Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Forward (+)

26174609 .. 26177891

Gene Structure 3283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48742

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGCCATTTGAAGATTTGAACTTCAGGAAGAGAGGGGGCATTCACATTTTTTCAACCTTTCAAGAGAGACAACTCTCAGGGGCCAAGCGATTGGCTATTGTGGACCCTGCCTCAGGAGATCAGCCGCTCTACAACGAGGACAAGACCGTCATTGTCACGATCGAGTTAGCAAGATCAATTTGGTTTGCTTCAGAAATGAAATGTATAAGTGATAATTGTGAAAGATTCATATCTTTTCCTCCTGGGCATTTATACTCTAGCAAACAAGGAGGGCTGAGAAGGTGGTACAATCCACAATGGTTGTTGGAGAAGATACCATCGACTCCTTATGATCCCATTGTTTTACGTGAGGCTTTTGAGAAGGCTGTGTTAAAGAGACTTATGACAGATGTACCATTCGGTGTTCTTTTGTCTGGAGGGTTGGACTCATCACTCGTTGCTGCTGTGGCTTGTCGTTATTTTACCAAATCAGAAGCTGCACGTCAGTGGGGGTCACAGTTACATACCTTTTGCGTTGGATTGGAGGTCAAGGGAAAGGTTCTTGGTGTCAGTGCTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

186

Amino Acids

20.89

Weight (kDa)

8.91

Isoelectric Point (pI)

