Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Forward (+)

26023161 .. 26023918

Gene Structure 758 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48724

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGACAGATGTACCATTCGGTGTTCTTTTGTCCAGAGGATTGGACTCATCACTCGTTGATGCTGTGGCTGGTCGCTATTTGGCTAAATCAGAAGCTGCATGTCAGTGGGGGTCACAATTACATACCTTTTGCGTTGGCTTGGAGGGTTCACCAGATTTAAAAGCAGCAAGAGAAGTTGCTGATTATCTTGGAACTCATCATCACGAGTTTCACTTTACTATTCAGGTAATTTATAAGGGATGTGAGAAGAATACTTTTACTAAGGCTCAGGGTGGAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

93

Amino Acids

10.1

Weight (kDa)

6.16

Isoelectric Point (pI)

21.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asn_synthase	PF00733	1 - 75	5.6e-19	Asparagine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	234
AfaI	GTAC	1 cut(s)	12
AluBI	AGCT	1 cut(s)	95
AluI	AGCT	1 cut(s)	95
AlwNI	CAGNNNCTG	1 cut(s)	95
ApeKI	GCWGC	2 cut(s)	95, 164
AsuHPI	GGTGA	1 cut(s)	141
BaeI	ACNNNNGTAYC	1 cut(s)	27
BauI	CACGAG	1 cut(s)	203
BbvI	GCAGC	2 cut(s)	82, 176
BisI	GCNGC	2 cut(s)	96, 165
BlsI	GCNGC	2 cut(s)	97, 166
BmsI	GCATC	1 cut(s)	49
Bpu10I	CCTNAGC	1 cut(s)	267
BseGI	GGATG	1 cut(s)	245
BseMII	CTCAG	1 cut(s)	281
BseXI	GCAGC	2 cut(s)	82, 176
BspCNI	CTCAG	1 cut(s)	280
BssSI	CACGAG	1 cut(s)	203
Bst2BI	CACGAG	1 cut(s)	203
BstDEI	CTNAG	2 cut(s)	261, 267
BstF5I	GGATG	1 cut(s)	245
BstNSI	RCATGY	1 cut(s)	102
BstV1I	GCAGC	2 cut(s)	82, 176
BstXI	CCANNNNNNTGG	1 cut(s)	40
BtsCI	GGATG	1 cut(s)	245
BtsIMutI	CAGTG	1 cut(s)	110
CaiI	CAGNNNCTG	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	11
CviAII	CATG	1 cut(s)	99
CviJI	RGCY	5 cut(s)	68, 83, 95, 138, 266
CviKI_1	RGCY	5 cut(s)	68, 83, 95, 138, 266
CviQI	GTAC	1 cut(s)	11
DdeI	CTNAG	2 cut(s)	261, 267
DraI	TTTAAA	1 cut(s)	159
FaeI	CATG	1 cut(s)	102
FaiI	YATR	3 cut(s)	100, 123, 234
FatI	CATG	1 cut(s)	98
Fnu4HI	GCNGC	2 cut(s)	96, 165
FokI	GGATG	1 cut(s)	252
Fsp4HI	GCNGC	2 cut(s)	96, 165
GluI	GCNGC	2 cut(s)	96, 165
Hin1II	CATG	1 cut(s)	102
HinfI	GANTC	1 cut(s)	44
HphI	GGTGA	1 cut(s)	141
Hpy166II	GTNNAC	1 cut(s)	149
Hpy188I	TCNGA	1 cut(s)	91
Hpy188III	TCNNGA	2 cut(s)	33, 203
Hpy8I	GTNNAC	1 cut(s)	149
HpyCH4V	TGCA	1 cut(s)	98
HpyF3I	CTNAG	2 cut(s)	261, 267
Hsp92II	CATG	1 cut(s)	102
LpnPI	CCDG	5 cut(s)	46, 54, 165, 209, 254
Lsp1109I	GCAGC	2 cut(s)	82, 176
LweI	GCATC	1 cut(s)	49
MaeIII	GTNAC	1 cut(s)	111
MboII	GAAGA	1 cut(s)	259
MluCI	AATT	3 cut(s)	116, 228, 277
MlyI	GAGTC	1 cut(s)	38
MnlI	CCTC	2 cut(s)	29, 136
MseI	TTAA	1 cut(s)	158
MslI	CAYNNNNRTG	1 cut(s)	103
NlaIII	CATG	1 cut(s)	102
NmuCI	GTSAC	1 cut(s)	111
NspI	RCATGY	1 cut(s)	102
PkrI	GCNGC	2 cut(s)	97, 166
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
PsiI	TTATAA	1 cut(s)	234
PstNI	CAGNNNCTG	1 cut(s)	95
RsaI	GTAC	1 cut(s)	12
RsaNI	GTAC	1 cut(s)	11
RseI	CAYNNNNRTG	1 cut(s)	103
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	2 cut(s)	96, 165
SchI	GAGTC	1 cut(s)	38
SetI	ASST	3 cut(s)	97, 128, 228
SfaNI	GCATC	1 cut(s)	49
SmiMI	CAYNNNNRTG	1 cut(s)	103
Sse9I	AATT	3 cut(s)	116, 228, 277
TasI	AATT	3 cut(s)	116, 228, 277
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TscAI	CASTG	1 cut(s)	110
TseFI	GTSAC	1 cut(s)	111
TseI	GCWGC	2 cut(s)	95, 164
Tsp45I	GTSAC	1 cut(s)	111
TspRI	CASTG	1 cut(s)	110
XceI	RCATGY	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.