Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000929.1

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Reverse (-)

136712 .. 138938

Gene Structure 2227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000929.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atgtgtggaattctcgccgtcttgggctgcgctgataactctcaggccaagcggtctcgcattatcgaactctcgcgccggttgcggcatcgcggtcctgattggagcgggttgcattgccatggagattgttaccttgctcatcagcgattggctattgtggaccctgcctcaggggatcagccgctctacaacgaggacaagaccgtcattgtcacggttaatggtgagatatataaccacaagcagttgagagaaacattgaagagtcatcgactccgaactggcagtgactgtgaagtgatagcgcacctttacgaggaacatggggaagaatttgttgaaatgctggacgggatgttctcctttgtccttcttgatacaagagacaatactttcatggcggctcgagatgctattggcataaccccactgtacatgggttggggtcttgatggatcaatttggtttgcttcagaaatgaaagctataagtgatgattgtgaaagattcatatcttttcctcctgggcatttatactctagcaaacaaggagggctgagaaggtggtacaatccacaatggtttttggagaagataccatcgactccttatgatcccattgttttacgtgaggcttttgagaaggtatgcattgatgtgcaccacctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

224

Amino Acids

25.61

Weight (kDa)

5.86

Isoelectric Point (pI)

41.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
AccBSI	CCGCTC	2 cut(s)	108, 187
AccII	CGCG	2 cut(s)	76, 93
AciI	CCGC	6 cut(s)	52, 85, 93, 108, 185, 404
AclWI	GGATC	3 cut(s)	186, 466, 611
AcsI	RAATTY	2 cut(s)	9, 335
AcuI	CTGAAG	1 cut(s)	459
AfaI	GTAC	2 cut(s)	437, 572
AfiI	CCNNNNNNNGG	2 cut(s)	173, 319
AgsI	TTSAA	2 cut(s)	265, 344
AjnI	CCWGG	1 cut(s)	526
AloI	GAACNNNNNNTCC	2 cut(s)	344, 376
AluBI	AGCT	1 cut(s)	488
AluI	AGCT	1 cut(s)	488
Alw21I	GWGCWC	1 cut(s)	666
Alw26I	GTCTC	2 cut(s)	60, 381
Alw44I	GTGCAC	1 cut(s)	662
AlwI	GGATC	3 cut(s)	186, 466, 611
AlwNI	CAGNNNCTG	1 cut(s)	294
Ama87I	CYCGRG	1 cut(s)	408
AoxI	GGCC	1 cut(s)	45
ApaLI	GTGCAC	1 cut(s)	662
ApeKI	GCWGC	1 cut(s)	27
ApoI	RAATTY	2 cut(s)	9, 335
AspLEI	GCGC	3 cut(s)	32, 78, 310
AspS9I	GGNCC	2 cut(s)	95, 163
AsuHPI	GGTGA	1 cut(s)	239
AvaI	CYCGRG	1 cut(s)	408
AvaII	GGWCC	2 cut(s)	95, 163
AxyI	CCTNAGG	1 cut(s)	172
BaeGI	GKGCMC	1 cut(s)	666
Bbv12I	GWGCWC	1 cut(s)	666
BbvI	GCAGC	1 cut(s)	14
BccI	CCATC	2 cut(s)	449, 610
BceAI	ACGGC	1 cut(s)	2
BciT130I	CCWGG	1 cut(s)	528
BcoDI	GTCTC	2 cut(s)	60, 381
BfaI	CTAG	1 cut(s)	543
BisI	GCNGC	4 cut(s)	28, 86, 185, 405
BlsI	GCNGC	4 cut(s)	29, 87, 186, 406
Bme1390I	CCNGG	1 cut(s)	528
Bme18I	GGWCC	2 cut(s)	95, 163
BmeT110I	CYCGRG	1 cut(s)	408