52.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asn_synthase	PF00733	115 - 175	4.3e-16	Asparagine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	146
AccBSI	CCGCTC	1 cut(s)	127
AciI	CCGC	1 cut(s)	125
AclWI	GGATC	1 cut(s)	326
AcuI	CTGAAG	2 cut(s)	7, 174
AfaI	GTAC	2 cut(s)	287, 393
AfiI	CCNNNNNNNGG	1 cut(s)	113
AgsI	TTSAA	4 cut(s)	11, 19, 54, 62
AjiI	CACGTC	1 cut(s)	482
AjnI	CCWGG	1 cut(s)	241
AleI	CACNNNNGTG	1 cut(s)	484
AluBI	AGCT	1 cut(s)	476
AluI	AGCT	1 cut(s)	476
Alw21I	GWGCWC	1 cut(s)	556
Alw26I	GTCTC	2 cut(s)	61, 370
AlwI	GGATC	1 cut(s)	326
AlwNI	CAGNNNCTG	1 cut(s)	476
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	2 cut(s)	440, 476
AspS9I	GGNCC	2 cut(s)	81, 103
AvaII	GGWCC	1 cut(s)	103
AxyI	CCTNAGG	1 cut(s)	112
BaeI	ACNNNNGTAYC	2 cut(s)	375, 408
Bbv12I	GWGCWC	1 cut(s)	556
BbvI	GCAGC	2 cut(s)	427, 463
BccI	CCATC	1 cut(s)	325
BciT130I	CCWGG	1 cut(s)	243
BcoDI	GTCTC	2 cut(s)	61, 370
BfaI	CTAG	1 cut(s)	258
BisI	GCNGC	3 cut(s)	125, 441, 477
BlsI	GCNGC	3 cut(s)	126, 442, 478
Bme1390I	CCNGG	1 cut(s)	243
Bme18I	GGWCC	1 cut(s)	103
BmgBI	CACGTC	1 cut(s)	482
BmgT120I	GGNCC	2 cut(s)	81, 103
BmiI	GGNNCC	2 cut(s)	82, 105
BmrFI	CCNGG	1 cut(s)	243
BpmI	CTGGAG	1 cut(s)	435
BsaAI	YACGTR	1 cut(s)	347
BsaBI	GATNNNNATC	1 cut(s)	229
BsaJI	CCNNGG	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
Bse21I	CCTNAGG	1 cut(s)	112
Bse8I	GATNNNNATC	1 cut(s)	229
BseBI	CCWGG	1 cut(s)	243
BseDI	CCNNGG	1 cut(s)	242
BseJI	GATNNNNATC	1 cut(s)	229
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseMII	CTCAG	3 cut(s)	90, 126, 266
BseXI	GCAGC	2 cut(s)	427, 463
BsgI	GTGCAG	1 cut(s)	462
Bsh1285I	CGRYCG	1 cut(s)	162
BshFI	GGCC	1 cut(s)	83
BsiEI	CGRYCG	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	556
BslI	CCNNNNNNNGG	1 cut(s)	113
BsmAI	GTCTC	2 cut(s)	61, 370
BsmI	GAATGC	1 cut(s)	39
BsnI	GGCC	1 cut(s)	83
Bsp1286I	GDGCHC	1 cut(s)	556
Bsp143I	GATC	4 cut(s)	118, 159, 173, 331
BspACI	CCGC	1 cut(s)	125
BspANI	GGCC	1 cut(s)	83
BspCNI	CTCAG	3 cut(s)	89, 125, 267
BspLI	GGNNCC	2 cut(s)	82, 105
BspPI	GGATC	1 cut(s)	326
BsrBI	CCGCTC	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	242
BssMI	GATC	4 cut(s)	118, 159, 173, 331
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	2 cut(s)	148, 498
Bst6I	CTCTTC	1 cut(s)	23
BstBAI	YACGTR	1 cut(s)	347
BstDEI	CTNAG	3 cut(s)	76, 112, 275
BstENI	CCTNNNNNAGG	1 cut(s)	111
BstKTI	GATC	4 cut(s)	121, 162, 176, 334
BstMAI	GTCTC	2 cut(s)	61, 370
BstMBI	GATC	4 cut(s)	118, 159, 173, 331
BstMCI	CGRYCG	1 cut(s)	162
BstMWI	GCNNNNNNNGC	1 cut(s)	446
BstNI	CCWGG	1 cut(s)	243
BstSCI	CCNGG	1 cut(s)	241
BstV1I	GCAGC	2 cut(s)	427, 463
BstXI	CCANNNNNNTGG	1 cut(s)	91
Bsu36I	CCTNAGG	1 cut(s)	112
BsuRI	GGCC	1 cut(s)	83
BtrI	CACGTC	1 cut(s)	482
BtsIMutI	CAGTG	2 cut(s)	491, 556
CaiI	CAGNNNCTG	1 cut(s)	476
Cfr13I	GGNCC	2 cut(s)	81, 103
Csp6I	GTAC	2 cut(s)	286, 392
CspCI	CAANNNNNGTGG	2 cut(s)	282, 317
CviJI	RGCY	8 cut(s)	83, 95, 124, 274, 353, 365, 449, 476
CviKI_1	RGCY	8 cut(s)	83, 95, 124, 274, 353, 365, 449, 476
CviQI	GTAC	2 cut(s)	286, 392
DdeI	CTNAG	3 cut(s)	76, 112, 275
DpnI	GATC	4 cut(s)	120, 161, 175, 333
DpnII	GATC	4 cut(s)	118, 159, 173, 331
DrdI	GACNNNNNNGTC	1 cut(s)	146
