RchiOBHm_Chr2g0114271

Glutamine amidotransferase domain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
26247688 .. 26249258
1571 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48754

Sequence Viewer

Length: 453 bp
ATGATGATCAGAAGCCATATTTGCCAAAGCACATCTTGTACAGGCAGAAGGAGCAGTGGTGTCGGTTACAGCTGGATTGACGGGTTGAAAGATCATGCAAACAAACAAGTAACAGATTCAATGCTGATGAACGCAAGCTTTGTCTACCCTGAAAACACTCCAACTACAAAAGAAGGATACTACTATAGGACTATCTTTGAGAATATTTTCCAAAGAATGCTGCGAGATCGACAGTTCATGGTGGTCCAAGTGTGGCAAGCAGCACAGCAAAAGCTGTGGAGTGGGATGCAGAATGGTCCAAGAACCCCGATTCATCTGGTCGTGCTGCACTTGGTTGGTATACATGCAGCTGCGTATGAGGAATCCAAAGATGTAAAGACTGGAAGTCTTGTGGGTGACTCTCCACAGAAACTTGTAAAAGGGGTTGCAGAGAAAGTGGCTGCAGTAGTTTGA

Protein Analysis

150

Amino Acids

16.85

Weight (kDa)

9.33

Isoelectric Point (pI)