BmgT120I	GGNCC	2 cut(s)	95, 163
BmiI	GGNNCC	1 cut(s)	165
BmrFI	CCNGG	1 cut(s)	528
BmsI	GCATC	2 cut(s)	97, 403
BsaAI	YACGTR	1 cut(s)	632
BsaBI	GATNNNNATC	1 cut(s)	514
BsaI	GGTCTC	1 cut(s)	60
BsaJI	CCNNGG	2 cut(s)	121, 527
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 319
Bse118I	RCCGGY	1 cut(s)	78
Bse1I	ACTGG	1 cut(s)	289
Bse21I	CCTNAGG	1 cut(s)	172
Bse3DI	GCAATG	1 cut(s)	115
Bse8I	GATNNNNATC	1 cut(s)	514
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	2 cut(s)	121, 527
BseGI	GGATG	1 cut(s)	363
BseJI	GATNNNNATC	1 cut(s)	514
BseLI	CCNNNNNNNGG	2 cut(s)	173, 319
BseMI	GCAATG	1 cut(s)	115
BseMII	CTCAG	3 cut(s)	56, 186, 551
BseNI	ACTGG	1 cut(s)	289
BseSI	GKGCMC	1 cut(s)	666
BseXI	GCAGC	1 cut(s)	14
Bsh1236I	CGCG	2 cut(s)	76, 93
BshFI	GGCC	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	666
BsiHKCI	CYCGRG	1 cut(s)	408
BsiSI	CCGG	1 cut(s)	79
BslI	CCNNNNNNNGG	2 cut(s)	173, 319
BsmAI	GTCTC	2 cut(s)	60, 381
BsnI	GGCC	1 cut(s)	47
Bso31I	GGTCTC	1 cut(s)	60
BsoBI	CYCGRG	1 cut(s)	408
Bsp1286I	GDGCHC	1 cut(s)	666
Bsp1407I	TGTACA	1 cut(s)	435
Bsp143I	GATC	3 cut(s)	178, 458, 616
Bsp19I	CCATGG	1 cut(s)	121
BspACI	CCGC	6 cut(s)	52, 85, 93, 108, 185, 404
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	3 cut(s)	55, 185, 552
BspFNI	CGCG	2 cut(s)	76, 93
BspLI	GGNNCC	1 cut(s)	165
BspPI	GGATC	3 cut(s)	186, 466, 611
BspTNI	GGTCTC	1 cut(s)	60
BsrBI	CCGCTC	2 cut(s)	108, 187
BsrDI	GCAATG	1 cut(s)	115
BsrFI	RCCGGY	1 cut(s)	78
BsrGI	TGTACA	1 cut(s)	435
BsrI	ACTGG	1 cut(s)	289
BssAI	RCCGGY	1 cut(s)	78
BssECI	CCNNGG	2 cut(s)	121, 527
BssMI	GATC	3 cut(s)	178, 458, 616
BssT1I	CCWWGG	1 cut(s)	121
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	4 cut(s)	208, 220, 296, 435
Bst6I	CTCTTC	1 cut(s)	260
BstAUI	TGTACA	1 cut(s)	435
BstBAI	YACGTR	1 cut(s)	632
BstDEI	CTNAG	3 cut(s)	42, 172, 560
BstDSI	CCRYGG	1 cut(s)	121
BstENI	CCTNNNNNAGG	2 cut(s)	171, 317
BstF5I	GGATG	1 cut(s)	363
BstFNI	CGCG	2 cut(s)	76, 93
BstHHI	GCGC	3 cut(s)	32, 78, 310
BstKTI	GATC	3 cut(s)	181, 461, 619
BstMAI	GTCTC	2 cut(s)	60, 381
BstMBI	GATC	3 cut(s)	178, 458, 616
BstMWI	GCNNNNNNNGC	2 cut(s)	82, 413
BstNI	CCWGG	1 cut(s)	528
BstSCI	CCNGG	1 cut(s)	526
BstSLI	GKGCMC	1 cut(s)	666
BstUI	CGCG	2 cut(s)	76, 93
BstV1I	GCAGC	1 cut(s)	14
Bsu36I	CCTNAGG	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	47
