MD15G1324200.v1.1

Asparagine synthetase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
34510015 .. 34515540
5526 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1324200.v1.1.491

Sequence Viewer

Length: 789 bp
ATGTGTGGGATTCTGGCAGTTGAGGAGTGGATTGCACTGCTATTGAAATTGTTATCTTGCTCATCAACGTTTGGCGATTGTGACCCTGCTTCTGGTGATCAGCCGCTTTACAATGAAGACAAGACTGTTATTGTCACTCAATTGAGAGAAAATCTGAAGTCACATCAGTTCCGAACTGGCAGTGACTGTGAAGTGATTGCACATCTTTATGAAGAACATGGAGAGGAGTTTGTAGACATGTTGGACGGCATGTTTTCCTTTGTCCTCCTTGACACAAGAGACCAAAGTTTTATCGCAGCTCGAGATGCAATTGGATCAATTTGGTTTGCTTCAGAAATGAAAGCTTTAAGTGATGATTGCGAAAGATTCATATATTTTCCTCCTGGGCATATTTACTCTAGCAAGCAAGGAGAACTTAGAAGGTGGTACAATCCACCCTGGTTTCTGGAACAGACACCATCGGCTTCTTATGATCCCCTAGTTTTACGTAAGGCTTTTGAGAAGGCTGTGGTTAAGAGACTTATGACAGATGTACCATTCGGTGTTCTTTTGTCTGGAGGACTGGACTCATCACTTGTTGCTGCAGTGGCTAGTCGCTATTTGGCTGATTCAGAAGCTGCATGTCAGTGGGGATCACAGTTGCACACGTTTTGCATTGGCCTGGAGAGCTCGCCAGATTTGAAAGCAGCGAGAGAAGTTGCAGATTATCTTGGGACTCGTCATCATGCGTTTCACTTTACTGTCCAGGTAATTGATGAAGGATGCAAGAATAATTCTACTCAGGCTTAA

Protein Analysis

263

Amino Acids

29.28

Weight (kDa)

4.86

Isoelectric Point (pI)

