Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Forward (+)

25994712 .. 25996015

Gene Structure 1304 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48722

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGCAGCACAGCATCGAGAAAATCAGGCCTGATCGTGGGAGAATTGAGAAGTGGGTCTTGCACAAAGCATTTGATGATGATCAGAAGCCATATTTACCAAACCATATCATGTATAGGCAGAAGGAGCAGTTTAGTGATGGTGTCGGTTACAGCTGGATTGACTGCTTGAAAGATCATGCCAACAAACAAAGATGCAGCACAGCAAAAGCTGTGGAGTGGGATGCGGAATGGTCCAAGAACTCTGTTCCATCTGGTCGTGCTGCACTTGGTATACATGCAGCTGCTTATGAGGAATCCAAAGATGTAAAGACTAGAAGTCTTGTGAGAGACTCTCCACAGAAACTTATAAAAGGGGTTGCTGAGAAAGTGGCTGCAGTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

127

Amino Acids

14.49

Weight (kDa)

9.08

Isoelectric Point (pI)

39.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asn_synthase	PF00733	12 - 67	3.4e-07	Asparagine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	347
AccI	GTMKAC	1 cut(s)	271
AciI	CCGC	1 cut(s)	224
AfiI	CCNNNNNNNGG	1 cut(s)	35
AgsI	TTSAA	1 cut(s)	169
AhdI	GACNNNNNGTC	1 cut(s)	315
AluBI	AGCT	3 cut(s)	153, 209, 281
AluI	AGCT	3 cut(s)	153, 209, 281
Alw26I	GTCTC	1 cut(s)	321
AoxI	GGCC	1 cut(s)	26
ApeKI	GCWGC	6 cut(s)	4, 195, 260, 278, 281, 371
AspS9I	GGNCC	1 cut(s)	231
AvaII	GGWCC	1 cut(s)	231
BbvI	GCAGC	6 cut(s)	16, 207, 247, 268, 290, 358
BccI	CCATC	2 cut(s)	131, 256
BclI	TGATCA	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	321
BfaI	CTAG	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	372
BisI	GCNGC	6 cut(s)	5, 196, 261, 279, 282, 372
BlsI	GCNGC	6 cut(s)	6, 197, 262, 280, 283, 373
Bme18I	GGWCC	1 cut(s)	231
BmeRI	GACNNNNNGTC	1 cut(s)	315
BmgT120I	GGNCC	1 cut(s)	231
BmsI	GCATC	3 cut(s)	21, 182, 211
BplI	GAGNNNNNCTC	2 cut(s)	316, 348
BsaBI	GATNNNNATC	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse8I	GATNNNNATC	1 cut(s)	78
BseGI	GGATG	1 cut(s)	226
BseJI	GATNNNNATC	1 cut(s)	78
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseMII	CTCAG	1 cut(s)	351
BseXI	GCAGC	6 cut(s)	16, 207, 247, 268, 290, 358
BsgI	GTGCAG	1 cut(s)	246
BshFI	GGCC	1 cut(s)	28
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmAI	GTCTC	1 cut(s)	321
BsnI	GGCC	1 cut(s)	28
Bsp143I	GATC	3 cut(s)	31, 79, 172
BspACI	CCGC	1 cut(s)	224
BspANI	GGCC	1 cut(s)	28
BspCNI	CTCAG	1 cut(s)	352
BspMAI	CTGCAG	1 cut(s)	376
BssMI	GATC	3 cut(s)	31, 79, 172
BssNAI	GTATAC	1 cut(s)	272
Bst1107I	GTATAC	1 cut(s)	272
BstDEI	CTNAG	1 cut(s)	360
BstF5I	GGATG	1 cut(s)	226
BstKTI	GATC	3 cut(s)	34, 82, 175
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	3 cut(s)	31, 79, 172
BstMWI	GCNNNNNNNGC	1 cut(s)	124
BstNSI	RCATGY	1 cut(s)	278
BstSFI	CTRYAG	1 cut(s)	372
BstV1I	GCAGC	6 cut(s)	16, 207, 247, 268, 290, 358
BstZ17I	GTATAC	1 cut(s)	272
