Rw2G019050

Glutamine amidotransferase domain

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
24966692 .. 24972824
6133 bp
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UTR
Exon/CDS
Intron
Rw2G019050.1

Sequence Viewer

Length: 618 bp
ATGGCGCTTGATACTGGGAGTGACCTTATGAGGAACATGGGGAAGAATTTGTCGACATGCTGGACGGAGCTTGTCCTCCTTGATACAAGAGACAACACCTTCATGGCAGATCGAGACGCTATTGGCATAACCCCACTGTACATGGGCTGGGGTCTTGATGGATCGATTTGGTTTGCTTCAGAAACGAAAGCTATAAGTGATGATTGTGAAAGATTCATATCTTTTCCTCCTGGGTATTTATACTCTAGCAAACAAGGAGGGCTGAGAAGATGGTACAATCCACAATGGTTTTTGGAGAAGATACCATCGAGTCCTTATGATCCCATTGTTTTACACGAGGCTTTTGAGAAGGTTTTCTTAGATTTAGAATTCAGTAATCCCAGACAAAGGCCTGGATGCACAGATGCGCTTGAAGAAGTTATCTACCATTTTGAGACATATGATGTGACCACTATCAGAGCCAGCACTCCAATGTTTCTTATGTCTCGTAAAATTAAATCTCTGGGAGTAAAAATGGTTCTTTCTGGGGAAGGTTCAGATGAAATCTTTGGTGGCTACTTGTATTTCCACAAGGCACCAAACAAGGAGGATTTCACCAAGAAACATGCCAGAAGGTAA

Protein Analysis

205

Amino Acids

23.56

Weight (kDa)

5.61

Isoelectric Point (pI)