39.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATase_7 PF13537 27 - 107 1.3e-18 Glutamine amidotransferase domain
GATase_6 PF13522 34 - 107 1.1e-13 Glutamine amidotransferase domain
Asn_synthase PF00733 162 - 249 2.3e-26 Asparagine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis pycom01g05790
rosa_chinensis RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 234
AciI CCGC 1 cut(s) 104
AclI AACGTT 1 cut(s) 68
AclWI GGATC 3 cut(s) 322, 467, 640
AcuI CTGAAG 2 cut(s) 176, 315
AfaI GTAC 2 cut(s) 428, 534
AfiI CCNNNNNNNGG 1 cut(s) 92
AflIII ACRYGT 2 cut(s) 237, 645
AgsI TTSAA 2 cut(s) 46, 682
AjnI CCWGG 4 cut(s) 382, 437, 660, 744
AluBI AGCT 4 cut(s) 299, 344, 617, 669
AluI AGCT 4 cut(s) 299, 344, 617, 669
Alw21I GWGCWC 1 cut(s) 671
Alw26I GTCTC 2 cut(s) 273, 511
AlwI GGATC 3 cut(s) 322, 467, 640
AlwNI CAGNNNCTG 2 cut(s) 186, 617
Ama87I CYCGRG 1 cut(s) 300
AoxI GGCC 1 cut(s) 658
ApeKI GCWGC 4 cut(s) 296, 581, 617, 686
AsuHPI GGTGA 1 cut(s) 107
AvaI CYCGRG 1 cut(s) 300
BaeI ACNNNNGTAYC 2 cut(s) 516, 549
BanII GRGCYC 1 cut(s) 671
BbsI GAAGAC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 671
BbvI GCAGC 4 cut(s) 308, 568, 604, 698
BccI CCATC 1 cut(s) 466
BceAI ACGGC 1 cut(s) 262
BciT130I CCWGG 4 cut(s) 384, 439, 662, 746
BclI TGATCA 1 cut(s) 97
BcoDI GTCTC 2 cut(s) 273, 511
BfaI CTAG 3 cut(s) 399, 479, 591
BfmI CTRYAG 1 cut(s) 582
BisI GCNGC 5 cut(s) 104, 297, 582, 618, 687
BlsI GCNGC 5 cut(s) 105, 298, 583, 619, 688
Bme1390I CCNGG 4 cut(s) 384, 439, 662, 746
BmeT110I CYCGRG 1 cut(s) 300
BmrFI CCNGG 4 cut(s) 384, 439, 662, 746
BmsI GCATC 2 cut(s) 295, 752
BpiI GAAGAC 1 cut(s) 123
BpmI CTGGAG 2 cut(s) 576, 683
BsaAI YACGTR 1 cut(s) 488
BsaI GGTCTC 1 cut(s) 273
BsaJI CCNNGG 2 cut(s) 383, 437
Bsc4I CCNNNNNNNGG 1 cut(s) 92
Bse1I ACTGG 2 cut(s) 181, 567
BseBI CCWGG 4 cut(s) 384, 439, 662, 746
BseDI CCNNGG 2 cut(s) 383, 437
BseGI GGATG 1 cut(s) 767
BseLI CCNNNNNNNGG 1 cut(s) 92
BseNI ACTGG 2 cut(s) 181, 567
BseRI GAGGAG 2 cut(s) 38, 239
BseXI GCAGC 4 cut(s) 308, 568, 604, 698
BshFI GGCC 1 cut(s) 660
BsiHKAI GWGCWC 1 cut(s) 671
BsiHKCI CYCGRG 1 cut(s) 300
BslFI GGGAC 1 cut(s) 727
BslI CCNNNNNNNGG 1 cut(s) 92
BsmAI GTCTC 2 cut(s) 273, 511
BsmFI GGGAC 1 cut(s) 727
BsnI GGCC 1 cut(s) 660
Bso31I GGTCTC 1 cut(s) 273
BsoBI CYCGRG 1 cut(s) 300
Bsp1286I GDGCHC 1 cut(s) 671
Bsp143I GATC 4 cut(s) 97, 314, 472, 632
BspACI CCGC 1 cut(s) 104
BspANI GGCC 1 cut(s) 660
BspMAI CTGCAG 1 cut(s) 586
BspPI GGATC 3 cut(s) 322, 467, 640
BspTNI GGTCTC 1 cut(s) 273
BsrI ACTGG 2 cut(s) 181, 567
BssECI CCNNGG 2 cut(s) 383, 437
BssMI GATC 4 cut(s) 97, 314, 472, 632
