTAA 4 cut(s) 140, 218, 387, 510
Tru9I TTAA 4 cut(s) 140, 218, 387, 510
TscAI CASTG 2 cut(s) 103, 349
TseFI GTSAC 2 cut(s) 104, 337
TseI GCWGC 3 cut(s) 52, 88, 224
Tsp45I GTSAC 2 cut(s) 104, 337
TspDTI ATGAA 3 cut(s) 447, 509, 592
TspRI CASTG 2 cut(s) 103, 349
VpaK11BI GGWCC 1 cut(s) 409
XapI RAATTY 1 cut(s) 599
XceI RCATGY 1 cut(s) 95
XhoI CTCGAG 1 cut(s) 576
XmnI GAANNNNTTC 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.