FvH4_3g42550

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000473
Physical Location & Seq
Reverse (-)
35500992 .. 35502677
1686 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g42550.t1

Sequence Viewer

Length: 252 bp
ATGGAGGAGTTGGTAATTGTTGGTGCGTTGTTCATAACAGTATATACAAGGATATGGTACGAGAATCGAATGCGAGTAGCTGGACTGCAGGAGCAGAAGGATAAAGATTTCAGAAGACGGGTCGCAATGTCACTAATTTTAGCTAGCGTCAAAAGTTACATTTGGATTTCAGGTAGGAGAAAAGATTCAAACAACACAGACATGGCAACCCATTATAGTGAAACCATGACTCTTTCCAGCATCAATCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.72

Weight (kDa)

9.52

Isoelectric Point (pI)

53.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis pycom01g05790
rosa_chinensis RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 59
AgsI TTSAA 1 cut(s) 189
AluBI AGCT 2 cut(s) 80, 143
AluI AGCT 2 cut(s) 80, 143
Asp700I GAANNNNTTC 1 cut(s) 184
AsuNHI GCTAGC 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 121
BfaI CTAG 1 cut(s) 144
BfmI CTRYAG 1 cut(s) 86
BmtI GCTAGC 1 cut(s) 147
BpiI GAAGAC 1 cut(s) 121
Bse3DI GCAATG 1 cut(s) 132
BseMI GCAATG 1 cut(s) 132
BseRI GAGGAG 1 cut(s) 20
BsmI GAATGC 1 cut(s) 75
BspMAI CTGCAG 1 cut(s) 90
BspOI GCTAGC 1 cut(s) 147
BsrDI GCAATG 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 40
BstC8I GCNNGC 1 cut(s) 145
BstSFI CTRYAG 1 cut(s) 86
BstV2I GAAGAC 1 cut(s) 121
Cac8I GCNNGC 1 cut(s) 145
CseI GACGC 1 cut(s) 136
Csp6I GTAC 1 cut(s) 58
CviAII CATG 2 cut(s) 202, 226
CviJI RGCY 2 cut(s) 80, 143
CviKI_1 RGCY 2 cut(s) 80, 143
CviQI GTAC 1 cut(s) 58
FaeI CATG 2 cut(s) 205, 229
FaiI YATR 8 cut(s) 35, 43, 45, 55, 203, 216, 227, 250
FatI CATG 2 cut(s) 201, 225
FspBI CTAG 1 cut(s) 144
HgaI GACGC 1 cut(s) 136
Hin1II CATG 2 cut(s) 205, 229
HinfI GANTC 3 cut(s) 64, 185, 229
Hpy188I TCNGA 1 cut(s) 113
HpyAV CCTTC 1 cut(s) 91
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4V TGCA 1 cut(s) 88
Hsp92II CATG 2 cut(s) 205, 229
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 3 cut(s) 66, 74, 156
MaeI CTAG 1 cut(s) 144
MaeIII GTNAC 2 cut(s) 129, 155
MboII GAAGA 1 cut(s) 126
MluCI AATT 2 cut(s) 15, 135
MlyI GAGTC 1 cut(s) 223
MroXI GAANNNNTTC 1 cut(s) 184
MslI CAYNNNNRTG 2 cut(s) 200, 216
Mva1269I GAATGC 1 cut(s) 75
NheI GCTAGC 1 cut(s) 143
NlaIII CATG 2 cut(s) 205, 229
NmuCI GTSAC 1 cut(s) 129
PctI GAATGC 1 cut(s) 75
PdmI GAANNNNTTC 1 cut(s) 184
PfeI GAWTC 2 cut(s) 64, 185
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
PstI CTGCAG 1 cut(s) 90
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
RseI CAYNNNNRTG 2 cut(s) 200, 216
SchI GAGTC 1 cut(s) 223
SetI ASST 3 cut(s) 82, 145, 175
SfcI CTRYAG 1 cut(s) 86
SmiMI CAYNNNNRTG 2 cut(s) 200, 216
Sse9I AATT 2 cut(s) 15, 135
SspMI CTAG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 40
TaqI TCGA 1 cut(s) 67
TasI AATT 2 cut(s) 15, 135
TfiI GAWTC 2 cut(s) 64, 185
TseFI GTSAC 1 cut(s) 129
Tsp45I GTSAC 1 cut(s) 129
TspDTI ATGAA 1 cut(s) 22
XmnI GAANNNNTTC 1 cut(s) 184
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.