Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018769.1

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Reverse (-)

655 .. 2541

Gene Structure 1887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018769.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atggtcctttctggtgaaggttcggatgaaatctttggtggctacttgtatttccacaaggcaccaaacaaggagaagtttcaccaagaaacatgccagaagattaaaggtcttcatctgtatgactgtctgagggccaacaaatcgacatcagctgggggtgttgaggctcgtgtactgtttcttgacaaagaatttatcaagactgctatggacattgatccagaatggaaaatggtaacagatttgatgctgatgaacgcaagctttgtctaccctgaaaacactccgactacaaaagaaggatactactataggactatctttgagaaatattttccaaagaatgctgcgagatcgacagttcctggtggtccaagtgtggcatgcagcacagcaaagctgtggagtgggatgcagaatggtccaaaaaccccgattcatctggtcgtgctgcacttggtatacatgcagctgtgtataaggaatccaaagatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

166

Amino Acids

18.81

Weight (kDa)

8.81

Isoelectric Point (pI)

35.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	61
AccI	GTMKAC	2 cut(s)	273, 465
AclWI	GGATC	1 cut(s)	215
AcsI	RAATTY	1 cut(s)	194
AfaI	GTAC	1 cut(s)	177
AjnI	CCWGG	1 cut(s)	367
AluBI	AGCT	4 cut(s)	155, 267, 403, 475
AluI	AGCT	4 cut(s)	155, 267, 403, 475
AlwI	GGATC	1 cut(s)	215
AlwNI	CAGNNNCTG	1 cut(s)	368
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	4 cut(s)	350, 390, 454, 472
ApoI	RAATTY	1 cut(s)	194
AspS9I	GGNCC	4 cut(s)	4, 135, 374, 425
AsuHPI	GGTGA	2 cut(s)	26, 74
AvaII	GGWCC	3 cut(s)	4, 374, 425
BanI	GGYRCC	1 cut(s)	61
BauI	CACGAG	1 cut(s)	171
BbsI	GAAGAC	1 cut(s)	104
BbvI	GCAGC	4 cut(s)	337, 402, 441, 484
BciT130I	CCWGG	1 cut(s)	369
BciVI	GTATCC	1 cut(s)	299
BfmI	CTRYAG	1 cut(s)	313
BfuI	GTATCC	1 cut(s)	299
BisI	GCNGC	4 cut(s)	351, 391, 455, 473
BlsI	GCNGC	4 cut(s)	352, 392, 456, 474
Bme1390I	CCNGG	1 cut(s)	369
Bme18I	GGWCC	3 cut(s)	4, 374, 425
BmgT120I	GGNCC	4 cut(s)	4, 135, 374, 425
BmiI	GGNNCC	1 cut(s)	63
BmrFI	CCNGG	1 cut(s)	369
BmsI	GCATC	2 cut(s)	240, 405
BpiI	GAAGAC	1 cut(s)	104
BseBI	CCWGG	1 cut(s)	369
BseGI	GGATG	2 cut(s)	31, 420
BseMII	CTCAG	1 cut(s)	122
BseXI	GCAGC	4 cut(s)	337, 402, 441, 484
BseYI	CCCAGC	1 cut(s)	155
BsgI	GTGCAG	1 cut(s)	440
BshFI	GGCC	1 cut(s)	137
BshNI	GGYRCC	1 cut(s)	61
BsmI	GAATGC	1 cut(s)	352
BsnI	GGCC	1 cut(s)	137
Bsp143I	GATC	2 cut(s)	220, 356
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	63
BspPI	GGATC	1 cut(s)	215
BspT107I	GGYRCC	1 cut(s)	61
BssMI	GATC	2 cut(s)	220, 356
BssNAI	GTATAC	1 cut(s)	466
BssSI	CACGAG	1 cut(s)	171
Bst1107I	GTATAC	1 cut(s)	466
Bst2BI	CACGAG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	369
Bst4CI	ACNGT	3 cut(s)	128, 180, 364
BstC8I	GCNNGC	2 cut(s)	265, 388
BstDEI	CTNAG	1 cut(s)	131
BstF5I	GGATG	2 cut(s)	31, 420
BstKTI	GATC	2 cut(s)	223, 359
BstMBI	GATC	2 cut(s)	220, 356
BstNI	CCWGG	1 cut(s)	369
BstNSI	RCATGY	3 cut(s)	96, 390, 472
BstSCI	CCNGG	1 cut(s)	367
BstSFI	CTRYAG	1 cut(s)	313
BstV1I	GCAGC	4 cut(s)	337, 402, 441, 484
BstV2I	GAAGAC	1 cut(s)	104
BstZ17I	GTATAC	1 cut(s)	466
BsuI	GTATCC	1 cut(s)	299
BsuRI	GGCC	1 cut(s)	137
BtsCI	GGATG	2 cut(s)	31, 420
Cac8I	GCNNGC	2 cut(s)	265, 388
CaiI	CAGNNNCTG	1 cut(s)	368
Cfr13I	GGNCC	4 cut(s)	4, 135, 374, 425
