RLG00000018076

Glutamine amidotransferase domain

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
25067564 .. 25071528
3965 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018076

Sequence Viewer

Length: 693 bp
ATGGCGCATTCTCTTAAGCAGTACTTAAAACCATTGCCAAAATCAAATTCAGAAGCAACCTTTGAAGATTTGAACTTCAGGCCGGAAGAGAGGTTGAGGCATCGCGGTCCTGTTTGGAGCGGGTTGCATTGCCATGGGGATTGTTACCTTGCTCATCAGCGAGGACAAGACGGTCATTGTCACGAAACATTGAGAGAAACATTGAAGGGTCATCAATTCCGAACTGGCAGTGACTCTGAAGTGATAGCGCATCTTGAACACGAGGAAGAATTTGTTGACATGCTGGACGGGATGTTCTCCTTTGTCCTCCTTGATATGAGAGACAACACTTTCATGGCGGCTCGAGATGCTATTGGCATAATCCCACTGTACATGGGTTGGGGTCTTCATGGAGGGCTGAGAAGGTGGTACAATCCACAATGGTTTTTGGAGAAGATACCATCGACTCCTTATGATCCCATTGTTTTACGCGAGGCTTTTGAGAAGGCTGTGTTAAAGAGACTTATGACAGATGAACCATTCAGTGTTCTTTTGTCTGGAGGATTGGACTCATCACTCATTGCTGCTGTGGCTTGTCGCTATTTGGCTAAATCAGAAGCTGCACGTCAGTGGGGGTCACAATTACATGCCTTTTGTGTTGGCTTGGAGGGTTCTCCAGATTTGAAAGCAGCAAGAGAAGTTGCAGATTATTGA

Protein Analysis

231

Amino Acids

26.14

Weight (kDa)

5.93

Isoelectric Point (pI)

