Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Forward (+)

26435625 .. 26444287

Gene Structure 8663 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG242700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTGTGGAATTCTCGCCGTCTTGGGCTGCGCCGACAACTCTCAGGCCAAGCGGTCTCGCATTATCGAACTCTCGCGCCGATTGCGGCATCGCGGTCCTGATTGGAGCGGGTTGCATTGCCATGGAGATTGTTACCTTGCTCATCAGCGATTGGCTATTGTGGACCCTGCCTCAGGGGATCAGCCGCTCTACAACGAGGACAAGACCGTCATTGTCACGGTTAATGGTGAGATATATAACCACAAGCAGTTGAGAGAAACATTGAAGGGTCATCGATTCCGAACTGGCAGTGACTGTGAAGTGATAGCACATCTTTACGAGGAACATGGGGAAGAATTTGTTGACATGCTAGACGGGATGTTCTCCTTTGTCCTCCTTGATACAAGAGACAACACTTTCATGGCGGCTCGAGATGCTATTGGCATTACCCCACTTTACATGGGAAACAGGAAAGAGGATTGGGATATGGAAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

158

Amino Acids

18.01

Weight (kDa)

5.56

Isoelectric Point (pI)

33.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase_6	PF13522	33 - 149	1.8e-36	Glutamine amidotransferase domain
GATase_7	PF13537	48 - 151	3.2e-39	Glutamine amidotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
AccBSI	CCGCTC	2 cut(s)	108, 187
AccII	CGCG	2 cut(s)	76, 93
AciI	CCGC	6 cut(s)	52, 85, 93, 108, 185, 404
AclWI	GGATC	1 cut(s)	186
AcsI	RAATTY	2 cut(s)	9, 335
AfiI	CCNNNNNNNGG	1 cut(s)	173
AgsI	TTSAA	1 cut(s)	265
Alw26I	GTCTC	2 cut(s)	60, 381
AlwI	GGATC	1 cut(s)	186
AlwNI	CAGNNNCTG	1 cut(s)	294
Ama87I	CYCGRG	1 cut(s)	408
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	1 cut(s)	27
ApoI	RAATTY	2 cut(s)	9, 335
AspLEI	GCGC	2 cut(s)	32, 78
AspS9I	GGNCC	2 cut(s)	95, 163
AsuHPI	GGTGA	1 cut(s)	239
AvaI	CYCGRG	1 cut(s)	408
AvaII	GGWCC	2 cut(s)	95, 163
AxyI	CCTNAGG	1 cut(s)	172
BbvI	GCAGC	1 cut(s)	14
BceAI	ACGGC	1 cut(s)	2
BcoDI	GTCTC	2 cut(s)	60, 381
BfaI	CTAG	1 cut(s)	350
BisI	GCNGC	4 cut(s)	28, 86, 185, 405
BlsI	GCNGC	4 cut(s)	29, 87, 186, 406
Bme18I	GGWCC	2 cut(s)	95, 163
BmeT110I	CYCGRG	1 cut(s)	408
BmgT120I	GGNCC	2 cut(s)	95, 163
BmiI	GGNNCC	1 cut(s)	165
BmsI	GCATC	2 cut(s)	97, 403
Bsa29I	ATCGAT	1 cut(s)	274
BsaI	GGTCTC	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse1I	ACTGG	1 cut(s)	289
Bse21I	CCTNAGG	1 cut(s)	172
Bse3DI	GCAATG	1 cut(s)	115
BseCI	ATCGAT	1 cut(s)	274
BseDI	CCNNGG	1 cut(s)	121
BseGI	GGATG	1 cut(s)	363
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseMI	GCAATG	1 cut(s)	115
BseMII	CTCAG	2 cut(s)	56, 186
BseNI	ACTGG	1 cut(s)	289
BseXI	GCAGC	1 cut(s)	14
Bsh1236I	CGCG	2 cut(s)	76, 93
BshFI	GGCC	1 cut(s)	47
BshVI	ATCGAT	1 cut(s)	274