44.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3700 PF12481 24 - 103 1.2e-08 Aluminium induced protein
GATase_7 PF13537 24 - 66 6.1e-08 Glutamine amidotransferase domain
Asn_synthase PF00733 133 - 198 1e-18 Asparagine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis pycom01g05790
rosa_chinensis RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 574
AccI GTMKAC 1 cut(s) 53
AclWI GGATC 2 cut(s) 169, 314
AcsI RAATTY 2 cut(s) 46, 368
AcuI CTGAAG 1 cut(s) 162
AfaI GTAC 2 cut(s) 140, 275
AfiI CCNNNNNNNGG 1 cut(s) 387
AgsI TTSAA 1 cut(s) 413
AjnI CCWGG 2 cut(s) 229, 391
AluBI AGCT 2 cut(s) 70, 191
AluI AGCT 2 cut(s) 70, 191
Alw26I GTCTC 4 cut(s) 84, 108, 428, 489
AlwI GGATC 2 cut(s) 169, 314
AoxI GGCC 1 cut(s) 389
ApoI RAATTY 2 cut(s) 46, 368
Asp700I GAANNNNTTC 1 cut(s) 353
AspLEI GCGC 2 cut(s) 7, 409
AsuHPI GGTGA 1 cut(s) 586
BanI GGYRCC 1 cut(s) 574
BauI CACGAG 1 cut(s) 335
BccI CCATC 3 cut(s) 152, 264, 313
BciT130I CCWGG 2 cut(s) 231, 393
BcoDI GTCTC 4 cut(s) 84, 108, 428, 489
BfaI CTAG 1 cut(s) 246
BfoI RGCGCY 1 cut(s) 8
Bme1390I CCNGG 2 cut(s) 231, 393
BmiI GGNNCC 1 cut(s) 576
BmrFI CCNGG 2 cut(s) 231, 393
BmrI ACTGGG 1 cut(s) 24
BmsI GCATC 2 cut(s) 386, 394
BmuI ACTGGG 1 cut(s) 24
Bsa29I ATCGAT 1 cut(s) 164
BsaBI GATNNNNATC 1 cut(s) 217
BsaJI CCNNGG 1 cut(s) 230
Bsc4I CCNNNNNNNGG 1 cut(s) 387
Bse1I ACTGG 1 cut(s) 19
Bse8I GATNNNNATC 1 cut(s) 217
BseBI CCWGG 2 cut(s) 231, 393
BseCI ATCGAT 1 cut(s) 164
BseDI CCNNGG 1 cut(s) 230
BseGI GGATG 1 cut(s) 401
BseJI GATNNNNATC 1 cut(s) 217
BseLI CCNNNNNNNGG 1 cut(s) 387
BseMII CTCAG 1 cut(s) 254
BseNI ACTGG 1 cut(s) 19
BseYI CCCAGC 1 cut(s) 147
BshFI GGCC 1 cut(s) 391
BshNI GGYRCC 1 cut(s) 574
BshVI ATCGAT 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 387
BsmAI GTCTC 4 cut(s) 84, 108, 428, 489
BsmBI CGTCTC 1 cut(s) 108
BsnI GGCC 1 cut(s) 391
Bsp1407I TGTACA 1 cut(s) 138
Bsp143I GATC 3 cut(s) 109, 161, 319
BspANI GGCC 1 cut(s) 391
BspCNI CTCAG 1 cut(s) 255
BspDI ATCGAT 1 cut(s) 164
BspLI GGNNCC 1 cut(s) 576
BspPI GGATC 2 cut(s) 169, 314
BspT107I GGYRCC 1 cut(s) 574
BsrGI TGTACA 1 cut(s) 138
BsrI ACTGG 1 cut(s) 19
BssECI CCNNGG 1 cut(s) 230
BssMI GATC 3 cut(s) 109, 161, 319
BssSI CACGAG 1 cut(s) 335
Bst2BI CACGAG 1 cut(s) 335
Bst2UI CCWGG 2 cut(s) 231, 393
Bst4CI ACNGT 1 cut(s) 138
BstAUI TGTACA 1 cut(s) 138
BstC8I GCNNGC 1 cut(s) 463
BstDEI CTNAG 2 cut(s) 263, 358
BstF5I GGATG 1 cut(s) 401
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 409
BstKTI GATC 3 cut(s) 112, 164, 322
BstMAI GTCTC 4 cut(s) 84, 108, 428, 489
BstMBI GATC 3 cut(s) 109, 161, 319
BstNI CCWGG 2 cut(s) 231, 393
BstNSI RCATGY 2 cut(s) 60, 608
BstSCI CCNGG 2 cut(s) 229, 391
Bsu15I ATCGAT 1 cut(s) 164
BsuRI GGCC 1 cut(s) 391
BsuTUI ATCGAT 1 cut(s) 164
BtsCI GGATG 1 cut(s) 401
BtsIMutI CAGTG 1 cut(s) 134
Cac8I GCNNGC 1 cut(s) 463
CfoI GCGC 2 cut(s) 7, 409
ClaI ATCGAT 1 cut(s) 164
CseI GACGC 1 cut(s) 125
Csp6I GTAC 2 cut(s) 139, 274
CviAII CATG 5 cut(s) 37, 57, 103, 142, 605
CviJI RGCY 8 cut(s) 70, 147, 191, 262, 341, 391, 461, 555
CviKI_1 RGCY 8 cut(s) 70, 147, 191, 262, 341, 391, 461, 555
CviQI GTAC 2 cut(s) 139, 274