41.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATase_7 PF13537 61 - 128 4.2e-18 Glutamine amidotransferase domain
GATase_6 PF13522 61 - 128 1.1e-11 Glutamine amidotransferase domain
Asn_synthase PF00733 156 - 230 1.4e-18 Asparagine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis pycom01g05790
rosa_chinensis RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 171
AccBSI CCGCTC 1 cut(s) 120
AccII CGCG 2 cut(s) 105, 471
AciI CCGC 3 cut(s) 105, 120, 338
AclWI GGATC 1 cut(s) 449
AcsI RAATTY 2 cut(s) 46, 269
AcuI CTGAAG 2 cut(s) 61, 258
AfaI GTAC 3 cut(s) 23, 371, 410
AflII CTTAAG 1 cut(s) 14
AgsI TTSAA 5 cut(s) 65, 73, 205, 257, 664
AjiI CACGTC 1 cut(s) 605
AjuI GAANNNNNNNTTGG 2 cut(s) 31, 63
AleI CACNNNNGTG 1 cut(s) 607
AloI GAACNNNNNNTCC 2 cut(s) 278, 310
AluBI AGCT 1 cut(s) 599
AluI AGCT 1 cut(s) 599
Alw26I GTCTC 2 cut(s) 315, 493
AlwI GGATC 1 cut(s) 449
AlwNI CAGNNNCTG 1 cut(s) 599
Ama87I CYCGRG 1 cut(s) 342
AoxI GGCC 1 cut(s) 80
ApeKI GCWGC 3 cut(s) 563, 599, 668
ApoI RAATTY 2 cut(s) 46, 269
AspLEI GCGC 2 cut(s) 7, 250
AspS9I GGNCC 1 cut(s) 107
AvaI CYCGRG 1 cut(s) 342
AvaII GGWCC 1 cut(s) 107
BauI CACGAG 1 cut(s) 260
BbsI GAAGAC 1 cut(s) 377
BbvI GCAGC 3 cut(s) 550, 586, 680
BccI CCATC 1 cut(s) 448
BcoDI GTCTC 2 cut(s) 315, 493
BfrI CTTAAG 1 cut(s) 14
BisI GCNGC 4 cut(s) 339, 564, 600, 669
BlsI GCNGC 4 cut(s) 340, 565, 601, 670
BmcAI AGTACT 1 cut(s) 23
Bme18I GGWCC 1 cut(s) 107
BmeT110I CYCGRG 1 cut(s) 342
BmgBI CACGTC 1 cut(s) 605
BmgT120I GGNCC 1 cut(s) 107
BmsI GCATC 3 cut(s) 109, 259, 337
BpiI GAAGAC 1 cut(s) 377
BpmI CTGGAG 2 cut(s) 558, 639
BsaJI CCNNGG 1 cut(s) 133
Bse1I ACTGG 1 cut(s) 229
Bse3DI GCAATG 3 cut(s) 32, 127, 558
BseDI CCNNGG 1 cut(s) 133
BseGI GGATG 1 cut(s) 297
BseMI GCAATG 3 cut(s) 32, 127, 558
BseMII CTCAG 1 cut(s) 389
BseNI ACTGG 1 cut(s) 229
BseXI GCAGC 3 cut(s) 550, 586, 680
BsgI GTGCAG 1 cut(s) 585
Bsh1236I CGCG 2 cut(s) 105, 471
BshFI GGCC 1 cut(s) 82
BsiHKCI CYCGRG 1 cut(s) 342
BsiSI CCGG 1 cut(s) 83
BsmAI GTCTC 2 cut(s) 315, 493
BsmI GAATGC 1 cut(s) 7
BsnI GGCC 1 cut(s) 82
BsoBI CYCGRG 1 cut(s) 342
Bsp1407I TGTACA 1 cut(s) 369
Bsp143I GATC 1 cut(s) 454
Bsp19I CCATGG 1 cut(s) 133
BspACI CCGC 3 cut(s) 105, 120, 338
BspANI GGCC 1 cut(s) 82
BspCNI CTCAG 1 cut(s) 390
BspFNI CGCG 2 cut(s) 105, 471
BspPI GGATC 1 cut(s) 449
BspTI CTTAAG 1 cut(s) 14
BsrBI CCGCTC 1 cut(s) 120
BsrDI GCAATG 3 cut(s) 32, 127, 558
BsrGI TGTACA 1 cut(s) 369
BsrI ACTGG 1 cut(s) 229
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 1 cut(s) 454
BssSI CACGAG 1 cut(s) 260
BssT1I CCWWGG 1 cut(s) 133
Bst2BI CACGAG 1 cut(s) 260
Bst4CI ACNGT 2 cut(s) 173, 369
Bst6I CTCTTC 1 cut(s) 81
BstAFI CTTAAG 1 cut(s) 14
BstAUI TGTACA 1 cut(s) 369
BstDEI CTNAG 1 cut(s) 398
BstDSI CCRYGG 1 cut(s) 133
BstF5I GGATG 1 cut(s) 297
BstFNI CGCG 2 cut(s) 105, 471
BstHHI GCGC 2 cut(s) 7, 250
BstKTI GATC 1 cut(s) 457
BstMAI GTCTC 2 cut(s) 315, 493
BstMBI GATC 1 cut(s) 454
BstMWI GCNNNNNNNGC 2 cut(s) 347, 569
BstNSI RCATGY 2 cut(s) 283, 629
BstUI CGCG 2 cut(s) 105, 471
BstV1I GCAGC 3 cut(s) 550, 586, 680
BstV2I GAAGAC 1 cut(s) 377
BsuRI GGCC 1 cut(s) 82
BtgI CCRYGG 1 cut(s) 133
BtgZI GCGATG 1 cut(s) 86
BtrI CACGTC 1 cut(s) 605
BtsCI GGATG 1 cut(s) 297
BtsI GCAGTG 1 cut(s) 235
BtsIMutI CAGTG 4 cut(s) 235, 365, 529, 614
CaiI CAGNNNCTG 1 cut(s) 599
CfoI GCGC 2 cut(s) 7, 250
Cfr13I GGNCC 1 cut(s) 107
Csp6I GTAC 3 cut(s) 22, 370, 409
CviAII CATG 6 cut(s) 134, 280, 334, 373, 389, 626
CviJI RGCY 9 cut(s) 82, 341, 397, 476, 488, 572, 587, 599, 642
CviKI_1 RGCY 9 cut(s) 82, 341, 397, 476, 488, 572, 587, 599, 642
CviQI GTAC 3 cut(s) 22, 370, 409
DdeI CTNAG 1 cut(s) 398
DpnI GATC 1 cut(s) 456
DpnII GATC 1 cut(s) 454
DrdI GACNNNNNNGTC 1 cut(s) 171
