Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Forward (+)

66198708 .. 66207173

Gene Structure 8466 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00130070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGAAAGCTTTAAGTGATGATTGTGAAAGATTCATATCTTTTCCTCCTGGGCATTTATACTCTAGCAAACAAGGAGGGCTGAGAAGATGGTACAATCCACAATGGTTTTTGAAGAAGATACCATCGATTCCTTATGATCCCATTGTTTTACGCGAGGCTTTTGAGAAGGCTGTGTTAAGGAGACTTATGACAGATGTACCATTTGGTGTTCTTTTGTCCGGAGGGTTGGACTCATCACTTGTTGCTGCTGTGGCTTGTCGCTATTTGGCTAAATCCGAAGCTGCAAGTCAGTGGGGGTCACAGTTACATACCTTTTGCATTGGCTTGGAGTCTTCAAGGTTCTCCAGATTTGAAAGCAGCAAGAGAAGTTCCAGATTATCTTGGAACTCATCATCACGAGTTTCACTGTACTGTTCATGTAATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

142

Amino Acids

16.04

Weight (kDa)

9.54

Isoelectric Point (pI)

73.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asn_synthase	PF00733	50 - 115	2.4e-17	Asparagine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	153
AccIII	TCCGGA	1 cut(s)	218
AclWI	GGATC	1 cut(s)	131
AfaI	GTAC	3 cut(s)	92, 198, 410
AgsI	TTSAA	3 cut(s)	112, 336, 353
AjnI	CCWGG	1 cut(s)	46
AluBI	AGCT	2 cut(s)	8, 281
AluI	AGCT	2 cut(s)	8, 281
Alw26I	GTCTC	1 cut(s)	175
AlwI	GGATC	1 cut(s)	131
Aor13HI	TCCGGA	1 cut(s)	218
ApeKI	GCWGC	3 cut(s)	245, 281, 357
BaeI	ACNNNNGTAYC	2 cut(s)	180, 213
BauI	CACGAG	1 cut(s)	396
BbsI	GAAGAC	1 cut(s)	324
BbvI	GCAGC	3 cut(s)	232, 268, 369
BccI	CCATC	2 cut(s)	81, 130
BciT130I	CCWGG	1 cut(s)	48
BcoDI	GTCTC	1 cut(s)	175
BfaI	CTAG	1 cut(s)	63
BisI	GCNGC	3 cut(s)	246, 282, 358
BlsI	GCNGC	3 cut(s)	247, 283, 359
Bme1390I	CCNGG	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	48
BpiI	GAAGAC	1 cut(s)	324
BpmI	CTGGAG	1 cut(s)	328
Bsa29I	ATCGAT	1 cut(s)	125
BsaBI	GATNNNNATC	1 cut(s)	34
BsaJI	CCNNGG	1 cut(s)	47
BsaWI	WCCGGW	1 cut(s)	218
Bse8I	GATNNNNATC	1 cut(s)	34
BseAI	TCCGGA	1 cut(s)	218
BseBI	CCWGG	1 cut(s)	48
BseCI	ATCGAT	1 cut(s)	125
BseDI	CCNNGG	1 cut(s)	47
BseJI	GATNNNNATC	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	71
BseXI	GCAGC	3 cut(s)	232, 268, 369
Bsh1236I	CGCG	1 cut(s)	153
BshVI	ATCGAT	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	219
BsmAI	GTCTC	1 cut(s)	175
Bsp13I	TCCGGA	1 cut(s)	218
Bsp143I	GATC	1 cut(s)	136
BspCNI	CTCAG	1 cut(s)	72
BspDI	ATCGAT	1 cut(s)	125
BspEI	TCCGGA	1 cut(s)	218
BspFNI	CGCG	1 cut(s)	153
BspPI	GGATC	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	1 cut(s)	136
BssSI	CACGAG	1 cut(s)	396
Bst2BI	CACGAG	1 cut(s)	396
Bst2UI	CCWGG	1 cut(s)	48
Bst4CI	ACNGT	3 cut(s)	303, 408, 413
BstDEI	CTNAG	1 cut(s)	80
BstFNI	CGCG	1 cut(s)	153
BstKTI	GATC	1 cut(s)	139
BstMAI	GTCTC	1 cut(s)	175
BstMBI	GATC	1 cut(s)	136
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BstNI	CCWGG	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	46