DdeI CTNAG 2 cut(s) 263, 358
DpnI GATC 3 cut(s) 111, 163, 321
DpnII GATC 3 cut(s) 109, 161, 319
Eco147I AGGCCT 1 cut(s) 391
Eco57I CTGAAG 1 cut(s) 162
EcoRI GAATTC 1 cut(s) 368
EcoRII CCWGG 2 cut(s) 229, 391
Esp3I CGTCTC 1 cut(s) 108
FaeI CATG 5 cut(s) 40, 60, 106, 145, 608
FalI AAGNNNNNCTT 2 cut(s) 341, 373
FatI CATG 5 cut(s) 36, 56, 102, 141, 604
FauNDI CATATG 1 cut(s) 439
FblI GTMKAC 1 cut(s) 53
FokI GGATG 1 cut(s) 408
FspBI CTAG 1 cut(s) 246
GlaI GCGC 2 cut(s) 6, 408
GsaI CCCAGC 1 cut(s) 151
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 391
HgaI GACGC 1 cut(s) 125
HhaI GCGC 2 cut(s) 7, 409
Hin1II CATG 5 cut(s) 40, 60, 106, 145, 608
Hin6I GCGC 2 cut(s) 5, 407
HinP1I GCGC 2 cut(s) 5, 407
HincII GTYRAC 1 cut(s) 54
HindII GTYRAC 1 cut(s) 54
HinfI GANTC 2 cut(s) 213, 310
HphI GGTGA 1 cut(s) 586
Hpy166II GTNNAC 1 cut(s) 54
Hpy188I TCNGA 3 cut(s) 181, 458, 538
Hpy188III TCNNGA 2 cut(s) 113, 155
Hpy8I GTNNAC 1 cut(s) 54
HpyAV CCTTC 4 cut(s) 109, 343, 524, 606
HpyCH4III ACNGT 1 cut(s) 138
HpyCH4V TGCA 1 cut(s) 399
HpyF3I CTNAG 2 cut(s) 263, 358
Hsp92II CATG 5 cut(s) 40, 60, 106, 145, 608
HspAI GCGC 2 cut(s) 5, 407
Kzo9I GATC 3 cut(s) 109, 161, 319
LmnI GCTCC 1 cut(s) 67
LweI GCATC 2 cut(s) 386, 394
MaeI CTAG 1 cut(s) 246
MaeIII GTNAC 2 cut(s) 20, 445
MalI GATC 3 cut(s) 111, 163, 321
MboI GATC 3 cut(s) 109, 161, 319
MboII GAAGA 4 cut(s) 55, 279, 310, 425
MluCI AATT 3 cut(s) 46, 368, 492
MlyI GAGTC 1 cut(s) 319
MnlI CCTC 6 cut(s) 24, 86, 237, 251, 331, 580
MroXI GAANNNNTTC 1 cut(s) 353
MseI TTAA 1 cut(s) 495
MslI CAYNNNNRTG 2 cut(s) 101, 470
MspR9I CCNGG 2 cut(s) 231, 393
MvaI CCWGG 2 cut(s) 231, 393
NdeI CATATG 1 cut(s) 439
NdeII GATC 3 cut(s) 109, 161, 319
NlaIII CATG 5 cut(s) 40, 60, 106, 145, 608
NlaIV GGNNCC 1 cut(s) 576
NmuCI GTSAC 2 cut(s) 20, 445
NspI RCATGY 2 cut(s) 60, 608
PceI AGGCCT 1 cut(s) 391
PdmI GAANNNNTTC 1 cut(s) 353
PfeI GAWTC 1 cut(s) 213
PleI GAGTC 1 cut(s) 318
PpsI GAGTC 1 cut(s) 318
Psp6I CCWGG 2 cut(s) 229, 391
PspFI CCCAGC 1 cut(s) 147
PspGI CCWGG 2 cut(s) 229, 391
PspN4I GGNNCC 1 cut(s) 576
PsrI GAACNNNNNNTAC 2 cut(s) 501, 533
RsaI GTAC 2 cut(s) 140, 275
RsaNI GTAC 2 cut(s) 139, 274
RseI CAYNNNNRTG 2 cut(s) 101, 470
SalI GTCGAC 1 cut(s) 52
SaqAI TTAA 1 cut(s) 495
Sau3AI GATC 3 cut(s) 109, 161, 319
SchI GAGTC 1 cut(s) 319
ScrFI CCNGG 2 cut(s) 231, 393
SetI ASST 7 cut(s) 27, 72, 101, 193, 354, 535, 617
SfaNI GCATC 2 cut(s) 386, 394
SmiMI CAYNNNNRTG 2 cut(s) 101, 470
Sse9I AATT 3 cut(s) 46, 368, 492
SseBI AGGCCT 1 cut(s) 391
SspMI CTAG 1 cut(s) 246
StuI AGGCCT 1 cut(s) 391
StyD4I CCNGG 2 cut(s) 229, 391
TaaI ACNGT 1 cut(s) 138
TaqI TCGA 4 cut(s) 53, 112, 164, 308
TasI AATT 3 cut(s) 46, 368, 492
TatI WGTACW 1 cut(s) 138
TfiI GAWTC 1 cut(s) 213
Tru1I TTAA 1 cut(s) 495
Tru9I TTAA 1 cut(s) 495
TscAI CASTG 1 cut(s) 141
TseFI GTSAC 2 cut(s) 20, 445
Tsp45I GTSAC 2 cut(s) 20, 445
TspDTI ATGAA 3 cut(s) 91, 205, 555
TspGWI ACGGA 1 cut(s) 80
TspRI CASTG 1 cut(s) 141
XapI RAATTY 2 cut(s) 46, 368
XceI RCATGY 2 cut(s) 60, 608
XmiI GTMKAC 1 cut(s) 53
XmnI GAANNNNTTC 1 cut(s) 353
XspI CTAG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.