RLG00000018094

Glutamine amidotransferase domain

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
25259675 .. 25262650
2976 bp
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UTR
Exon/CDS
Intron
RLM00000018094

Sequence Viewer

Length: 537 bp
ATGCTGGACGGGATGTTCTCCTTTGTCCTTCTTGATACAAGAGACAATACTTTCATGGCGGCTCGAGATGCTATTGGCATAACCCCACTATACATGGGTTGGGGTCTCGATGAAATGAAAGCGATAAGTGATGATTGTGAAAGATTCATATCTTTTCCTCCTGGGCATCTGTACTCTAGCAAACAAGGAGGGCTGAGAAGGTGGTACAATCCAGAATGGTTTTTGGAGAAGATACCATCATCTCCTTATGATCCCATTGTTTTACGCGAGGCTTTTGAGAAGGCTGTGTTAAAGAGACTTATGACAGATGTACCATTCGGTGTTCTTTTGTCCGGAGGATTGGACTCGTCACTTGTTGCTGCTGTGGCTTGTCGCTATTTGGCTAAATCAGAAGCTGCACCAAGAGAAGTTGCTGATTATCTTGGAACTCATCATCACGAGTTTCACTTTACTGTTCAGAATTCAGGTTTGCTTGAAATAGGATTCGGAATAGTCATATTAATTGGTGATTGGGAATACAAATTGCGTTTACCCTGA

Protein Analysis

179

Amino Acids

20.08

Weight (kDa)

5.32

Isoelectric Point (pI)

