RLG00000018084

Glutamine amidotransferase domain

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
25155399 .. 25158509
3111 bp
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UTR
Exon/CDS
Intron
RLM00000018084

Sequence Viewer

Length: 576 bp
ATGGAAGCATCTCAACCCGTTTATCAAAAACGCGAAGAGCCTGATAAGACCCGACTTCAACCAGGACTTTACGAGGAACATGGGGAAGAATTTGCTGACATGCTGGACGGGATGTTCTCCTTTGTCCTCCTTGATACAAGAGACAACACTTTCATGGCGGCTCGAGATGCCATTGGCATTACCCCACAAAAAAGGTGGTACAATCCAGAATGGTTTTTGGAGAAGATACCATCATCTCCTTATGATCCCATTGTTTTACGCGAGGCTTTTGAGAAGGCCGTGTTAAAGAGACTTATGACAGATGTACCATTCGGTGTTCTTTTGTCCGGTGGATTGGACTCGTCACTCGTTGCTGCTGTGGCTTGTCGCTATTTGGCTAAATCAGATGCTGCACGTCAGTGGGGGTCACAATTACATACCTTTTGCATTGGCTTAGAGGGTTCTCCAGATTTAAAAGCAGCAAGAGAAGTTGCTGATTATCTTGGAACTCATCATCACGAGTTTCACTTTACTGTTCACGTAATTTATAAGGGATGTAAGAAGAATACTTTCACTAATGCTCAAGGTGGAAATTAG

Protein Analysis

192

Amino Acids

21.56

Weight (kDa)

5.79

Isoelectric Point (pI)