BsiHKCI	CYCGRG	1 cut(s)	408
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmAI	GTCTC	2 cut(s)	60, 381
BsnI	GGCC	1 cut(s)	47
Bso31I	GGTCTC	1 cut(s)	60
BsoBI	CYCGRG	1 cut(s)	408
Bsp143I	GATC	1 cut(s)	178
Bsp19I	CCATGG	1 cut(s)	121
BspACI	CCGC	6 cut(s)	52, 85, 93, 108, 185, 404
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	2 cut(s)	55, 185
BspDI	ATCGAT	1 cut(s)	274
BspFNI	CGCG	2 cut(s)	76, 93
BspLI	GGNNCC	1 cut(s)	165
BspPI	GGATC	1 cut(s)	186
BspTNI	GGTCTC	1 cut(s)	60
BsrBI	CCGCTC	2 cut(s)	108, 187
BsrDI	GCAATG	1 cut(s)	115
BsrI	ACTGG	1 cut(s)	289
BssECI	CCNNGG	1 cut(s)	121
BssMI	GATC	1 cut(s)	178
BssT1I	CCWWGG	1 cut(s)	121
Bst4CI	ACNGT	3 cut(s)	208, 220, 296
BstDEI	CTNAG	3 cut(s)	42, 172, 474
BstDSI	CCRYGG	1 cut(s)	121
BstENI	CCTNNNNNAGG	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	363
BstFNI	CGCG	2 cut(s)	76, 93
BstHHI	GCGC	2 cut(s)	32, 78
BstKTI	GATC	1 cut(s)	181
BstMAI	GTCTC	2 cut(s)	60, 381
BstMBI	GATC	1 cut(s)	178
BstMWI	GCNNNNNNNGC	2 cut(s)	82, 413
BstNSI	RCATGY	1 cut(s)	349
BstUI	CGCG	2 cut(s)	76, 93
BstV1I	GCAGC	1 cut(s)	14
Bsu15I	ATCGAT	1 cut(s)	274
Bsu36I	CCTNAGG	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	47
BsuTUI	ATCGAT	1 cut(s)	274
BtgI	CCRYGG	1 cut(s)	121
BtgZI	GCGATG	1 cut(s)	74
BtsCI	GGATG	1 cut(s)	363
BtsI	GCAGTG	1 cut(s)	295
BtsIMutI	CAGTG	1 cut(s)	295
CaiI	CAGNNNCTG	1 cut(s)	294
CfoI	GCGC	2 cut(s)	32, 78
Cfr13I	GGNCC	2 cut(s)	95, 163
ClaI	ATCGAT	1 cut(s)	274
CviAII	CATG	5 cut(s)	122, 326, 346, 400, 439
CviJI	RGCY	5 cut(s)	27, 47, 155, 184, 407
CviKI_1	RGCY	5 cut(s)	27, 47, 155, 184, 407
DdeI	CTNAG	3 cut(s)	42, 172, 474
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
Eco130I	CCWWGG	1 cut(s)	121
Eco31I	GGTCTC	1 cut(s)	60
Eco47I	GGWCC	2 cut(s)	95, 163
Eco81I	CCTNAGG	1 cut(s)	172
Eco88I	CYCGRG	1 cut(s)	408
EcoNI	CCTNNNNNAGG	1 cut(s)	171
EcoRI	GAATTC	1 cut(s)	9
EcoT14I	CCWWGG	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	121
FaeI	CATG	5 cut(s)	125, 329, 349, 403, 442
FaiI	YATR	8 cut(s)	123, 235, 237, 327, 347, 401, 440, 467
FatI	CATG	5 cut(s)	121, 325, 345, 399, 438
FauI	CCCGC	1 cut(s)	101
Fnu4HI	GCNGC	4 cut(s)	28, 86, 185, 405
FokI	GGATG	1 cut(s)	370
Fsp4HI	GCNGC	4 cut(s)	28, 86, 185, 405
FspBI	CTAG	1 cut(s)	350
GlaI	GCGC	2 cut(s)	31, 77
GluI	GCNGC	4 cut(s)	28, 86, 185, 405
HaeIII	GGCC	1 cut(s)	47
HhaI	GCGC	2 cut(s)	32, 78
Hin1II	CATG	5 cut(s)	125, 329, 349, 403, 442
Hin6I	GCGC	2 cut(s)	30, 76
