Rw2G019030

Glutamine amidotransferase domain

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
24943683 .. 24945255
1573 bp
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UTR
Exon/CDS
Intron
Rw2G019030.1

Sequence Viewer

Length: 570 bp
ATGTTTCTTATGTCTCGTAAGATAAAATCTCTGGGAGTAAAAATGGTCCTTTCTGGTGAAGGTTCAGATGAAATCTTTGGTGGCTACTTGTATTTCCACAAGGCACCAAACAAGGAGGAGTTTCACCAAGAAACATGCCAGAAGATTAAAGCTCTTCACCTGTACGACTGTCTGAGGGCCAACAAATCAACTTCAGCTTGGGGTGTTGAGGCTCAAGTACCGTTTCTTGACAAAGAATTCATCAAGACTGCTATGGACATTGATCCAGAATGGAAAATGATCAGGCCTGATCTTGGGAGAATTGAGAAGTGGGTCTTGCGCAAAGCATTTGATGATGATCAGAAGCCATATTTACCAAAGCACATCTTGTACAGGCAGAAGGAGCAGTTTAGTGATGGTGTCGGTTACCGCTGGATTGACGGCTTGAAAGATCATGCCAACAAACAATTATTTCATGTCTGCTATTTCAAGCTAGAGGTGCACTTTCTTAAAAACTCAACTAAGCAGACACTAGAGATGCAGCACAGCAAAAGCTGTGGAGAGGGACGCGGAATGGTCCAAGAACCCTGA

Protein Analysis

189

Amino Acids

22.15

Weight (kDa)

8.76

Isoelectric Point (pI)