DseDI	GACNNNNNNGTC	1 cut(s)	146
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	103
Eco57I	CTGAAG	2 cut(s)	7, 174
Eco81I	CCTNAGG	1 cut(s)	112
EcoNI	CCTNNNNNAGG	1 cut(s)	111
EcoRII	CCWGG	1 cut(s)	241
FaiI	YATR	6 cut(s)	206, 230, 253, 330, 383, 504
Fnu4HI	GCNGC	3 cut(s)	125, 441, 477
Fsp4HI	GCNGC	3 cut(s)	125, 441, 477
FspBI	CTAG	1 cut(s)	258
GluI	GCNGC	3 cut(s)	125, 441, 477
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	1 cut(s)	83
HinfI	GANTC	3 cut(s)	225, 322, 425
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	2 cut(s)	193, 472
Hpy188III	TCNNGA	5 cut(s)	25, 62, 114, 157, 414
Hpy8I	GTNNAC	1 cut(s)	103
HpyAV	CCTTC	2 cut(s)	273, 355
HpyCH4III	ACNGT	2 cut(s)	148, 498
HpyCH4IV	ACGT	2 cut(s)	346, 481
HpyCH4V	TGCA	1 cut(s)	479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	446
HpyF3I	CTNAG	3 cut(s)	76, 112, 275
HpySE526I	ACGT	2 cut(s)	346, 481
Kzo9I	GATC	4 cut(s)	118, 159, 173, 331
LpnPI	CCDG	7 cut(s)	10, 63, 99, 120, 228, 255, 399
Lsp1109I	GCAGC	2 cut(s)	427, 463
MaeI	CTAG	1 cut(s)	258
MaeII	ACGT	2 cut(s)	346, 481
MaeIII	GTNAC	3 cut(s)	154, 492, 498
MalI	GATC	4 cut(s)	120, 161, 175, 333
MbiI	CCGCTC	1 cut(s)	127
MboI	GATC	4 cut(s)	118, 159, 173, 331
MboII	GAAGA	3 cut(s)	23, 40, 322
MhlI	GDGCHC	1 cut(s)	556
MluCI	AATT	2 cut(s)	177, 214
MlyI	GAGTC	2 cut(s)	316, 419
MmeI	TCCRAC	3 cut(s)	285, 402, 496
MnlI	CCTC	8 cut(s)	26, 121, 130, 249, 263, 343, 410, 517
MseI	TTAA	1 cut(s)	371
MslI	CAYNNNNRTG	1 cut(s)	484
MspR9I	CCNGG	1 cut(s)	243
Mva1269I	GAATGC	1 cut(s)	39
MvaI	CCWGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	1 cut(s)	446
NdeII	GATC	4 cut(s)	118, 159, 173, 331
NlaIV	GGNNCC	2 cut(s)	82, 105
NmuCI	GTSAC	2 cut(s)	154, 492
OliI	CACNNNNGTG	1 cut(s)	484
PctI	GAATGC	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	225
PkrI	GCNGC	3 cut(s)	126, 442, 478
Ple19I	CGATCG	1 cut(s)	162
PleI	GAGTC	2 cut(s)	316, 419
PpsI	GAGTC	2 cut(s)	316, 419
Ppu21I	YACGTR	1 cut(s)	347
Psp6I	CCWGG	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	241
PspN4I	GGNNCC	2 cut(s)	82, 105
PspPI	GGNCC	2 cut(s)	81, 103
PstNI	CAGNNNCTG	1 cut(s)	476
PvuI	CGATCG	1 cut(s)	162
RsaI	GTAC	2 cut(s)	287, 393
RsaNI	GTAC	2 cut(s)	286, 392
RseI	CAYNNNNRTG	1 cut(s)	484
SaqAI	TTAA	1 cut(s)	371
SatI	GCNGC	3 cut(s)	125, 441, 477
Sau3AI	GATC	4 cut(s)	118, 159, 173, 331
Sau96I	GGNCC	2 cut(s)	81, 103
SchI	GAGTC	2 cut(s)	316, 419
ScrFI	CCNGG	1 cut(s)	243
SduI	GDGCHC	1 cut(s)	556
SetI	ASST	8 cut(s)	59, 284, 349, 478, 484, 509, 528, 540
SinI	GGWCC	1 cut(s)	103
SmiMI	CAYNNNNRTG	1 cut(s)	484
Sse9I	AATT	2 cut(s)	177, 214
SsiI	CCGC	1 cut(s)	125
SspMI	CTAG	1 cut(s)	258
StyD4I	CCNGG	1 cut(s)	241
TaaI	ACNGT	2 cut(s)	148, 498
TaiI	ACGT	2 cut(s)	349, 484
TaqI	TCGA	2 cut(s)	162, 320
TasI	AATT	2 cut(s)	177, 214
TauI	GCSGC	1 cut(s)	127
TfiI	GAWTC	1 cut(s)	225
Tru1I	TTAA	1 cut(s)	371
Tru9I	TTAA	1 cut(s)	371
TscAI	CASTG	2 cut(s)	491, 556
TseFI	GTSAC	2 cut(s)	154, 492
TseI	GCWGC	2 cut(s)	440, 476
Tsp45I	GTSAC	2 cut(s)	154, 492
TspDTI	ATGAA	2 cut(s)	212, 217
TspRI	CASTG	2 cut(s)	491, 556
VpaK11BI	GGWCC	1 cut(s)	103
XagI	CCTNNNNNAGG	1 cut(s)	111
XspI	CTAG	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.