42.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATase_7 PF13537 2 - 35 5.3e-09 Glutamine amidotransferase domain
DUF3700 PF12481 2 - 80 3.1e-08 Aluminium induced protein
Asn_synthase PF00733 88 - 153 9.2e-14 Asparagine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis pycom01g05790
rosa_chinensis RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 267
AccIII TCCGGA 1 cut(s) 332
AciI CCGC 1 cut(s) 59
AclWI GGATC 1 cut(s) 245
AcsI RAATTY 1 cut(s) 460
AfaI GTAC 3 cut(s) 173, 206, 312
AgsI TTSAA 1 cut(s) 476
AjnI CCWGG 1 cut(s) 160
AloI GAACNNNNNNTCC 1 cut(s) 31
AluBI AGCT 1 cut(s) 395
AluI AGCT 1 cut(s) 395
Alw26I GTCTC 3 cut(s) 36, 110, 289
AlwI GGATC 1 cut(s) 245
AlwNI CAGNNNCTG 1 cut(s) 395
Ama87I CYCGRG 1 cut(s) 63
Aor13HI TCCGGA 1 cut(s) 332
ApeKI GCWGC 2 cut(s) 359, 395
ApoI RAATTY 1 cut(s) 460
AseI ATTAAT 1 cut(s) 500
AsuHPI GGTGA 1 cut(s) 518
AvaI CYCGRG 1 cut(s) 63
BaeI ACNNNNGTAYC 2 cut(s) 294, 327
BauI CACGAG 1 cut(s) 437
BbvI GCAGC 2 cut(s) 346, 382
BccI CCATC 1 cut(s) 244
BciT130I CCWGG 1 cut(s) 162
BcoDI GTCTC 3 cut(s) 36, 110, 289
BfaI CTAG 1 cut(s) 177
BisI GCNGC 3 cut(s) 60, 360, 396
BlsI GCNGC 3 cut(s) 61, 361, 397
Bme1390I CCNGG 1 cut(s) 162
BmeT110I CYCGRG 1 cut(s) 63
BmrFI CCNGG 1 cut(s) 162
BmsI GCATC 2 cut(s) 58, 175
BsaBI GATNNNNATC 1 cut(s) 148
BsaI GGTCTC 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 161
BsaWI WCCGGW 1 cut(s) 332
Bse8I GATNNNNATC 1 cut(s) 148
BseAI TCCGGA 1 cut(s) 332
BseBI CCWGG 1 cut(s) 162
BseDI CCNNGG 1 cut(s) 161
BseGI GGATG 1 cut(s) 18
BseJI GATNNNNATC 1 cut(s) 148
BseMII CTCAG 1 cut(s) 185
BseXI GCAGC 2 cut(s) 346, 382
BsgI GTGCAG 1 cut(s) 381
Bsh1236I CGCG 1 cut(s) 267
BsiHKCI CYCGRG 1 cut(s) 63
BsiSI CCGG 1 cut(s) 333
BsmAI GTCTC 3 cut(s) 36, 110, 289
Bso31I GGTCTC 1 cut(s) 110
BsoBI CYCGRG 1 cut(s) 63
Bsp13I TCCGGA 1 cut(s) 332
Bsp143I GATC 1 cut(s) 250
BspACI CCGC 1 cut(s) 59
BspCNI CTCAG 1 cut(s) 186
BspEI TCCGGA 1 cut(s) 332
BspFNI CGCG 1 cut(s) 267
BspPI GGATC 1 cut(s) 245
BspTNI GGTCTC 1 cut(s) 110
BssECI CCNNGG 1 cut(s) 161
BssMI GATC 1 cut(s) 250
BssSI CACGAG 1 cut(s) 437
Bst2BI CACGAG 1 cut(s) 437
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 454
BstDEI CTNAG 1 cut(s) 194
BstF5I GGATG 1 cut(s) 18
BstFNI CGCG 1 cut(s) 267
BstKTI GATC 1 cut(s) 253
BstMAI GTCTC 3 cut(s) 36, 110, 289
BstMBI GATC 1 cut(s) 250
BstMWI GCNNNNNNNGC 2 cut(s) 68, 365
BstNI CCWGG 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 160
BstUI CGCG 1 cut(s) 267
BstV1I GCAGC 2 cut(s) 346, 382
BtsCI GGATG 1 cut(s) 18
CaiI CAGNNNCTG 1 cut(s) 395
Csp6I GTAC 3 cut(s) 172, 205, 311
CviAII CATG 2 cut(s) 55, 94
CviJI RGCY 7 cut(s) 62, 193, 272, 284, 368, 383, 395
CviKI_1 RGCY 7 cut(s) 62, 193, 272, 284, 368, 383, 395
CviQI GTAC 3 cut(s) 172, 205, 311
DdeI CTNAG 1 cut(s) 194
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
Eco31I GGTCTC 1 cut(s) 110
Eco88I CYCGRG 1 cut(s) 63
EcoRI GAATTC 1 cut(s) 460
EcoRII CCWGG 1 cut(s) 160
FaeI CATG 2 cut(s) 58, 97
FaiI YATR 8 cut(s) 56, 80, 91, 95, 149, 249, 302, 497
FatI CATG 2 cut(s) 54, 93
Fnu4HI GCNGC 3 cut(s) 60, 360, 396
FokI GGATG 1 cut(s) 25
Fsp4HI GCNGC 3 cut(s) 60, 360, 396
FspBI CTAG 1 cut(s) 177
GluI GCNGC 3 cut(s) 60, 360, 396
HapII CCGG 1 cut(s) 333
Hin1II CATG 2 cut(s) 58, 97
HinfI GANTC 3 cut(s) 144, 344, 483
HpaII CCGG 1 cut(s) 333
HphI GGTGA 1 cut(s) 518
Hpy166II GTNNAC 1 cut(s) 530
Hpy188I TCNGA 3 cut(s) 391, 459, 488
Hpy188III TCNNGA 6 cut(s) 32, 65, 107, 212, 333, 437
Hpy8I GTNNAC 1 cut(s) 530
HpyAV CCTTC 3 cut(s) 38, 192, 274
HpyCH4III ACNGT 1 cut(s) 454
HpyCH4V TGCA 1 cut(s) 398
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 365
HpyF3I CTNAG 1 cut(s) 194
Hsp92II CATG 2 cut(s) 58, 97
Kpn2I TCCGGA 1 cut(s) 332
Kzo9I GATC 1 cut(s) 250
LpnPI CCDG 5 cut(s) 147, 174, 225, 346, 450
Lsp1109I GCAGC 2 cut(s) 346, 382
LweI GCATC 2 cut(s) 58, 175
MaeI CTAG 1 cut(s) 177
MaeIII GTNAC 1 cut(s) 348
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 1 cut(s) 241
MluCI AATT 3 cut(s) 460, 501, 521
MlyI GAGTC 1 cut(s) 338
MnlI CCTC 4 cut(s) 168, 182, 262, 329
MroI TCCGGA 1 cut(s) 332
MseI TTAA 2 cut(s) 290, 500
MspI CCGG 1 cut(s) 333
MspR9I CCNGG 1 cut(s) 162
MvaI CCWGG 1 cut(s) 162
MvnI CGCG 1 cut(s) 267
MwoI GCNNNNNNNGC 2 cut(s) 68, 365
NdeII GATC 1 cut(s) 250
NlaIII CATG 2 cut(s) 58, 97
NmuCI GTSAC 1 cut(s) 348
PaeR7I CTCGAG 1 cut(s) 63
PfeI GAWTC 2 cut(s) 144, 483
PkrI GCNGC 3 cut(s) 61, 361, 397
PleI GAGTC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 338
PshBI ATTAAT 1 cut(s) 500
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PstNI CAGNNNCTG 1 cut(s) 395
RsaI GTAC 3 cut(s) 173, 206, 312
RsaNI GTAC 3 cut(s) 172, 205, 311
SaqAI TTAA 2 cut(s) 290, 500
SatI GCNGC 3 cut(s) 60, 360, 396
Sau3AI GATC 1 cut(s) 250
SchI GAGTC 1 cut(s) 338
ScrFI CCNGG 1 cut(s) 162
SetI ASST 3 cut(s) 203, 397, 469
SfaNI GCATC 2 cut(s) 58, 175
Sfr274I CTCGAG 1 cut(s) 63
SlaI CTCGAG 1 cut(s) 63
SmlI CTYRAG 1 cut(s) 63
SmoI CTYRAG 1 cut(s) 63
Sse9I AATT 3 cut(s) 460, 501, 521
SsiI CCGC 1 cut(s) 59
SspMI CTAG 1 cut(s) 177
StyD4I CCNGG 1 cut(s) 160
TaaI ACNGT 1 cut(s) 454
TaqI TCGA 2 cut(s) 64, 108
TasI AATT 3 cut(s) 460, 501, 521
TatI WGTACW 1 cut(s) 171
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 2 cut(s) 144, 483
Tru1I TTAA 2 cut(s) 290, 500
Tru9I TTAA 2 cut(s) 290, 500
TseFI GTSAC 1 cut(s) 348
TseI GCWGC 2 cut(s) 359, 395
Tsp45I GTSAC 1 cut(s) 348
TspDTI ATGAA 4 cut(s) 43, 126, 131, 136
VspI ATTAAT 1 cut(s) 500
XapI RAATTY 1 cut(s) 460
XhoI CTCGAG 1 cut(s) 63
XspI CTAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.