Rw5G028430

Glutamine amidotransferase domain

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
43029976 .. 43058132
28157 bp
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UTR
Exon/CDS
Intron
Rw5G028430.1

Sequence Viewer

Length: 273 bp
ATGGAAGGATCAATTTGGTTTGCTTCAGAAATGAAAGCTATAAGTGATGAGTGTGAAAGATTGATATCTTTTCCTCCTGGGCATTTATACTCTAGCAAACAAGGAGGGCTGAAAAGGTGGTACAATCCACAATGGTTTTTGGAGAAGATACCATCGACTCCTTATGATCCCATTGTTTTACACGAGGCTTTTGAGAAGGCCAATGCTCGGATAGGAATGTCTTGTAAGCTCAATGCTAGGATAGGTGAAAACAGAAGAACAAATGGAATGTAA

Protein Analysis

90

Amino Acids

10.33

Weight (kDa)

8.66

Isoelectric Point (pI)

50.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis pycom01g05790
rosa_chinensis RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 16, 161
AcuI CTGAAG 1 cut(s) 9
AfaI GTAC 1 cut(s) 122
AfiI CCNNNNNNNGG 1 cut(s) 207
AjnI CCWGG 1 cut(s) 76
AluBI AGCT 2 cut(s) 38, 229
AluI AGCT 2 cut(s) 38, 229
AlwI GGATC 2 cut(s) 16, 161
AoxI GGCC 1 cut(s) 198
AsuHPI GGTGA 1 cut(s) 257
BauI CACGAG 1 cut(s) 182
BccI CCATC 1 cut(s) 160
BciT130I CCWGG 1 cut(s) 78
BfaI CTAG 2 cut(s) 93, 237
Bme1390I CCNGG 1 cut(s) 78
BmrFI CCNGG 1 cut(s) 78
BsaBI GATNNNNATC 1 cut(s) 64
BsaJI CCNNGG 1 cut(s) 77
Bsc4I CCNNNNNNNGG 1 cut(s) 207
Bse8I GATNNNNATC 1 cut(s) 64
BseBI CCWGG 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 77
BseJI GATNNNNATC 1 cut(s) 64
BseLI CCNNNNNNNGG 1 cut(s) 207
BshFI GGCC 1 cut(s) 200
BslI CCNNNNNNNGG 1 cut(s) 207
BsnI GGCC 1 cut(s) 200
Bsp143I GATC 2 cut(s) 8, 166
BspANI GGCC 1 cut(s) 200
BspPI GGATC 2 cut(s) 16, 161
BssECI CCNNGG 1 cut(s) 77
BssMI GATC 2 cut(s) 8, 166
BssSI CACGAG 1 cut(s) 182
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 1 cut(s) 78
BstKTI GATC 2 cut(s) 11, 169
BstMBI GATC 2 cut(s) 8, 166
BstNI CCWGG 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 76
BsuRI GGCC 1 cut(s) 200
Csp6I GTAC 1 cut(s) 121
CviJI RGCY 5 cut(s) 38, 109, 188, 200, 229
CviKI_1 RGCY 5 cut(s) 38, 109, 188, 200, 229
CviQI GTAC 1 cut(s) 121
DpnI GATC 2 cut(s) 10, 168
DpnII GATC 2 cut(s) 8, 166
Eco32I GATATC 1 cut(s) 66
Eco57I CTGAAG 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 76
EcoRV GATATC 1 cut(s) 66
FaiI YATR 3 cut(s) 41, 88, 165
FspBI CTAG 2 cut(s) 93, 237
HaeIII GGCC 1 cut(s) 200
HinfI GANTC 1 cut(s) 157
HphI GGTGA 1 cut(s) 257
Hpy188I TCNGA 2 cut(s) 28, 210
HpyAV CCTTC 1 cut(s) 190
Kzo9I GATC 2 cut(s) 8, 166
LpnPI CCDG 2 cut(s) 63, 90
MaeI CTAG 2 cut(s) 93, 237
MalI GATC 2 cut(s) 10, 168
MboI GATC 2 cut(s) 8, 166
MboII GAAGA 2 cut(s) 157, 267
MluCI AATT 1 cut(s) 12
MlyI GAGTC 1 cut(s) 151
MnlI CCTC 3 cut(s) 84, 98, 178
MspR9I CCNGG 1 cut(s) 78
MvaI CCWGG 1 cut(s) 78
NdeII GATC 2 cut(s) 8, 166
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
Psp6I CCWGG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 76
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
Sau3AI GATC 2 cut(s) 8, 166
SchI GAGTC 1 cut(s) 151
ScrFI CCNGG 1 cut(s) 78
SetI ASST 4 cut(s) 40, 119, 231, 247
SgeI CNNG 9 cut(s) 89, 90, 105, 113, 194, 196, 219, 234, 249
Sse9I AATT 1 cut(s) 12
SspMI CTAG 2 cut(s) 93, 237
StyD4I CCNGG 1 cut(s) 76
TaqI TCGA 1 cut(s) 155
TasI AATT 1 cut(s) 12
TspDTI ATGAA 1 cut(s) 47
XspI CTAG 2 cut(s) 93, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.