Csp6I	GTAC	1 cut(s)	176
CviAII	CATG	3 cut(s)	93, 387, 469
CviJI	RGCY	7 cut(s)	42, 137, 155, 170, 267, 403, 475
CviKI_1	RGCY	7 cut(s)	42, 137, 155, 170, 267, 403, 475
CviQI	GTAC	1 cut(s)	176
DdeI	CTNAG	1 cut(s)	131
DpnI	GATC	2 cut(s)	222, 358
DpnII	GATC	2 cut(s)	220, 356
Eco47I	GGWCC	3 cut(s)	4, 374, 425
EcoRII	CCWGG	1 cut(s)	367
FaeI	CATG	3 cut(s)	96, 390, 472
FaiI	YATR	8 cut(s)	94, 123, 212, 315, 388, 466, 470, 482
FatI	CATG	3 cut(s)	92, 386, 468
FblI	GTMKAC	2 cut(s)	273, 465
Fnu4HI	GCNGC	4 cut(s)	351, 391, 455, 473
FokI	GGATG	2 cut(s)	38, 427
Fsp4HI	GCNGC	4 cut(s)	351, 391, 455, 473
GluI	GCNGC	4 cut(s)	351, 391, 455, 473
GsaI	CCCAGC	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	137
Hin1II	CATG	3 cut(s)	96, 390, 472
HindIII	AAGCTT	1 cut(s)	265
HinfI	GANTC	2 cut(s)	439, 487
HphI	GGTGA	2 cut(s)	26, 74
Hpy166II	GTNNAC	3 cut(s)	176, 274, 466
Hpy188I	TCNGA	3 cut(s)	25, 132, 291
Hpy188III	TCNNGA	3 cut(s)	185, 202, 224
Hpy8I	GTNNAC	3 cut(s)	176, 274, 466
HpyAV	CCTTC	2 cut(s)	11, 296
HpyCH4III	ACNGT	3 cut(s)	128, 180, 364
HpyCH4V	TGCA	4 cut(s)	390, 418, 457, 472
HpyF3I	CTNAG	1 cut(s)	131
Hsp92II	CATG	3 cut(s)	96, 390, 472
Kzo9I	GATC	2 cut(s)	220, 356
LpnPI	CCDG	7 cut(s)	110, 141, 237, 291, 354, 381, 431
Lsp1109I	GCAGC	4 cut(s)	337, 402, 441, 484
LweI	GCATC	2 cut(s)	240, 405
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	2 cut(s)	222, 358
MboI	GATC	2 cut(s)	220, 356
MboII	GAAGA	2 cut(s)	104, 112
MluCI	AATT	1 cut(s)	194
MmeI	TCCRAC	1 cut(s)	314
MnlI	CCTC	2 cut(s)	126, 160
MseI	TTAA	1 cut(s)	105
MslI	CAYNNNNRTG	1 cut(s)	120
MspA1I	CMGCKG	2 cut(s)	155, 475
MspR9I	CCNGG	1 cut(s)	369
Mva1269I	GAATGC	1 cut(s)	352
MvaI	CCWGG	1 cut(s)	369
NdeII	GATC	2 cut(s)	220, 356
NlaIII	CATG	3 cut(s)	96, 390, 472
NlaIV	GGNNCC	1 cut(s)	63
NspI	RCATGY	3 cut(s)	96, 390, 472
PaeI	GCATGC	1 cut(s)	390
PctI	GAATGC	1 cut(s)	352
PfeI	GAWTC	2 cut(s)	439, 487
PkrI	GCNGC	4 cut(s)	352, 392, 456, 474
Psp6I	CCWGG	1 cut(s)	367
PspFI	CCCAGC	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	367
PspN4I	GGNNCC	1 cut(s)	63
PspPI	GGNCC	4 cut(s)	4, 135, 374, 425
PstNI	CAGNNNCTG	1 cut(s)	368
PvuII	CAGCTG	2 cut(s)	155, 475
RsaI	GTAC	1 cut(s)	177
RsaNI	GTAC	1 cut(s)	176
RseI	CAYNNNNRTG	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	4 cut(s)	351, 391, 455, 473
Sau3AI	GATC	2 cut(s)	220, 356
Sau96I	GGNCC	4 cut(s)	4, 135, 374, 425
ScrFI	CCNGG	1 cut(s)	369
SetI	ASST	6 cut(s)	22, 112, 157, 269, 405, 477
SfaNI	GCATC	2 cut(s)	240, 405
SfcI	CTRYAG	1 cut(s)	313
SinI	GGWCC	3 cut(s)	4, 374, 425
SmiMI	CAYNNNNRTG	1 cut(s)	120
SphI	GCATGC	1 cut(s)	390
Sse9I	AATT	1 cut(s)	194
SspI	AATATT	1 cut(s)	335
StyD4I	CCNGG	1 cut(s)	367
TaaI	ACNGT	3 cut(s)	128, 180, 364
TaqI	TCGA	2 cut(s)	146, 359
TasI	AATT	1 cut(s)	194
TatI	WGTACW	1 cut(s)	175
TfiI	GAWTC	2 cut(s)	439, 487
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TseI	GCWGC	4 cut(s)	350, 390, 454, 472
TspDTI	ATGAA	4 cut(s)	42, 104, 272, 431
VpaK11BI	GGWCC	3 cut(s)	4, 374, 425
XapI	RAATTY	1 cut(s)	194
XceI	RCATGY	3 cut(s)	96, 390, 472
XmiI	GTMKAC	2 cut(s)	273, 465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.