40.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asn_synthase PF00733 1 - 38 3.4e-11 Asparagine synthase
Asn_synthase PF00733 36 - 153 1.5e-28 Asparagine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis pycom01g05790
rosa_chinensis RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 320
AccB1I GGYRCC 1 cut(s) 103
AccII CGCG 1 cut(s) 549
AciI CCGC 2 cut(s) 409, 549
AclWI GGATC 1 cut(s) 257
AcsI RAATTY 1 cut(s) 236
AcuI CTGAAG 1 cut(s) 177
AfaI GTAC 3 cut(s) 164, 219, 371
AfiI CCNNNNNNNGG 1 cut(s) 293
AgsI TTSAA 2 cut(s) 427, 469
AluBI AGCT 4 cut(s) 152, 197, 472, 534
AluI AGCT 4 cut(s) 152, 197, 472, 534
Alw21I GWGCWC 1 cut(s) 483
Alw26I GTCTC 1 cut(s) 18
Alw44I GTGCAC 1 cut(s) 479
AlwI GGATC 1 cut(s) 257
AoxI GGCC 2 cut(s) 177, 284
ApaLI GTGCAC 1 cut(s) 479
ApeKI GCWGC 1 cut(s) 520
ApoI RAATTY 1 cut(s) 236
AspLEI GCGC 1 cut(s) 321
AspS9I GGNCC 3 cut(s) 46, 177, 556
AsuHPI GGTGA 3 cut(s) 68, 116, 149
AvaII GGWCC 2 cut(s) 46, 556
BaeGI GKGCMC 1 cut(s) 483
BanI GGYRCC 1 cut(s) 103
Bbv12I GWGCWC 1 cut(s) 483
BbvI GCAGC 1 cut(s) 532
BccI CCATC 1 cut(s) 389
BceAI ACGGC 1 cut(s) 436
BclI TGATCA 2 cut(s) 279, 337
BcoDI GTCTC 1 cut(s) 18
BfaI CTAG 2 cut(s) 473, 512
BisI GCNGC 1 cut(s) 521
BlsI GCNGC 1 cut(s) 522
Bme18I GGWCC 2 cut(s) 46, 556
BmgT120I GGNCC 3 cut(s) 46, 177, 556
BmiI GGNNCC 1 cut(s) 105
BmsI GCATC 1 cut(s) 507
BpuEI CTTGAG 1 cut(s) 198
BsaBI GATNNNNATC 1 cut(s) 336
Bsc4I CCNNNNNNNGG 1 cut(s) 293
Bse8I GATNNNNATC 1 cut(s) 336
BseJI GATNNNNATC 1 cut(s) 336
BseLI CCNNNNNNNGG 1 cut(s) 293
BseMII CTCAG 1 cut(s) 164
BseRI GAGGAG 1 cut(s) 131
BseSI GKGCMC 1 cut(s) 483
BseXI GCAGC 1 cut(s) 532
Bsh1236I CGCG 1 cut(s) 549
BshFI GGCC 2 cut(s) 179, 286
BshNI GGYRCC 1 cut(s) 103
BsiHKAI GWGCWC 1 cut(s) 483
BslFI GGGAC 1 cut(s) 558
BslI CCNNNNNNNGG 1 cut(s) 293
BsmAI GTCTC 1 cut(s) 18
BsmFI GGGAC 1 cut(s) 558
BsnI GGCC 2 cut(s) 179, 286
Bsp1286I GDGCHC 1 cut(s) 483
Bsp1407I TGTACA 1 cut(s) 369
Bsp143I GATC 5 cut(s) 262, 279, 289, 337, 430
BspACI CCGC 2 cut(s) 409, 549
BspANI GGCC 2 cut(s) 179, 286
BspCNI CTCAG 1 cut(s) 165
BspFNI CGCG 1 cut(s) 549
BspLI GGNNCC 1 cut(s) 105
BspPI GGATC 1 cut(s) 257
BspQI GCTCTTC 1 cut(s) 159
BspT107I GGYRCC 1 cut(s) 103
BsrGI TGTACA 1 cut(s) 369
BssMI GATC 5 cut(s) 262, 279, 289, 337, 430
Bst4CI ACNGT 2 cut(s) 170, 222
Bst6I CTCTTC 1 cut(s) 159
BstAUI TGTACA 1 cut(s) 369
BstDEI CTNAG 2 cut(s) 173, 501
BstEII GGTNACC 1 cut(s) 404
BstFNI CGCG 1 cut(s) 549
BstHHI GCGC 1 cut(s) 321
BstKTI GATC 5 cut(s) 265, 282, 292, 340, 433
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 5 cut(s) 262, 279, 289, 337, 430
BstMWI GCNNNNNNNGC 2 cut(s) 382, 478
BstNSI RCATGY 1 cut(s) 138
BstPI GGTNACC 1 cut(s) 404
BstSLI GKGCMC 1 cut(s) 483
BstUI CGCG 1 cut(s) 549
BstV1I GCAGC 1 cut(s) 532
BsuRI GGCC 2 cut(s) 179, 286
CfoI GCGC 1 cut(s) 321
Cfr13I GGNCC 3 cut(s) 46, 177, 556
CseI GACGC 1 cut(s) 555
Csp6I GTAC 3 cut(s) 163, 218, 370
CspCI CAANNNNNGTGG 2 cut(s) 517, 552
CviAII CATG 3 cut(s) 135, 434, 455
CviQI GTAC 3 cut(s) 163, 218, 370
DdeI CTNAG 2 cut(s) 173, 501
DpnI GATC 5 cut(s) 264, 281, 291, 339, 432