BtgI	CCRYGG	1 cut(s)	121
BtgZI	GCGATG	1 cut(s)	74
BtsCI	GGATG	1 cut(s)	363
BtsI	GCAGTG	1 cut(s)	295
BtsIMutI	CAGTG	2 cut(s)	295, 431
CaiI	CAGNNNCTG	1 cut(s)	294
CfoI	GCGC	3 cut(s)	32, 78, 310
Cfr10I	RCCGGY	1 cut(s)	78
Cfr13I	GGNCC	2 cut(s)	95, 163
Csp6I	GTAC	2 cut(s)	436, 571
CviAII	CATG	4 cut(s)	122, 326, 400, 439
CviJI	RGCY	8 cut(s)	27, 47, 155, 184, 407, 488, 559, 638
CviKI_1	RGCY	8 cut(s)	27, 47, 155, 184, 407, 488, 559, 638
CviQI	GTAC	2 cut(s)	436, 571
DdeI	CTNAG	3 cut(s)	42, 172, 560
DpnI	GATC	3 cut(s)	180, 460, 618
DpnII	GATC	3 cut(s)	178, 458, 616
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
Eco130I	CCWWGG	1 cut(s)	121
Eco31I	GGTCTC	1 cut(s)	60
Eco47I	GGWCC	2 cut(s)	95, 163
Eco57I	CTGAAG	1 cut(s)	459
Eco81I	CCTNAGG	1 cut(s)	172
Eco88I	CYCGRG	1 cut(s)	408
EcoNI	CCTNNNNNAGG	2 cut(s)	171, 317
EcoRI	GAATTC	1 cut(s)	9
EcoRII	CCWGG	1 cut(s)	526
EcoT14I	CCWWGG	1 cut(s)	121
EcoT22I	ATGCAT	1 cut(s)	656
ErhI	CCWWGG	1 cut(s)	121
FaeI	CATG	4 cut(s)	125, 329, 403, 442
FatI	CATG	4 cut(s)	121, 325, 399, 438
FauI	CCCGC	1 cut(s)	101
Fnu4HI	GCNGC	4 cut(s)	28, 86, 185, 405
FokI	GGATG	1 cut(s)	370
Fsp4HI	GCNGC	4 cut(s)	28, 86, 185, 405
FspBI	CTAG	1 cut(s)	543
GlaI	GCGC	3 cut(s)	31, 77, 309
GluI	GCNGC	4 cut(s)	28, 86, 185, 405
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	1 cut(s)	79
HhaI	GCGC	3 cut(s)	32, 78, 310
Hin1II	CATG	4 cut(s)	125, 329, 403, 442
Hin6I	GCGC	3 cut(s)	30, 76, 308
HinP1I	GCGC	3 cut(s)	30, 76, 308
HinfI	GANTC	4 cut(s)	268, 276, 510, 607
HpaII	CCGG	1 cut(s)	79
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	2 cut(s)	163, 664
Hpy188I	TCNGA	2 cut(s)	281, 478
Hpy188III	TCNNGA	4 cut(s)	98, 377, 410, 452
Hpy8I	GTNNAC	2 cut(s)	163, 664
HpyAV	CCTTC	3 cut(s)	383, 558, 640
HpyCH4III	ACNGT	4 cut(s)	208, 220, 296, 435
HpyCH4IV	ACGT	1 cut(s)	631
HpyCH4V	TGCA	3 cut(s)	115, 654, 664
HpyF10VI	GCNNNNNNNGC	2 cut(s)	82, 413
HpyF3I	CTNAG	3 cut(s)	42, 172, 560
HpySE526I	ACGT	1 cut(s)	631
Hsp92II	CATG	4 cut(s)	125, 329, 403, 442
HspAI	GCGC	3 cut(s)	30, 76, 308
Kzo9I	GATC	3 cut(s)	178, 458, 616
LmnI	GCTCC	1 cut(s)	105
LpnPI	CCDG	9 cut(s)	29, 92, 111, 159, 180, 270, 335, 513, 540
Lsp1109I	GCAGC	1 cut(s)	14
LweI	GCATC	2 cut(s)	97, 403
MaeI	CTAG	1 cut(s)	543
MaeII	ACGT	1 cut(s)	631
MaeIII	GTNAC	3 cut(s)	131, 214, 290
MalI	GATC	3 cut(s)	180, 460, 618
MbiI	CCGCTC	2 cut(s)	108, 187