39.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATase_7 PF13537 8 - 62 2.2e-09 Glutamine amidotransferase domain
Asn_synthase PF00733 86 - 172 1e-26 Asparagine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis pycom01g05790
rosa_chinensis RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 528
AccII CGCG 2 cut(s) 33, 261
AciI CCGC 1 cut(s) 158
AclWI GGATC 1 cut(s) 239
AcsI RAATTY 1 cut(s) 89
AfaI GTAC 2 cut(s) 200, 306
AgsI TTSAA 1 cut(s) 59
AjiI CACGTC 1 cut(s) 395
AjnI CCWGG 1 cut(s) 61
AleI CACNNNNGTG 1 cut(s) 397
AloI GAACNNNNNNTCC 2 cut(s) 98, 130
Alw26I GTCTC 2 cut(s) 135, 283
AlwI GGATC 1 cut(s) 239
AlwNI CAGNNNCTG 1 cut(s) 389
Ama87I CYCGRG 1 cut(s) 162
AoxI GGCC 1 cut(s) 276
ApeKI GCWGC 3 cut(s) 353, 389, 458
ApoI RAATTY 1 cut(s) 89
Asp700I GAANNNNTTC 1 cut(s) 548
AvaI CYCGRG 1 cut(s) 162
BaeI ACNNNNGTAYC 2 cut(s) 288, 321
BauI CACGAG 1 cut(s) 497
BbvI GCAGC 3 cut(s) 340, 376, 470
BccI CCATC 1 cut(s) 238
BceAI ACGGC 1 cut(s) 263
BciT130I CCWGG 1 cut(s) 63
BcoDI GTCTC 2 cut(s) 135, 283
BisI GCNGC 4 cut(s) 159, 354, 390, 459
BlsI GCNGC 4 cut(s) 160, 355, 391, 460
Bme1390I CCNGG 1 cut(s) 63
BmeT110I CYCGRG 1 cut(s) 162
BmgBI CACGTC 1 cut(s) 395
BmrFI CCNGG 1 cut(s) 63
BmsI GCATC 3 cut(s) 17, 157, 376
BpmI CTGGAG 1 cut(s) 429
BpuEI CTTGAG 1 cut(s) 546
BsaAI YACGTR 1 cut(s) 520
BsaWI WCCGGW 1 cut(s) 326
BseBI CCWGG 1 cut(s) 63
BseGI GGATG 2 cut(s) 117, 539
BseXI GCAGC 3 cut(s) 340, 376, 470
BsgI GTGCAG 1 cut(s) 375
Bsh1236I CGCG 2 cut(s) 33, 261
BshFI GGCC 1 cut(s) 278
BsiHKCI CYCGRG 1 cut(s) 162
BsiSI CCGG 1 cut(s) 327
BsmAI GTCTC 2 cut(s) 135, 283
BsnI GGCC 1 cut(s) 278
BsoBI CYCGRG 1 cut(s) 162
Bsp143I GATC 1 cut(s) 244
BspACI CCGC 1 cut(s) 158
BspANI GGCC 1 cut(s) 278
BspFNI CGCG 2 cut(s) 33, 261
BspPI GGATC 1 cut(s) 239
BspQI GCTCTTC 1 cut(s) 30
BssMI GATC 1 cut(s) 244
BssSI CACGAG 1 cut(s) 497
Bst2BI CACGAG 1 cut(s) 497
Bst2UI CCWGG 1 cut(s) 63
Bst4CI ACNGT 1 cut(s) 514
Bst6I CTCTTC 1 cut(s) 30
BstBAI YACGTR 1 cut(s) 520
BstDEI CTNAG 1 cut(s) 433
BstF5I GGATG 2 cut(s) 117, 539
BstFNI CGCG 2 cut(s) 33, 261
BstKTI GATC 1 cut(s) 247
BstMAI GTCTC 2 cut(s) 135, 283
BstMBI GATC 1 cut(s) 244
BstMWI GCNNNNNNNGC 2 cut(s) 167, 359
BstNI CCWGG 1 cut(s) 63
BstNSI RCATGY 1 cut(s) 103
BstSCI CCNGG 1 cut(s) 61
BstUI CGCG 2 cut(s) 33, 261
BstV1I GCAGC 3 cut(s) 340, 376, 470
BsuRI GGCC 1 cut(s) 278
BtrI CACGTC 1 cut(s) 395
BtsCI GGATG 2 cut(s) 117, 539
BtsIMutI CAGTG 1 cut(s) 404
CaiI CAGNNNCTG 1 cut(s) 389
Csp6I GTAC 2 cut(s) 199, 305
CspCI CAANNNNNGTGG 2 cut(s) 176, 211
CviAII CATG 3 cut(s) 80, 100, 154
CviJI RGCY 7 cut(s) 40, 161, 266, 278, 362, 377, 432
CviKI_1 RGCY 7 cut(s) 40, 161, 266, 278, 362, 377, 432
CviQI GTAC 2 cut(s) 199, 305
DdeI CTNAG 1 cut(s) 433
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
DraI TTTAAA 1 cut(s) 453
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco88I CYCGRG 1 cut(s) 162
EcoRII CCWGG 1 cut(s) 61
FaeI CATG 3 cut(s) 83, 103, 157
FaiI YATR 7 cut(s) 81, 101, 155, 243, 296, 417, 528