42.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis pycom01g05790
rosa_chinensis RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 144, 340
AfaI GTAC 1 cut(s) 40
AgsI TTSAA 2 cut(s) 88, 120
AhdI GACNNNNNGTC 1 cut(s) 384
AluBI AGCT 4 cut(s) 72, 138, 274, 350
AluI AGCT 4 cut(s) 72, 138, 274, 350
ApeKI GCWGC 6 cut(s) 220, 260, 325, 347, 350, 440
Asp700I GAANNNNTTC 1 cut(s) 206
AspS9I GGNCC 2 cut(s) 244, 296
AsuHPI GGTGA 1 cut(s) 407
AvaII GGWCC 2 cut(s) 244, 296
BbvI GCAGC 6 cut(s) 207, 272, 312, 337, 359, 427
BcgI CGANNNNNNTGC 2 cut(s) 43, 77
BciVI GTATCC 1 cut(s) 170
BclI TGATCA 1 cut(s) 6
BfmI CTRYAG 2 cut(s) 184, 441
BfuI GTATCC 1 cut(s) 170
BisI GCNGC 6 cut(s) 221, 261, 326, 348, 351, 441
BlsI GCNGC 6 cut(s) 222, 262, 327, 349, 352, 442
Bme18I GGWCC 2 cut(s) 244, 296
BmeRI GACNNNNNGTC 1 cut(s) 384
BmgT120I GGNCC 2 cut(s) 244, 296
BmsI GCATC 1 cut(s) 276
BsaXI ACNNNNNCTCC 2 cut(s) 43, 73
Bse1I ACTGG 1 cut(s) 385
BseGI GGATG 1 cut(s) 291
BseNI ACTGG 1 cut(s) 385
BseXI GCAGC 6 cut(s) 207, 272, 312, 337, 359, 427
BsgI GTGCAG 1 cut(s) 311
BsmI GAATGC 1 cut(s) 222
Bsp1407I TGTACA 1 cut(s) 38
Bsp143I GATC 3 cut(s) 6, 91, 226
BspMAI CTGCAG 1 cut(s) 445
BsrGI TGTACA 1 cut(s) 38
BsrI ACTGG 1 cut(s) 385
BssMI GATC 3 cut(s) 6, 91, 226
BssNAI GTATAC 1 cut(s) 341
Bst1107I GTATAC 1 cut(s) 341
Bst4CI ACNGT 1 cut(s) 234
BstAUI TGTACA 1 cut(s) 38
BstC8I GCNNGC 2 cut(s) 136, 258
BstF5I GGATG 1 cut(s) 291
BstKTI GATC 3 cut(s) 9, 94, 229
BstMBI GATC 3 cut(s) 6, 91, 226
BstMWI GCNNNNNNNGC 2 cut(s) 21, 51
BstNSI RCATGY 1 cut(s) 347
BstSFI CTRYAG 2 cut(s) 184, 441
BstV1I GCAGC 6 cut(s) 207, 272, 312, 337, 359, 427
BstZ17I GTATAC 1 cut(s) 341
BsuI GTATCC 1 cut(s) 170
BtsCI GGATG 1 cut(s) 291
BtsI GCAGTG 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 61
Cac8I GCNNGC 2 cut(s) 136, 258
Cfr13I GGNCC 2 cut(s) 244, 296
Csp6I GTAC 1 cut(s) 39
CspCI CAANNNNNGTGG 2 cut(s) 257, 292
CviAII CATG 3 cut(s) 95, 238, 344
CviJI RGCY 6 cut(s) 15, 72, 138, 274, 350, 440
CviKI_1 RGCY 6 cut(s) 15, 72, 138, 274, 350, 440
CviQI GTAC 1 cut(s) 39
DpnI GATC 3 cut(s) 8, 93, 228
DpnII GATC 3 cut(s) 6, 91, 226
DriI GACNNNNNGTC 1 cut(s) 384
Eam1105I GACNNNNNGTC 1 cut(s) 384
Eco47I GGWCC 2 cut(s) 244, 296
FaeI CATG 3 cut(s) 98, 241, 347
FaiI YATR 7 cut(s) 18, 96, 186, 239, 341, 345, 357
FalI AAGNNNNNCTT 2 cut(s) 19, 51
FatI CATG 3 cut(s) 94, 237, 343
FbaI TGATCA 1 cut(s) 6
FblI GTMKAC 2 cut(s) 144, 340
Fnu4HI GCNGC 6 cut(s) 221, 261, 326, 348, 351, 441
FokI GGATG 1 cut(s) 298
Fsp4HI GCNGC 6 cut(s) 221, 261, 326, 348, 351, 441
GluI GCNGC 6 cut(s) 221, 261, 326, 348, 351, 441
Hin1II CATG 3 cut(s) 98, 241, 347
HindIII AAGCTT 1 cut(s) 136
HinfI GANTC 4 cut(s) 116, 310, 362, 398
HphI GGTGA 1 cut(s) 407
Hpy166II GTNNAC 2 cut(s) 145, 341
Hpy188I TCNGA 1 cut(s) 11
Hpy8I GTNNAC 2 cut(s) 145, 341
HpyAV CCTTC 2 cut(s) 42, 167
HpyCH4III ACNGT 1 cut(s) 234
HpyCH4V TGCA 6 cut(s) 98, 289, 328, 347, 428, 443
HpyF10VI GCNNNNNNNGC 2 cut(s) 21, 51
Hsp92II CATG 3 cut(s) 98, 241, 347
Ksp22I TGATCA 1 cut(s) 6
Kzo9I GATC 3 cut(s) 6, 91, 226
LmnI GCTCC 1 cut(s) 51
LpnPI CCDG 5 cut(s) 27, 58, 162, 302, 366
Lsp1109I GCAGC 6 cut(s) 207, 272, 312, 337, 359, 427
LweI GCATC 1 cut(s) 276
MaeIII GTNAC 3 cut(s) 65, 109, 395
MalI GATC 3 cut(s) 8, 93, 228
MboI GATC 3 cut(s) 6, 91, 226
MlyI GAGTC 1 cut(s) 392
MmeI TCCRAC 1 cut(s) 185
MnlI CCTC 1 cut(s) 352
MroXI GAANNNNTTC 1 cut(s) 206
MspA1I CMGCKG 2 cut(s) 72, 350
Mva1269I GAATGC 1 cut(s) 222
MwoI GCNNNNNNNGC 2 cut(s) 21, 51
NdeII GATC 3 cut(s) 6, 91, 226
NlaIII CATG 3 cut(s) 98, 241, 347
NmuCI GTSAC 1 cut(s) 395
NspI RCATGY 1 cut(s) 347
PctI GAATGC 1 cut(s) 222
PdmI GAANNNNTTC 1 cut(s) 206
PfeI GAWTC 3 cut(s) 116, 310, 362
PkrI GCNGC 6 cut(s) 222, 262, 327, 349, 352, 442
PleI GAGTC 1 cut(s) 392
PpsI GAGTC 1 cut(s) 392
PspPI GGNCC 2 cut(s) 244, 296
PstI CTGCAG 1 cut(s) 445
PvuII CAGCTG 2 cut(s) 72, 350
RsaI GTAC 1 cut(s) 40
RsaNI GTAC 1 cut(s) 39
SatI GCNGC 6 cut(s) 221, 261, 326, 348, 351, 441
Sau3AI GATC 3 cut(s) 6, 91, 226
Sau96I GGNCC 2 cut(s) 244, 296
SchI GAGTC 1 cut(s) 392
SetI ASST 4 cut(s) 74, 140, 276, 352
SfaNI GCATC 1 cut(s) 276
SfcI CTRYAG 2 cut(s) 184, 441
SinI GGWCC 2 cut(s) 244, 296
SspI AATATT 1 cut(s) 205
TaaI ACNGT 1 cut(s) 234
TaqI TCGA 1 cut(s) 229
TatI WGTACW 1 cut(s) 38
TfiI GAWTC 3 cut(s) 116, 310, 362
TscAI CASTG 1 cut(s) 61
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 6 cut(s) 220, 260, 325, 347, 350, 440
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 3 cut(s) 143, 226, 302
TspRI CASTG 1 cut(s) 61
VpaK11BI GGWCC 2 cut(s) 244, 296
XceI RCATGY 1 cut(s) 347
XmiI GTMKAC 2 cut(s) 144, 340
XmnI GAANNNNTTC 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.