MboI	GATC	3 cut(s)	178, 458, 616
MboII	GAAGA	3 cut(s)	277, 344, 607
MhlI	GDGCHC	1 cut(s)	666
MluCI	AATT	3 cut(s)	9, 335, 462
MlyI	GAGTC	3 cut(s)	270, 277, 601
MnlI	CCTC	6 cut(s)	181, 190, 313, 534, 548, 628
Mph1103I	ATGCAT	1 cut(s)	656
MseI	TTAA	1 cut(s)	222
MslI	CAYNNNNRTG	2 cut(s)	120, 659
MspI	CCGG	1 cut(s)	79
MspR9I	CCNGG	1 cut(s)	528
MvaI	CCWGG	1 cut(s)	528
MvnI	CGCG	2 cut(s)	76, 93
MwoI	GCNNNNNNNGC	2 cut(s)	82, 413
NcoI	CCATGG	1 cut(s)	121
NdeII	GATC	3 cut(s)	178, 458, 616
NlaIII	CATG	4 cut(s)	125, 329, 403, 442
NlaIV	GGNNCC	1 cut(s)	165
NmuCI	GTSAC	2 cut(s)	214, 290
NsiI	ATGCAT	1 cut(s)	656
PaeR7I	CTCGAG	1 cut(s)	408
PfeI	GAWTC	1 cut(s)	510
PkrI	GCNGC	4 cut(s)	29, 87, 186, 406
PleI	GAGTC	3 cut(s)	270, 276, 601
PpsI	GAGTC	3 cut(s)	270, 276, 601
Ppu21I	YACGTR	1 cut(s)	632
Psp6I	CCWGG	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	1 cut(s)	165
PspPI	GGNCC	2 cut(s)	95, 163
PstNI	CAGNNNCTG	1 cut(s)	294
RsaI	GTAC	2 cut(s)	437, 572
RsaNI	GTAC	2 cut(s)	436, 571
RseI	CAYNNNNRTG	2 cut(s)	120, 659
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	4 cut(s)	28, 86, 185, 405
Sau3AI	GATC	3 cut(s)	178, 458, 616
Sau96I	GGNCC	2 cut(s)	95, 163
SchI	GAGTC	3 cut(s)	270, 277, 601
ScrFI	CCNGG	1 cut(s)	528
SduI	GDGCHC	1 cut(s)	666
SetI	ASST	7 cut(s)	138, 315, 490, 569, 634, 651, 672
SfaNI	GCATC	2 cut(s)	97, 403
Sfr274I	CTCGAG	1 cut(s)	408
SinI	GGWCC	2 cut(s)	95, 163
SlaI	CTCGAG	1 cut(s)	408
SmiMI	CAYNNNNRTG	2 cut(s)	120, 659
SmlI	CTYRAG	1 cut(s)	408
SmoI	CTYRAG	1 cut(s)	408
Sse9I	AATT	3 cut(s)	9, 335, 462
SsiI	CCGC	6 cut(s)	52, 85, 93, 108, 185, 404
SspMI	CTAG	1 cut(s)	543
StyD4I	CCNGG	1 cut(s)	526
StyI	CCWWGG	1 cut(s)	121
TaaI	ACNGT	4 cut(s)	208, 220, 296, 435
TaiI	ACGT	1 cut(s)	634
TaqI	TCGA	4 cut(s)	66, 274, 409, 605
TasI	AATT	3 cut(s)	9, 335, 462
TatI	WGTACW	1 cut(s)	435
TauI	GCSGC	3 cut(s)	88, 187, 407
TfiI	GAWTC	1 cut(s)	510
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	2 cut(s)	295, 438
TseFI	GTSAC	2 cut(s)	214, 290
TseI	GCWGC	1 cut(s)	27
Tsp45I	GTSAC	2 cut(s)	214, 290
TspDTI	ATGAA	3 cut(s)	388, 497, 502
TspRI	CASTG	2 cut(s)	295, 438
VneI	GTGCAC	1 cut(s)	662
VpaK11BI	GGWCC	2 cut(s)	95, 163
XagI	CCTNNNNNAGG	2 cut(s)	171, 317
XapI	RAATTY	2 cut(s)	9, 335
XhoI	CTCGAG	1 cut(s)	408
XspI	CTAG	1 cut(s)	543
Zsp2I	ATGCAT	1 cut(s)	656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.