FatI CATG 3 cut(s) 79, 99, 153
Fnu4HI GCNGC 4 cut(s) 159, 354, 390, 459
FokI GGATG 2 cut(s) 124, 546
Fsp4HI GCNGC 4 cut(s) 159, 354, 390, 459
GluI GCNGC 4 cut(s) 159, 354, 390, 459
GsuI CTGGAG 1 cut(s) 429
HaeIII GGCC 1 cut(s) 278
HapII CCGG 1 cut(s) 327
Hin1II CATG 3 cut(s) 83, 103, 157
HinfI GANTC 1 cut(s) 338
HpaII CCGG 1 cut(s) 327
Hpy166II GTNNAC 1 cut(s) 517
Hpy188I TCNGA 1 cut(s) 385
Hpy188III TCNNGA 4 cut(s) 164, 206, 446, 497
Hpy8I GTNNAC 1 cut(s) 517
HpyAV CCTTC 1 cut(s) 268
HpyCH4III ACNGT 1 cut(s) 514
HpyCH4IV ACGT 2 cut(s) 394, 519
HpyCH4V TGCA 2 cut(s) 392, 426
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 359
HpyF3I CTNAG 1 cut(s) 433
HpySE526I ACGT 2 cut(s) 394, 519
Hsp92II CATG 3 cut(s) 83, 103, 157
Kzo9I GATC 1 cut(s) 244
LguI GCTCTTC 1 cut(s) 30
LpnPI CCDG 7 cut(s) 48, 54, 75, 89, 219, 340, 459
Lsp1109I GCAGC 3 cut(s) 340, 376, 470
LweI GCATC 3 cut(s) 17, 157, 376
MaeII ACGT 2 cut(s) 394, 519
MaeIII GTNAC 2 cut(s) 342, 405
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MboII GAAGA 4 cut(s) 47, 98, 235, 553
MluCI AATT 4 cut(s) 89, 410, 522, 571
MlyI GAGTC 1 cut(s) 332
MnlI CCTC 4 cut(s) 67, 137, 256, 430
MroXI GAANNNNTTC 1 cut(s) 548
MseI TTAA 2 cut(s) 284, 452
MslI CAYNNNNRTG 2 cut(s) 152, 397
MspI CCGG 1 cut(s) 327
MspR9I CCNGG 1 cut(s) 63
MvaI CCWGG 1 cut(s) 63
MvnI CGCG 2 cut(s) 33, 261
MwoI GCNNNNNNNGC 2 cut(s) 167, 359
NdeII GATC 1 cut(s) 244
NlaIII CATG 3 cut(s) 83, 103, 157
NmuCI GTSAC 2 cut(s) 342, 405
NspI RCATGY 1 cut(s) 103
OliI CACNNNNGTG 1 cut(s) 397
PaeR7I CTCGAG 1 cut(s) 162
PciSI GCTCTTC 1 cut(s) 30
PdmI GAANNNNTTC 1 cut(s) 548
PkrI GCNGC 4 cut(s) 160, 355, 391, 460
PleI GAGTC 1 cut(s) 332
PpsI GAGTC 1 cut(s) 332
Ppu21I YACGTR 1 cut(s) 520
PsiI TTATAA 1 cut(s) 528
Psp6I CCWGG 1 cut(s) 61
PspGI CCWGG 1 cut(s) 61
PstNI CAGNNNCTG 1 cut(s) 389
RsaI GTAC 2 cut(s) 200, 306
RsaNI GTAC 2 cut(s) 199, 305
RseI CAYNNNNRTG 2 cut(s) 152, 397
SapI GCTCTTC 1 cut(s) 30
SaqAI TTAA 2 cut(s) 284, 452
SatI GCNGC 4 cut(s) 159, 354, 390, 459
Sau3AI GATC 1 cut(s) 244
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 1 cut(s) 63
SetI ASST 5 cut(s) 197, 397, 422, 522, 568
SfaNI GCATC 3 cut(s) 17, 157, 376
Sfr274I CTCGAG 1 cut(s) 162
SlaI CTCGAG 1 cut(s) 162
SmiMI CAYNNNNRTG 2 cut(s) 152, 397
SmlI CTYRAG 2 cut(s) 162, 561
SmoI CTYRAG 2 cut(s) 162, 561
Sse9I AATT 4 cut(s) 89, 410, 522, 571
SsiI CCGC 1 cut(s) 158
StyD4I CCNGG 1 cut(s) 61
TaaI ACNGT 1 cut(s) 514
TaiI ACGT 2 cut(s) 397, 522
TaqI TCGA 1 cut(s) 163
TasI AATT 4 cut(s) 89, 410, 522, 571
TauI GCSGC 1 cut(s) 161
Tru1I TTAA 2 cut(s) 284, 452
Tru9I TTAA 2 cut(s) 284, 452
TscAI CASTG 1 cut(s) 404
TseFI GTSAC 2 cut(s) 342, 405
TseI GCWGC 3 cut(s) 353, 389, 458
Tsp45I GTSAC 2 cut(s) 342, 405
TspDTI ATGAA 1 cut(s) 142
TspRI CASTG 1 cut(s) 404
XapI RAATTY 1 cut(s) 89
XceI RCATGY 1 cut(s) 103
XcmI CCANNNNNNNNNTGG 1 cut(s) 192
XhoI CTCGAG 1 cut(s) 162
XmnI GAANNNNTTC 1 cut(s) 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.