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	3 cut(s)	232, 268, 369
BstV2I	GAAGAC	1 cut(s)	324
Bsu15I	ATCGAT	1 cut(s)	125
BsuTUI	ATCGAT	1 cut(s)	125
BtsIMutI	CAGTG	2 cut(s)	296, 404
ClaI	ATCGAT	1 cut(s)	125
Csp6I	GTAC	3 cut(s)	91, 197, 409
CviAII	CATG	1 cut(s)	417
CviJI	RGCY	8 cut(s)	8, 79, 158, 170, 254, 269, 281, 324
CviKI_1	RGCY	8 cut(s)	8, 79, 158, 170, 254, 269, 281, 324
CviQI	GTAC	3 cut(s)	91, 197, 409
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	46
FaeI	CATG	1 cut(s)	420
FaiI	YATR	8 cut(s)	35, 58, 135, 188, 309, 418, 425, 427
FatI	CATG	1 cut(s)	416
Fnu4HI	GCNGC	3 cut(s)	246, 282, 358
Fsp4HI	GCNGC	3 cut(s)	246, 282, 358
FspBI	CTAG	1 cut(s)	63
GluI	GCNGC	3 cut(s)	246, 282, 358
GsuI	CTGGAG	1 cut(s)	328
HapII	CCGG	1 cut(s)	219
Hin1II	CATG	1 cut(s)	420
HindIII	AAGCTT	1 cut(s)	6
HinfI	GANTC	4 cut(s)	30, 127, 230, 329
HpaII	CCGG	1 cut(s)	219
Hpy188I	TCNGA	1 cut(s)	277
Hpy188III	TCNNGA	4 cut(s)	219, 345, 372, 396
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	3 cut(s)	303, 408, 413
HpyCH4V	TGCA	2 cut(s)	284, 318
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
HpyF3I	CTNAG	1 cut(s)	80
Hsp92II	CATG	1 cut(s)	420
Kpn2I	TCCGGA	1 cut(s)	218
Kzo9I	GATC	1 cut(s)	136
LpnPI	CCDG	5 cut(s)	33, 60, 232, 358, 385
Lsp1109I	GCAGC	3 cut(s)	232, 268, 369
MaeI	CTAG	1 cut(s)	63
MaeIII	GTNAC	2 cut(s)	297, 303
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MboII	GAAGA	4 cut(s)	96, 124, 127, 324
MlyI	GAGTC	2 cut(s)	224, 338
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	4 cut(s)	54, 68, 148, 215
MroI	TCCGGA	1 cut(s)	218
MseI	TTAA	2 cut(s)	11, 176
MspI	CCGG	1 cut(s)	219
MspR9I	CCNGG	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	48
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	1 cut(s)	251
NdeII	GATC	1 cut(s)	136
NlaIII	CATG	1 cut(s)	420
NmuCI	GTSAC	1 cut(s)	297
PfeI	GAWTC	2 cut(s)	30, 127
PkrI	GCNGC	3 cut(s)	247, 283, 359
PleI	GAGTC	2 cut(s)	224, 337
PpsI	GAGTC	2 cut(s)	224, 337
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
RsaI	GTAC	3 cut(s)	92, 198, 410
RsaNI	GTAC	3 cut(s)	91, 197, 409
SaqAI	TTAA	2 cut(s)	11, 176
SatI	GCNGC	3 cut(s)	246, 282, 358
Sau3AI	GATC	1 cut(s)	136
SchI	GAGTC	2 cut(s)	224, 338
ScrFI	CCNGG	1 cut(s)	48
SetI	ASST	4 cut(s)	10, 283, 314, 341
SspMI	CTAG	1 cut(s)	63
StyD4I	CCNGG	1 cut(s)	46
TaaI	ACNGT	3 cut(s)	303, 408, 413
TaqI	TCGA	1 cut(s)	125
TatI	WGTACW	1 cut(s)	408
TfiI	GAWTC	2 cut(s)	30, 127
Tru1I	TTAA	2 cut(s)	11, 176
Tru9I	TTAA	2 cut(s)	11, 176
TscAI	CASTG	2 cut(s)	296, 411
TseFI	GTSAC	1 cut(s)	297
TseI	GCWGC	3 cut(s)	245, 281, 357
Tsp45I	GTSAC	1 cut(s)	297
TspDTI	ATGAA	3 cut(s)	17, 22, 405
TspRI	CASTG	2 cut(s)	296, 411
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.