DpnII GATC 5 cut(s) 262, 279, 289, 337, 430
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco147I AGGCCT 1 cut(s) 286
Eco47I GGWCC 2 cut(s) 46, 556
Eco57I CTGAAG 1 cut(s) 177
Eco91I GGTNACC 1 cut(s) 404
EcoO65I GGTNACC 1 cut(s) 404
EcoRI GAATTC 1 cut(s) 236
FaeI CATG 3 cut(s) 138, 437, 458
FaiI YATR 6 cut(s) 11, 136, 254, 349, 435, 456
FalI AAGNNNNNCTT 4 cut(s) 299, 331, 350, 382
FaqI GGGAC 1 cut(s) 558
FatI CATG 3 cut(s) 134, 433, 454
FbaI TGATCA 2 cut(s) 279, 337
Fnu4HI GCNGC 1 cut(s) 521
Fsp4HI GCNGC 1 cut(s) 521
FspBI CTAG 2 cut(s) 473, 512
FspI TGCGCA 1 cut(s) 320
GlaI GCGC 1 cut(s) 320
GluI GCNGC 1 cut(s) 521
HaeIII GGCC 2 cut(s) 179, 286
HgaI GACGC 1 cut(s) 555
HhaI GCGC 1 cut(s) 321
Hin1II CATG 3 cut(s) 138, 437, 458
Hin6I GCGC 1 cut(s) 319
HinP1I GCGC 1 cut(s) 319
HphI GGTGA 3 cut(s) 68, 116, 149
Hpy166II GTNNAC 1 cut(s) 481
Hpy188I TCNGA 3 cut(s) 67, 174, 342
Hpy188III TCNNGA 3 cut(s) 227, 244, 266
Hpy8I GTNNAC 1 cut(s) 481
HpyAV CCTTC 2 cut(s) 53, 373
HpyCH4III ACNGT 2 cut(s) 170, 222
HpyCH4V TGCA 2 cut(s) 481, 520
HpyF10VI GCNNNNNNNGC 2 cut(s) 382, 478
HpyF3I CTNAG 2 cut(s) 173, 501
Hsp92II CATG 3 cut(s) 138, 437, 458
HspAI GCGC 1 cut(s) 319
Ksp22I TGATCA 2 cut(s) 279, 337
Kzo9I GATC 5 cut(s) 262, 279, 289, 337, 430
LguI GCTCTTC 1 cut(s) 159
LmnI GCTCC 1 cut(s) 382
LpnPI CCDG 9 cut(s) 17, 39, 152, 173, 268, 279, 300, 358, 397
Lsp1109I GCAGC 1 cut(s) 532
LweI GCATC 1 cut(s) 507
MaeI CTAG 2 cut(s) 473, 512
MaeIII GTNAC 1 cut(s) 404
MalI GATC 5 cut(s) 264, 281, 291, 339, 432
MboI GATC 5 cut(s) 262, 279, 289, 337, 430
MboII GAAGA 2 cut(s) 146, 154
MhlI GDGCHC 1 cut(s) 483
MluCI AATT 3 cut(s) 236, 300, 446
MnlI CCTC 5 cut(s) 109, 168, 202, 469, 535
MseI TTAA 2 cut(s) 147, 489
MspA1I CMGCKG 1 cut(s) 411
MvnI CGCG 1 cut(s) 549
MwoI GCNNNNNNNGC 2 cut(s) 382, 478
NdeII GATC 5 cut(s) 262, 279, 289, 337, 430
NlaIII CATG 3 cut(s) 138, 437, 458
NlaIV GGNNCC 1 cut(s) 105
NsbI TGCGCA 1 cut(s) 320
NspI RCATGY 1 cut(s) 138
PceI AGGCCT 1 cut(s) 286
PciSI GCTCTTC 1 cut(s) 159
PkrI GCNGC 1 cut(s) 522
PspEI GGTNACC 1 cut(s) 404
PspN4I GGNNCC 1 cut(s) 105
PspPI GGNCC 3 cut(s) 46, 177, 556
RsaI GTAC 3 cut(s) 164, 219, 371
RsaNI GTAC 3 cut(s) 163, 218, 370
SapI GCTCTTC 1 cut(s) 159
SaqAI TTAA 2 cut(s) 147, 489
SatI GCNGC 1 cut(s) 521
Sau3AI GATC 5 cut(s) 262, 279, 289, 337, 430
Sau96I GGNCC 3 cut(s) 46, 177, 556
SduI GDGCHC 1 cut(s) 483
SetI ASST 7 cut(s) 64, 154, 162, 199, 474, 480, 536
SfaNI GCATC 1 cut(s) 507
SinI GGWCC 2 cut(s) 46, 556
SmlI CTYRAG 1 cut(s) 213
SmoI CTYRAG 1 cut(s) 213
Sse9I AATT 3 cut(s) 236, 300, 446
SseBI AGGCCT 1 cut(s) 286
SsiI CCGC 2 cut(s) 409, 549
SspMI CTAG 2 cut(s) 473, 512
StuI AGGCCT 1 cut(s) 286
TaaI ACNGT 2 cut(s) 170, 222
TasI AATT 3 cut(s) 236, 300, 446
TatI WGTACW 1 cut(s) 369
Tru1I TTAA 2 cut(s) 147, 489
Tru9I TTAA 2 cut(s) 147, 489
TseI GCWGC 1 cut(s) 520
TspDTI ATGAA 3 cut(s) 84, 229, 443
VneI GTGCAC 1 cut(s) 479
VpaK11BI GGWCC 2 cut(s) 46, 556
XapI RAATTY 1 cut(s) 236
XceI RCATGY 1 cut(s) 138
XspI CTAG 2 cut(s) 473, 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.