Bst2UI CCWGG 4 cut(s) 384, 439, 662, 746
Bst4CI ACNGT 4 cut(s) 127, 188, 639, 742
BstBAI YACGTR 1 cut(s) 488
BstC8I GCNNGC 2 cut(s) 404, 671
BstDEI CTNAG 2 cut(s) 416, 780
BstF5I GGATG 1 cut(s) 767
BstKTI GATC 4 cut(s) 100, 317, 475, 635
BstMAI GTCTC 2 cut(s) 273, 511
BstMBI GATC 4 cut(s) 97, 314, 472, 632
BstMWI GCNNNNNNNGC 3 cut(s) 305, 587, 666
BstNI CCWGG 4 cut(s) 384, 439, 662, 746
BstNSI RCATGY 3 cut(s) 241, 253, 624
BstSCI CCNGG 4 cut(s) 382, 437, 660, 744
BstSFI CTRYAG 1 cut(s) 582
BstSNI TACGTA 1 cut(s) 488
BstV1I GCAGC 4 cut(s) 308, 568, 604, 698
BstV2I GAAGAC 1 cut(s) 123
BsuRI GGCC 1 cut(s) 660
BtsCI GGATG 1 cut(s) 767
BtsI GCAGTG 3 cut(s) 35, 187, 591
BtsIMutI CAGTG 4 cut(s) 35, 187, 591, 632
Cac8I GCNNGC 2 cut(s) 404, 671
CaiI CAGNNNCTG 2 cut(s) 186, 617
Csp6I GTAC 2 cut(s) 427, 533
CviAII CATG 5 cut(s) 218, 238, 250, 621, 725
CviQI GTAC 2 cut(s) 427, 533
DdeI CTNAG 2 cut(s) 416, 780
DpnI GATC 4 cut(s) 99, 316, 474, 634
DpnII GATC 4 cut(s) 97, 314, 472, 632
Ecl136II GAGCTC 1 cut(s) 669
Eco105I TACGTA 1 cut(s) 488
Eco24I GRGCYC 1 cut(s) 671
Eco31I GGTCTC 1 cut(s) 273
Eco53kI GAGCTC 1 cut(s) 669
Eco57I CTGAAG 2 cut(s) 176, 315
Eco88I CYCGRG 1 cut(s) 300
EcoICRI GAGCTC 1 cut(s) 669
EcoRII CCWGG 4 cut(s) 382, 437, 660, 744
EcoT38I GRGCYC 1 cut(s) 671
FaeI CATG 5 cut(s) 221, 241, 253, 624, 728
FalI AAGNNNNNCTT 2 cut(s) 399, 431
FaqI GGGAC 1 cut(s) 727
FatI CATG 5 cut(s) 217, 237, 249, 620, 724
FbaI TGATCA 1 cut(s) 97
FblI GTMKAC 1 cut(s) 234
Fnu4HI GCNGC 5 cut(s) 104, 297, 582, 618, 687
FokI GGATG 1 cut(s) 774
FriOI GRGCYC 1 cut(s) 671
Fsp4HI GCNGC 5 cut(s) 104, 297, 582, 618, 687
FspBI CTAG 3 cut(s) 399, 479, 591
GluI GCNGC 5 cut(s) 104, 297, 582, 618, 687
GsuI CTGGAG 2 cut(s) 576, 683
HaeIII GGCC 1 cut(s) 660
Hin1II CATG 5 cut(s) 221, 241, 253, 624, 728
HindIII AAGCTT 1 cut(s) 342
HinfI GANTC 5 cut(s) 10, 366, 566, 608, 715
HphI GGTGA 1 cut(s) 107
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 4 cut(s) 156, 173, 334, 613
Hpy188III TCNNGA 3 cut(s) 302, 446, 555
Hpy8I GTNNAC 1 cut(s) 235
HpyAV CCTTC 3 cut(s) 414, 496, 752
HpyCH4III ACNGT 4 cut(s) 127, 188, 639, 742
HpyCH4IV ACGT 3 cut(s) 68, 487, 647
HpyCH4V TGCA 9 cut(s) 35, 200, 308, 584, 620, 643, 654, 701, 765
HpyF10VI GCNNNNNNNGC 3 cut(s) 305, 587, 666
HpyF3I CTNAG 2 cut(s) 416, 780
HpySE526I ACGT 3 cut(s) 68, 487, 647
Hsp92II CATG 5 cut(s) 221, 241, 253, 624, 728
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 4 cut(s) 97, 314, 472, 632
Lsp1109I GCAGC 4 cut(s) 308, 568, 604, 698
LweI GCATC 2 cut(s) 295, 752
MaeI CTAG 3 cut(s) 399, 479, 591
MaeII ACGT 3 cut(s) 68, 487, 647
MaeIII GTNAC 4 cut(s) 80, 133, 159, 182