HinP1I	GCGC	2 cut(s)	30, 76
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HinfI	GANTC	1 cut(s)	276
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	2 cut(s)	163, 343
Hpy188I	TCNGA	1 cut(s)	281
Hpy188III	TCNNGA	2 cut(s)	98, 410
Hpy8I	GTNNAC	2 cut(s)	163, 343
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	3 cut(s)	208, 220, 296
HpyCH4V	TGCA	1 cut(s)	115
HpyF10VI	GCNNNNNNNGC	2 cut(s)	82, 413
HpyF3I	CTNAG	3 cut(s)	42, 172, 474
Hsp92II	CATG	5 cut(s)	125, 329, 349, 403, 442
HspAI	GCGC	2 cut(s)	30, 76
Kzo9I	GATC	1 cut(s)	178
LmnI	GCTCC	1 cut(s)	105
LpnPI	CCDG	6 cut(s)	29, 111, 159, 180, 270, 433
Lsp1109I	GCAGC	1 cut(s)	14
LweI	GCATC	2 cut(s)	97, 403
MaeI	CTAG	1 cut(s)	350
MaeIII	GTNAC	3 cut(s)	131, 214, 290
MalI	GATC	1 cut(s)	180
MbiI	CCGCTC	2 cut(s)	108, 187
MboI	GATC	1 cut(s)	178
MboII	GAAGA	1 cut(s)	344
MluCI	AATT	2 cut(s)	9, 335
MnlI	CCTC	5 cut(s)	181, 190, 313, 383, 448
MseI	TTAA	1 cut(s)	222
MslI	CAYNNNNRTG	2 cut(s)	120, 398
MvnI	CGCG	2 cut(s)	76, 93
MwoI	GCNNNNNNNGC	2 cut(s)	82, 413
NcoI	CCATGG	1 cut(s)	121
NdeII	GATC	1 cut(s)	178
NlaIII	CATG	5 cut(s)	125, 329, 349, 403, 442
NlaIV	GGNNCC	1 cut(s)	165
NmuCI	GTSAC	2 cut(s)	214, 290
NspI	RCATGY	1 cut(s)	349
PaeR7I	CTCGAG	1 cut(s)	408
PfeI	GAWTC	1 cut(s)	276
PkrI	GCNGC	4 cut(s)	29, 87, 186, 406
PspN4I	GGNNCC	1 cut(s)	165
PspPI	GGNCC	2 cut(s)	95, 163
PstNI	CAGNNNCTG	1 cut(s)	294
RseI	CAYNNNNRTG	2 cut(s)	120, 398
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	4 cut(s)	28, 86, 185, 405
Sau3AI	GATC	1 cut(s)	178
Sau96I	GGNCC	2 cut(s)	95, 163
SetI	ASST	1 cut(s)	138
SfaNI	GCATC	2 cut(s)	97, 403
Sfr274I	CTCGAG	1 cut(s)	408
SinI	GGWCC	2 cut(s)	95, 163
SlaI	CTCGAG	1 cut(s)	408
SmiMI	CAYNNNNRTG	2 cut(s)	120, 398
SmlI	CTYRAG	1 cut(s)	408
SmoI	CTYRAG	1 cut(s)	408
Sse9I	AATT	2 cut(s)	9, 335
SsiI	CCGC	6 cut(s)	52, 85, 93, 108, 185, 404
SspMI	CTAG	1 cut(s)	350
StyI	CCWWGG	1 cut(s)	121
TaaI	ACNGT	3 cut(s)	208, 220, 296
TaqI	TCGA	3 cut(s)	66, 274, 409
TasI	AATT	2 cut(s)	9, 335
TauI	GCSGC	3 cut(s)	88, 187, 407
TfiI	GAWTC	1 cut(s)	276
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	2 cut(s)	214, 290
TseI	GCWGC	1 cut(s)	27
Tsp45I	GTSAC	2 cut(s)	214, 290
TspDTI	ATGAA	1 cut(s)	388
TspRI	CASTG	1 cut(s)	295
VpaK11BI	GGWCC	2 cut(s)	95, 163
XagI	CCTNNNNNAGG	1 cut(s)	171
XapI	RAATTY	2 cut(s)	9, 335
XceI	RCATGY	1 cut(s)	349
XhoI	CTCGAG	1 cut(s)	408
XspI	CTAG	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.