BsuRI	GGCC	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	226
Cfr13I	GGNCC	1 cut(s)	231
CspCI	CAANNNNNGTGG	2 cut(s)	192, 227
CviAII	CATG	3 cut(s)	109, 176, 275
CviJI	RGCY	6 cut(s)	28, 88, 153, 209, 281, 371
CviKI_1	RGCY	6 cut(s)	28, 88, 153, 209, 281, 371
DdeI	CTNAG	1 cut(s)	360
DpnI	GATC	3 cut(s)	33, 81, 174
DpnII	GATC	3 cut(s)	31, 79, 172
DriI	GACNNNNNGTC	1 cut(s)	315
Eam1105I	GACNNNNNGTC	1 cut(s)	315
Eco147I	AGGCCT	1 cut(s)	28
Eco47I	GGWCC	1 cut(s)	231
FaeI	CATG	3 cut(s)	112, 179, 278
FaiI	YATR	9 cut(s)	91, 105, 110, 114, 177, 272, 276, 288, 347
FalI	AAGNNNNNCTT	2 cut(s)	41, 73
FatI	CATG	3 cut(s)	108, 175, 274
FbaI	TGATCA	1 cut(s)	79
FblI	GTMKAC	1 cut(s)	271
Fnu4HI	GCNGC	6 cut(s)	5, 196, 261, 279, 282, 372
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	6 cut(s)	5, 196, 261, 279, 282, 372
FspBI	CTAG	1 cut(s)	312
GluI	GCNGC	6 cut(s)	5, 196, 261, 279, 282, 372
HaeIII	GGCC	1 cut(s)	28
Hin1II	CATG	3 cut(s)	112, 179, 278
HinfI	GANTC	2 cut(s)	293, 329
Hpy166II	GTNNAC	1 cut(s)	272
Hpy188I	TCNGA	1 cut(s)	84
Hpy188III	TCNNGA	1 cut(s)	16
Hpy8I	GTNNAC	1 cut(s)	272
HpyAV	CCTTC	1 cut(s)	115
HpyCH4V	TGCA	6 cut(s)	4, 61, 195, 263, 278, 374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	124
HpyF3I	CTNAG	1 cut(s)	360
Hsp92II	CATG	3 cut(s)	112, 179, 278
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	3 cut(s)	31, 79, 172
LmnI	GCTCC	1 cut(s)	124
LpnPI	CCDG	4 cut(s)	10, 42, 139, 237
Lsp1109I	GCAGC	6 cut(s)	16, 207, 247, 268, 290, 358
LweI	GCATC	3 cut(s)	21, 182, 211
MaeI	CTAG	1 cut(s)	312
MaeIII	GTNAC	1 cut(s)	146
MalI	GATC	3 cut(s)	33, 81, 174
MboI	GATC	3 cut(s)	31, 79, 172
MluCI	AATT	1 cut(s)	42
MlyI	GAGTC	1 cut(s)	323
MnlI	CCTC	1 cut(s)	283
MspA1I	CMGCKG	2 cut(s)	153, 281
MwoI	GCNNNNNNNGC	1 cut(s)	124
NdeII	GATC	3 cut(s)	31, 79, 172
NlaIII	CATG	3 cut(s)	112, 179, 278
NspI	RCATGY	1 cut(s)	278
PceI	AGGCCT	1 cut(s)	28
PfeI	GAWTC	1 cut(s)	293
PkrI	GCNGC	6 cut(s)	6, 197, 262, 280, 283, 373
PleI	GAGTC	1 cut(s)	323
PpsI	GAGTC	1 cut(s)	323
PsiI	TTATAA	1 cut(s)	347
PspPI	GGNCC	1 cut(s)	231
PstI	CTGCAG	1 cut(s)	376
PvuII	CAGCTG	2 cut(s)	153, 281
SatI	GCNGC	6 cut(s)	5, 196, 261, 279, 282, 372
Sau3AI	GATC	3 cut(s)	31, 79, 172
Sau96I	GGNCC	1 cut(s)	231
SchI	GAGTC	1 cut(s)	323
SetI	ASST	3 cut(s)	155, 211, 283
SfaNI	GCATC	3 cut(s)	21, 182, 211
SfcI	CTRYAG	1 cut(s)	372
SinI	GGWCC	1 cut(s)	231
Sse9I	AATT	1 cut(s)	42
SseBI	AGGCCT	1 cut(s)	28
SsiI	CCGC	1 cut(s)	224
SspMI	CTAG	1 cut(s)	312
StuI	AGGCCT	1 cut(s)	28
TaqI	TCGA	1 cut(s)	15
TasI	AATT	1 cut(s)	42
TfiI	GAWTC	1 cut(s)	293
TseI	GCWGC	6 cut(s)	4, 195, 260, 278, 281, 371
VpaK11BI	GGWCC	1 cut(s)	231
XceI	RCATGY	1 cut(s)	278
XmiI	GTMKAC	1 cut(s)	271
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.