DseDI GACNNNNNNGTC 1 cut(s) 171
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 133
Eco47I GGWCC 1 cut(s) 107
Eco57I CTGAAG 2 cut(s) 61, 258
Eco88I CYCGRG 1 cut(s) 342
EcoT14I CCWWGG 1 cut(s) 133
ErhI CCWWGG 1 cut(s) 133
FaeI CATG 6 cut(s) 137, 283, 337, 376, 392, 629
FalI AAGNNNNNCTT 2 cut(s) 8, 40
FatI CATG 6 cut(s) 133, 279, 333, 372, 388, 625
FauI CCCGC 1 cut(s) 113
Fnu4HI GCNGC 4 cut(s) 339, 564, 600, 669
FokI GGATG 1 cut(s) 304
Fsp4HI GCNGC 4 cut(s) 339, 564, 600, 669
GlaI GCGC 2 cut(s) 6, 249
GluI GCNGC 4 cut(s) 339, 564, 600, 669
GsuI CTGGAG 2 cut(s) 558, 639
HaeIII GGCC 1 cut(s) 82
HapII CCGG 1 cut(s) 83
HhaI GCGC 2 cut(s) 7, 250
Hin1II CATG 6 cut(s) 137, 283, 337, 376, 392, 629
Hin6I GCGC 2 cut(s) 5, 248
HinP1I GCGC 2 cut(s) 5, 248
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HinfI GANTC 3 cut(s) 233, 445, 548
HpaII CCGG 1 cut(s) 83
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 4 cut(s) 52, 221, 238, 595
Hpy188III TCNNGA 5 cut(s) 182, 254, 344, 537, 656
Hpy8I GTNNAC 1 cut(s) 277
HpyAV CCTTC 3 cut(s) 199, 396, 478
HpyCH4III ACNGT 2 cut(s) 173, 369
HpyCH4IV ACGT 1 cut(s) 604
HpyCH4V TGCA 3 cut(s) 127, 602, 683
HpyF10VI GCNNNNNNNGC 2 cut(s) 347, 569
HpyF3I CTNAG 1 cut(s) 398
HpySE526I ACGT 1 cut(s) 604
Hsp92II CATG 6 cut(s) 137, 283, 337, 376, 392, 629
HspAI GCGC 2 cut(s) 5, 248
Kzo9I GATC 1 cut(s) 454
LmnI GCTCC 1 cut(s) 117
LpnPI CCDG 7 cut(s) 64, 96, 123, 210, 269, 522, 669
Lsp1109I GCAGC 3 cut(s) 550, 586, 680
LweI GCATC 3 cut(s) 109, 259, 337
MaeII ACGT 1 cut(s) 604
MaeIII GTNAC 4 cut(s) 143, 179, 230, 615
MalI GATC 1 cut(s) 456
MbiI CCGCTC 1 cut(s) 120
MboI GATC 1 cut(s) 454
MboII GAAGA 5 cut(s) 77, 98, 278, 377, 445
MluCI AATT 4 cut(s) 46, 215, 269, 620
MlyI GAGTC 3 cut(s) 227, 439, 542
MnlI CCTC 9 cut(s) 84, 90, 155, 256, 317, 386, 466, 533, 640
MseI TTAA 3 cut(s) 15, 26, 494
MslI CAYNNNNRTG 3 cut(s) 132, 332, 607
MspCI CTTAAG 1 cut(s) 14
MspI CCGG 1 cut(s) 83
Mva1269I GAATGC 1 cut(s) 7
MvnI CGCG 2 cut(s) 105, 471
MwoI GCNNNNNNNGC 2 cut(s) 347, 569
NcoI CCATGG 1 cut(s) 133
NdeII GATC 1 cut(s) 454
NlaIII CATG 6 cut(s) 137, 283, 337, 376, 392, 629
NmuCI GTSAC 3 cut(s) 179, 230, 615
NspI RCATGY 2 cut(s) 283, 629
OliI CACNNNNGTG 1 cut(s) 607
PaeR7I CTCGAG 1 cut(s) 342
PctI GAATGC 1 cut(s) 7
PkrI GCNGC 4 cut(s) 340, 565, 601, 670
PleI GAGTC 3 cut(s) 227, 439, 542
PpsI GAGTC 3 cut(s) 227, 439, 542
PspPI GGNCC 1 cut(s) 107
PstNI CAGNNNCTG 1 cut(s) 599
RsaI GTAC 3 cut(s) 23, 371, 410
RsaNI GTAC 3 cut(s) 22, 370, 409
RseI CAYNNNNRTG 3 cut(s) 132, 332, 607
SaqAI TTAA 3 cut(s) 15, 26, 494
SatI GCNGC 4 cut(s) 339, 564, 600, 669
Sau3AI GATC 1 cut(s) 454
Sau96I GGNCC 1 cut(s) 107
ScaI AGTACT 1 cut(s) 23
SchI GAGTC 3 cut(s) 227, 439, 542
SetI ASST 6 cut(s) 62, 95, 150, 407, 601, 607
SfaNI GCATC 3 cut(s) 109, 259, 337
Sfr274I CTCGAG 1 cut(s) 342
SinI GGWCC 1 cut(s) 107
SlaI CTCGAG 1 cut(s) 342
SmiMI CAYNNNNRTG 3 cut(s) 132, 332, 607
SmlI CTYRAG 2 cut(s) 14, 342
SmoI CTYRAG 2 cut(s) 14, 342
Sse9I AATT 4 cut(s) 46, 215, 269, 620
SsiI CCGC 3 cut(s) 105, 120, 338
StyI CCWWGG 1 cut(s) 133
TaaI ACNGT 2 cut(s) 173, 369
TaiI ACGT 1 cut(s) 607
TaqI TCGA 2 cut(s) 343, 443
TasI AATT 4 cut(s) 46, 215, 269, 620
TatI WGTACW 2 cut(s) 21, 369
TauI GCSGC 1 cut(s) 341
Tru1I TTAA 3 cut(s) 15, 26, 494
Tru9I TTAA 3 cut(s) 15, 26, 494
TscAI CASTG 4 cut(s) 235, 372, 529, 614
TseFI GTSAC 3 cut(s) 179, 230, 615
TseI GCWGC 3 cut(s) 563, 599, 668
Tsp45I GTSAC 3 cut(s) 179, 230, 615
TspDTI ATGAA 3 cut(s) 322, 377, 528
TspRI CASTG 4 cut(s) 235, 372, 529, 614
Vha464I CTTAAG 1 cut(s) 14
VpaK11BI GGWCC 1 cut(s) 107
XapI RAATTY 2 cut(s) 46, 269
XceI RCATGY 2 cut(s) 283, 629
XhoI CTCGAG 1 cut(s) 342
ZrmI AGTACT 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.