MalI GATC 4 cut(s) 99, 316, 474, 634
MboI GATC 4 cut(s) 97, 314, 472, 632
MboII GAAGA 2 cut(s) 128, 224
MfeI CAATTG 2 cut(s) 140, 309
MhlI GDGCHC 1 cut(s) 671
MluCI AATT 6 cut(s) 47, 140, 309, 318, 750, 772
MlyI GAGTC 2 cut(s) 560, 709
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 5 cut(s) 16, 217, 275, 390, 551
MseI TTAA 3 cut(s) 347, 513, 787
MslI CAYNNNNRTG 2 cut(s) 207, 625
MspR9I CCNGG 4 cut(s) 384, 439, 662, 746
MunI CAATTG 2 cut(s) 140, 309
MvaI CCWGG 4 cut(s) 384, 439, 662, 746
MwoI GCNNNNNNNGC 3 cut(s) 305, 587, 666
NdeII GATC 4 cut(s) 97, 314, 472, 632
NlaIII CATG 5 cut(s) 221, 241, 253, 624, 728
NmuCI GTSAC 4 cut(s) 80, 133, 159, 182
NspI RCATGY 3 cut(s) 241, 253, 624
PaeR7I CTCGAG 1 cut(s) 300
PciI ACATGT 1 cut(s) 237
PfeI GAWTC 3 cut(s) 10, 366, 608
PkrI GCNGC 5 cut(s) 105, 298, 583, 619, 688
PleI GAGTC 2 cut(s) 560, 709
PpsI GAGTC 2 cut(s) 560, 709
Ppu21I YACGTR 1 cut(s) 488
PscI ACATGT 1 cut(s) 237
Psp124BI GAGCTC 1 cut(s) 671
Psp1406I AACGTT 1 cut(s) 68
Psp6I CCWGG 4 cut(s) 382, 437, 660, 744
PspGI CCWGG 4 cut(s) 382, 437, 660, 744
PstI CTGCAG 1 cut(s) 586
PstNI CAGNNNCTG 2 cut(s) 186, 617
RsaI GTAC 2 cut(s) 428, 534
RsaNI GTAC 2 cut(s) 427, 533
RseI CAYNNNNRTG 2 cut(s) 207, 625
SacI GAGCTC 1 cut(s) 671
SaqAI TTAA 3 cut(s) 347, 513, 787
SatI GCNGC 5 cut(s) 104, 297, 582, 618, 687
Sau3AI GATC 4 cut(s) 97, 314, 472, 632
SchI GAGTC 2 cut(s) 560, 709
ScrFI CCNGG 4 cut(s) 384, 439, 662, 746
SduI GDGCHC 1 cut(s) 671
SetI ASST 9 cut(s) 71, 301, 346, 425, 490, 619, 650, 671, 750
SfaNI GCATC 2 cut(s) 295, 752
SfcI CTRYAG 1 cut(s) 582
Sfr274I CTCGAG 1 cut(s) 300
SlaI CTCGAG 1 cut(s) 300
SmiMI CAYNNNNRTG 2 cut(s) 207, 625
SmlI CTYRAG 1 cut(s) 300
SmoI CTYRAG 1 cut(s) 300
SnaBI TACGTA 1 cut(s) 488
Sse9I AATT 6 cut(s) 47, 140, 309, 318, 750, 772
SsiI CCGC 1 cut(s) 104
SspMI CTAG 3 cut(s) 399, 479, 591
SstI GAGCTC 1 cut(s) 671
StyD4I CCNGG 4 cut(s) 382, 437, 660, 744
TaaI ACNGT 4 cut(s) 127, 188, 639, 742
TaiI ACGT 3 cut(s) 71, 490, 650
TaqI TCGA 1 cut(s) 301
TasI AATT 6 cut(s) 47, 140, 309, 318, 750, 772
TauI GCSGC 1 cut(s) 106
TfiI GAWTC 3 cut(s) 10, 366, 608
Tru1I TTAA 3 cut(s) 347, 513, 787
Tru9I TTAA 3 cut(s) 347, 513, 787
TscAI CASTG 4 cut(s) 42, 187, 591, 632
TseFI GTSAC 4 cut(s) 80, 133, 159, 182
TseI GCWGC 4 cut(s) 296, 581, 617, 686
Tsp45I GTSAC 4 cut(s) 80, 133, 159, 182
TspDTI ATGAA 5 cut(s) 129, 225, 353, 358, 771
TspRI CASTG 4 cut(s) 42, 187, 591, 632
XceI RCATGY 3 cut(s) 241, 253, 624
XhoI CTCGAG 1 cut(s) 300
XmiI GTMKAC 1 cut(s) 234
XspI CTAG 3 cut(s) 399, 479, 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.